class DatabaseEditorFrame(wx.Frame):
"""
Various viewing and editing tools for the SQL database. This object is called on Database toolbar click.
"""
def __init__(self, roi_map):
"""
:param roi_map: roi_map object
:type roi_map: DatabaseROIs
"""
wx.Frame.__init__(self, None, title='Database Administrator')
set_msw_background_color(self) # If windows, change the background color
self.roi_map = roi_map
self.db_tree = self.get_db_tree()
self.SetSize(get_window_size(0.792, 0.781))
self.window_db_editor = wx.SplitterWindow(self, wx.ID_ANY, style=wx.SP_3D)
self.window_pane_db_tree = wx.ScrolledWindow(self.window_db_editor, wx.ID_ANY,
style=wx.BORDER_SUNKEN | wx.TAB_TRAVERSAL)
self.tree_ctrl_db = wx.TreeCtrl(self.window_pane_db_tree, wx.ID_ANY, style=wx.TR_HAS_BUTTONS | wx.TR_MULTIPLE)
self.window_pane_query = wx.Panel(self.window_db_editor, wx.ID_ANY, style=wx.BORDER_SUNKEN | wx.TAB_TRAVERSAL)
self.text_ctrl_condition = wx.TextCtrl(self.window_pane_query, wx.ID_ANY, "")
self.list_ctrl_query_results = wx.ListCtrl(self.window_pane_query, wx.ID_ANY,
style=wx.LC_HRULES | wx.LC_REPORT | wx.LC_VRULES)
self.data_query_results = DataTable(self.list_ctrl_query_results, columns=['mrn', 'study_instance_uid'])
self.combo_box_query_table = wx.ComboBox(self.window_pane_query, wx.ID_ANY, choices=list(self.db_tree),
style=wx.CB_DROPDOWN | wx.CB_READONLY)
self.button = {'delete_all_data': wx.Button(self, wx.ID_ANY, "Delete All Data"),
'rebuild_db': wx.Button(self, wx.ID_ANY, "Rebuild Database"),
# 'calculations': wx.Button(self, wx.ID_ANY, "Calculations"),
'edit_db': wx.Button(self, wx.ID_ANY, "Edit Database"),
'reimport': wx.Button(self, wx.ID_ANY, "Reimport from DICOM"),
'delete_study': wx.Button(self, wx.ID_ANY, "Delete Study"),
'change_mrn_uid': wx.Button(self, wx.ID_ANY, "Change MRN/UID"),
'query': wx.Button(self.window_pane_query, wx.ID_ANY, "Query"),
'clear': wx.Button(self.window_pane_query, wx.ID_ANY, "Clear"),
'export_csv': wx.Button(self.window_pane_query, wx.ID_ANY, "Export"),
'remap_roi_names': wx.Button(self, wx.ID_ANY, "Remap ROI Names")}
self.__set_properties()
self.__do_layout()
self.__do_bind()
self.selected_columns = {table: {c: False for c in list(self.db_tree[table])} for table in list(self.db_tree)}
self.selected_tables = {table: False for table in list(self.db_tree)}
self.window_db_editor.SetSashPosition(250)
self.tree_ctrl_db.Expand(self.db_tree_root)
self.allow_tree_select_change = True
self.Show()
def __set_properties(self):
self.SetTitle("Database Administrator")
self.window_pane_db_tree.SetScrollRate(10, 10)
self.window_db_editor.SetMinimumPaneSize(20)
self.db_tree_root = self.tree_ctrl_db.AddRoot('DVH Analytics')
self.table_nodes = {table: self.tree_ctrl_db.AppendItem(self.db_tree_root, table) for table in self.db_tree}
self.column_nodes = {table: {} for table in self.db_tree}
for table in self.db_tree:
for column in self.db_tree[table]:
self.column_nodes[table][column] = self.tree_ctrl_db.AppendItem(self.table_nodes[table], column)
self.combo_box_query_table.SetValue('Plans')
def __do_layout(self):
sizer_wrapper = wx.BoxSizer(wx.VERTICAL)
sizer_query = wx.BoxSizer(wx.VERTICAL)
sizer_query_table = wx.StaticBoxSizer(wx.StaticBox(self.window_pane_query, wx.ID_ANY, "Query Results"),
wx.VERTICAL)
sizer_condition_buttons = wx.BoxSizer(wx.HORIZONTAL)
sizer_download_button = wx.BoxSizer(wx.VERTICAL)
sizer_clear_button = wx.BoxSizer(wx.VERTICAL)
sizer_query_button = wx.BoxSizer(wx.VERTICAL)
sizer_condition = wx.BoxSizer(wx.VERTICAL)
sizer_combo_box = wx.BoxSizer(wx.VERTICAL)
sizer_db_tree = wx.BoxSizer(wx.HORIZONTAL)
sizer_dialog_buttons = wx.BoxSizer(wx.HORIZONTAL)
