def register_default_cosym_observers(script):
"""Register the standard observers to the cosym script."""
script.cosym_analysis.register_observer(
event="analysed_symmetry", observer=SymmetryAnalysisObserver())
script.cosym_analysis.register_observer(
event="analysed_clusters", observer=CosymClusterAnalysisObserver())
script.register_observer(event="run_cosym",
observer=UnitCellAnalysisObserver())
script.register_observer(event="run_cosym",
observer=CosymHTMLGenerator(),
callback="make_html")
script.register_observer(event="run_cosym",
observer=CosymJSONGenerator(),
callback="make_json")
def make_html(self, cosym_script):
"""Collect data from the individual observers and write the html."""
filename = cosym_script.params.output.html
if not filename:
return
self.data.update(CosymClusterAnalysisObserver().make_plots())
self.data.update(UnitCellAnalysisObserver().make_plots())
self.data.update(SymmetryAnalysisObserver().make_tables())
print(f"Writing html report to: {filename}")
loader = ChoiceLoader([
PackageLoader("dials", "templates"),
PackageLoader("dials", "static", encoding="utf-8"),
])
env = Environment(loader=loader)
template = env.get_template("cosym_report.html")
html = template.render(
page_title="DIALS cosym report",
cosym_graphs=self.data["cosym_graphs"],
unit_cell_graphs=self.data["unit_cell_graphs"],
symmetry_analysis=self.data["symmetry_analysis"],
)
with open(filename, "wb") as f:
f.write(html.encode("utf-8", "xmlcharrefreplace"))