def available_fields(self):
for path in self.pathname:
for root, dirs, files in os.walk(path):
for filename in files:
dcm = utils.isdicom(os.path.join(root, filename))
if dcm:
return dcm.dir('')
msg = ''.join([';'.join(self.pathname), ' contains no DICOMs'])
raise errors.DicomFolderError(msg)
def sort_image(self, filename):
dcm = utils.isdicom(filename)
if not dcm:
return
dcm = Dicom(filename, dcm)
dcm.set_anonymization_rules(self.anonymization_lookup)
dcm.series_first = self.series_first
# Use the original filename for 3d recons
if self.keep_filename:
output_filename = os.path.basename(filename)
else:
output_filename = self.filename_format
dcm.sort(self.output_directory,
self.directory_format,
output_filename,
test=self.test,
rootdir=self.root,
keep_original=self.keep_original)
def test_valid_dicom(self, dicom_generator):
filename, _ = dicom_generator()
assert utils.isdicom(filename) is not False
def test_invalid_dicom(self, tmpdir):
fid = tmpdir.join('invalid')
fid.write('invalid')
assert utils.isdicom(str(fid)) is False
def test_dicomdir(self, dicom_generator):
dicomdir, _ = dicom_generator('DICOMDIR')
assert utils.isdicom(dicomdir) is False