# sizer_dialog_buttons.Add(self.button['calculations'], 0, wx.ALL, 5)
sizer_dialog_buttons.Add(self.button['edit_db'], 0, wx.ALL, 5)
sizer_dialog_buttons.Add(self.button['reimport'], 0, wx.ALL, 5)
sizer_dialog_buttons.Add(self.button['delete_study'], 0, wx.ALL, 5)
sizer_dialog_buttons.Add(self.button['change_mrn_uid'], 0, wx.ALL, 5)
sizer_dialog_buttons.Add(self.button['rebuild_db'], 0, wx.ALL, 5)
sizer_dialog_buttons.Add(self.button['delete_all_data'], 0, wx.ALL, 5)
sizer_dialog_buttons.Add(self.button['remap_roi_names'], 0, wx.ALL, 5)
sizer_wrapper.Add(sizer_dialog_buttons, 0, wx.ALL, 5)
sizer_db_tree.Add(self.tree_ctrl_db, 1, wx.EXPAND, 0)
self.window_pane_db_tree.SetSizer(sizer_db_tree)
label_table = wx.StaticText(self.window_pane_query, wx.ID_ANY, "Table:")
sizer_combo_box.Add(label_table, 0, wx.BOTTOM | wx.TOP, 5)
sizer_combo_box.Add(self.combo_box_query_table, 0, 0, 0)
sizer_condition_buttons.Add(sizer_combo_box, 0, wx.ALL | wx.EXPAND, 5)
label_condition = wx.StaticText(self.window_pane_query, wx.ID_ANY, "Condition:")
sizer_condition.Add(label_condition, 0, wx.BOTTOM | wx.TOP, 5)
sizer_condition.Add(self.text_ctrl_condition, 0, wx.ALL | wx.EXPAND, 0)
sizer_condition_buttons.Add(sizer_condition, 1, wx.ALL | wx.EXPAND, 5)
label_spacer_1 = wx.StaticText(self.window_pane_query, wx.ID_ANY, "")
sizer_query_button.Add(label_spacer_1, 0, wx.BOTTOM, 5)
sizer_query_button.Add(self.button['query'], 0, wx.ALL, 5)
sizer_condition_buttons.Add(sizer_query_button, 0, wx.ALL, 5)
label_spacer_2 = wx.StaticText(self.window_pane_query, wx.ID_ANY, "")
sizer_download_button.Add(label_spacer_2, 0, wx.BOTTOM, 5)
sizer_download_button.Add(self.button['export_csv'], 0, wx.TOP | wx.BOTTOM, 5)
sizer_condition_buttons.Add(sizer_download_button, 0, wx.ALL, 5)
label_spacer_3 = wx.StaticText(self.window_pane_query, wx.ID_ANY, "")
sizer_clear_button.Add(label_spacer_3, 0, wx.BOTTOM, 5)
sizer_clear_button.Add(self.button['clear'], 0, wx.ALL, 5)
sizer_condition_buttons.Add(sizer_clear_button, 0, wx.ALL, 5)
sizer_query.Add(sizer_condition_buttons, 0, wx.BOTTOM | wx.EXPAND | wx.LEFT | wx.RIGHT, 5)
sizer_query_table.Add(self.list_ctrl_query_results, 1, wx.EXPAND, 0)
sizer_query.Add(sizer_query_table, 1, wx.ALL | wx.EXPAND, 5)
self.window_pane_query.SetSizer(sizer_query)
self.window_db_editor.SplitVertically(self.window_pane_db_tree, self.window_pane_query)
sizer_wrapper.Add(self.window_db_editor, 1, wx.EXPAND, 0)
self.SetSizer(sizer_wrapper)
self.Layout()
self.Center()
def __do_bind(self):
# self.Bind(wx.EVT_TREE_SEL_CHANGED, self.OnTreeAdd, self.tree_ctrl_db, id=self.tree_ctrl_db.GetId())
# All buttons are bound to a function based on their key prepended with 'on_'
# For example, query button calls on_query when clicked
for key, button in self.button.items():
self.Bind(wx.EVT_BUTTON, getattr(self, 'on_' + key), id=button.GetId())
self.Bind(wx.EVT_LIST_COL_CLICK, self.sort_query_results, self.list_ctrl_query_results)
def on_tree_add(self, evt):
self.update_selected_tree_items()
# def UnselectOtherTables(self, selected_table):
# self.allow_tree_select_change = False
# for table, node in self.table_nodes.items():
# if table != selected_table:
# self.tree_ctrl_db.UnselectItem(node)
# self.allow_tree_select_change = True
def on_query(self, evt):
self.update_selected_tree_items()
table = self.combo_box_query_table.GetValue()
columns = [c for c, sel in self.selected_columns[table].items()
if sel and c not in {'mrn', 'study_instance_uid'}]
columns.sort()
if not columns:
columns = [c for c in self.db_tree[table] if c not in {'mrn', 'study_instance_uid'}]
columns.insert(0, 'study_instance_uid')
columns.insert(0, 'mrn')
condition = self.text_ctrl_condition.GetValue()
wait = wx.BusyInfo("Querying data\nPlease wait...")
