def test_plot_dist_matrix_88_bins(self):
"""Plot a distance matrix with 88 samples"""
names = [
"sample0_gt1000_bin{}".format(i) for i in range(88)
]
matrix = np.genfromtxt(ospj(DATA_PATH, "expected_dist_matrix_88_bins.tsv"),
delimiter="\t")
heatmap = ospj(TMP_BASENAME_DIR, "hclust_heatmap.pdf")
dendrogram = ospj(TMP_BASENAME_DIR, "hclust_dendrogram.pdf")
dnadiff_dist_matrix.plot_dist_matrix(matrix, names, heatmap, dendrogram)
ok_(os.path.exists(heatmap))
ok_(os.path.exists(dendrogram))
def test_plot_dist_matrix_88_bins(self):
"""Plot a distance matrix with 88 samples"""
names = ["sample0_gt1000_bin{}".format(i) for i in range(88)]
matrix = np.genfromtxt(ospj(DATA_PATH,
"expected_dist_matrix_88_bins.tsv"),
delimiter="\t")
heatmap = ospj(TMP_BASENAME_DIR, "hclust_heatmap.pdf")
dendrogram = ospj(TMP_BASENAME_DIR, "hclust_dendrogram.pdf")
dnadiff_dist_matrix.plot_dist_matrix(matrix, names, heatmap,
dendrogram)
ok_(os.path.exists(heatmap))
ok_(os.path.exists(dendrogram))
def test_plot_dist_matrix(self):
"""Plot a distance matrix"""
names = [
"sample0_gt1000_bin0",
"sample0_gt1000_bin10",
"sample0_gt1000_bin11",
"sample0_gt1000_bin1",
"sample0_gt1000_bin2",
"sample1_gt1000_bin51",
"sample1_gt1000_bin67",
"sample1_gt1000_bin6",
]
matrix = np.genfromtxt(ospj(DATA_PATH, "expected_dist_matrix.tsv"),
delimiter="\t")
heatmap = ospj(TMP_BASENAME_DIR, "hclust_heatmap.pdf")
dendrogram = ospj(TMP_BASENAME_DIR, "hclust_dendrogram.pdf")
dnadiff_dist_matrix.plot_dist_matrix(matrix, names, heatmap, dendrogram)
ok_(os.path.exists(heatmap))
ok_(os.path.exists(dendrogram))
def test_plot_dist_matrix(self):
"""Plot a distance matrix"""
names = [
"sample0_gt1000_bin0",
"sample0_gt1000_bin10",
"sample0_gt1000_bin11",
"sample0_gt1000_bin1",
"sample0_gt1000_bin2",
"sample1_gt1000_bin51",
"sample1_gt1000_bin67",
"sample1_gt1000_bin6",
]
matrix = np.genfromtxt(ospj(DATA_PATH, "expected_dist_matrix.tsv"),
delimiter="\t")
heatmap = ospj(TMP_BASENAME_DIR, "hclust_heatmap.pdf")
dendrogram = ospj(TMP_BASENAME_DIR, "hclust_dendrogram.pdf")
dnadiff_dist_matrix.plot_dist_matrix(matrix, names, heatmap,
dendrogram)
ok_(os.path.exists(heatmap))
ok_(os.path.exists(dendrogram))
