def _cleanup_label(label):
"""
Reformat the ALL CAPS OMIM labels to something more pleasant to read.
This will:
1. remove the abbreviation suffixes
2. convert the roman numerals to integer numbers
3. make the text title case,
except for suplied conjunctions/prepositions/articles
:param label:
:return:
"""
conjunctions = ['and', 'but', 'yet', 'for', 'nor', 'so']
little_preps = [
'at', 'by', 'in', 'of', 'on', 'to', 'up', 'as', 'it', 'or'
]
articles = ['a', 'an', 'the']
# remove the abbreviation
lbl = label.split(r';')[0]
fixedwords = []
i = 0
for wrd in lbl.split():
i += 1
# convert the roman numerals to numbers,
# but assume that the first word is not
# a roman numeral (this permits things like "X inactivation"
if i > 1 and re.match(romanNumeralPattern, wrd):
num = fromRoman(wrd)
# make the assumption that the number of syndromes are <100
# this allows me to retain "SYNDROME C"
# and not convert it to "SYNDROME 100"
if 0 < num < 100:
# get the non-roman suffix, if present.
# for example, IIIB or IVA
suffix = wrd.replace(toRoman(num), '', 1)
fixed = ''.join((str(num), suffix))
wrd = fixed
# capitalize first letter
wrd = wrd.title()
# replace interior conjunctions, prepositions,
# and articles with lowercase
if wrd.lower() in (conjunctions + little_preps +
articles) and i != 1:
wrd = wrd.lower()
fixedwords.append(wrd)
lbl = ' '.join(fixedwords)
# print (label, '-->', lbl)
return lbl
def _cleanup_label(label):
"""
Reformat the ALL CAPS OMIM labels to something more pleasant to read.
This will:
1. remove the abbreviation suffixes
2. convert the roman numerals to integer numbers
3. make the text title case,
except for suplied conjunctions/prepositions/articles
:param label:
:return:
"""
conjunctions = ['and', 'but', 'yet', 'for', 'nor', 'so']
little_preps = [
'at', 'by', 'in', 'of', 'on', 'to', 'up', 'as', 'it', 'or']
articles = ['a', 'an', 'the']
# remove the abbreviation
l = re.split(r';', label)[0]
fixedwords = []
i = 0
for w in l.split():
i += 1
# convert the roman numerals to numbers,
# but assume that the first word is not
# a roman numeral (this permits things like "X inactivation"
if i > 1 and re.match(romanNumeralPattern, w):
n = fromRoman(w)
# make the assumption that the number of syndromes are <100
# this allows me to retain "SYNDROME C"
# and not convert it to "SYNDROME 100"
if 0 < n < 100:
# get the non-roman suffix, if present.
# for example, IIIB or IVA
suffix = w.replace(toRoman(n), '', 1)
fixed = ''.join((str(n), suffix))
w = fixed
# capitalize first letter
w = w.title()
# replace interior conjunctions, prepositions,
# and articles with lowercase
if w.lower() in (conjunctions+little_preps+articles) and i != 1:
w = w.lower()
fixedwords.append(w)
l = ' '.join(fixedwords)
# print (label,'-->',l)
return l