with DVH_SQL() as cnx:
try:
data = cnx.query(table, ','.join(columns), condition, bokeh_cds=True)
self.data_query_results.set_data(data, columns)
except SQLError as e:
SQLErrorDialog(self, e)
self.data_query_results.clear()
del wait
def on_clear(self, evt):
self.data_query_results.clear()
@staticmethod
def get_db_tree():
tree = get_database_tree()
for table in list(tree):
tree[table] = [column for column in tree[table] if 'string' not in column]
return tree
def update_selected_tree_items(self):
for table, table_item in self.table_nodes.items():
self.selected_tables[table] = self.tree_ctrl_db.IsSelected(table_item)
for column, column_item in self.column_nodes[table].items():
self.selected_columns[table][column] = self.tree_ctrl_db.IsSelected(column_item)
def on_change_mrn_uid(self, evt):
self.change_or_delete_dlg(ChangePatientIdentifierDialog)
def on_delete_study(self, evt):
# TODO: Needs an Are you sure? dialog
self.change_or_delete_dlg(DeletePatientDialog)
def change_or_delete_dlg(self, class_type):
selected_data = self.data_query_results.selected_row_data
if selected_data:
class_type(mrn=selected_data[0][0], study_instance_uid=selected_data[0][1])
else:
class_type()
def on_reimport(self, evt):
selected_data = self.data_query_results.selected_row_data
if selected_data:
ReimportDialog(mrn=selected_data[0][0], study_instance_uid=selected_data[0][1])
else:
ReimportDialog()
@staticmethod
def on_edit_db(evt):
EditDatabaseDialog()
@staticmethod
def on_calculations(evt):
CalculationsDialog()
def on_rebuild_db(self, evt):
RebuildDB(self)
def on_delete_all_data(self, evt):
DeleteAllData(self)
def on_export_csv(self, evt):
save_data_to_file(self, "Export Data Table to CSV", self.data_query_results.get_csv())
def on_remap_roi_names(self, evt):
RemapROIFrame(self.roi_map, remap_all=True)
def sort_query_results(self, evt):
self.data_query_results.sort_table(evt)
class DatabaseEditorFrame(wx.Frame):
"""
Various viewing and editing tools for the SQL database. This object is called on Database toolbar click.
"""
def __init__(self, roi_map, options):
"""
:param roi_map: roi_map object
:type roi_map: DatabaseROIs
"""
wx.Frame.__init__(self, None, title='Database Administrator')
set_frame_icon(self)
set_msw_background_color(
self) # If windows, change the background color
self.roi_map = roi_map
self.options = options
self.db_tree = self.get_db_tree()
self.SetSize(get_window_size(0.792, 0.781))
self.window_db_editor = wx.SplitterWindow(self,
wx.ID_ANY,
style=wx.SP_3D)
self.window_pane_db_tree = wx.ScrolledWindow(self.window_db_editor,
wx.ID_ANY,
style=wx.BORDER_SUNKEN
| wx.TAB_TRAVERSAL)
self.tree_ctrl_db = wx.TreeCtrl(self.window_pane_db_tree,
wx.ID_ANY,
style=wx.TR_HAS_BUTTONS
| wx.TR_MULTIPLE)
self.window_pane_query = wx.Panel(self.window_db_editor,
wx.ID_ANY,
style=wx.BORDER_SUNKEN
| wx.TAB_TRAVERSAL)
self.text_ctrl_condition = wx.TextCtrl(self.window_pane_query,
wx.ID_ANY, "")
self.list_ctrl_query_results = wx.ListCtrl(
self.window_pane_query,
wx.ID_ANY,
style=wx.LC_HRULES | wx.LC_REPORT | wx.LC_VRULES)
self.data_query_results = DataTable(
self.list_ctrl_query_results,
columns=['mrn', 'study_instance_uid'])
self.combo_box_query_table = wx.ComboBox(self.window_pane_query,
wx.ID_ANY,
choices=list(self.db_tree),
style=wx.CB_DROPDOWN
| wx.CB_READONLY)
self.button = {
'delete_all_data':
wx.Button(self, wx.ID_ANY, "Delete All Data"),
'rebuild_db':
wx.Button(self, wx.ID_ANY, "Rebuild Database"),
'calculations':
wx.Button(self, wx.ID_ANY, "Calculations"),
'edit_db':
wx.Button(self, wx.ID_ANY, "Edit Database"),
'reimport':
wx.Button(self, wx.ID_ANY, "Reimport from DICOM"),
'delete_study':
wx.Button(self, wx.ID_ANY, "Delete Study"),
'change_mrn_uid':
wx.Button(self, wx.ID_ANY, "Change MRN/UID"),
'query':
wx.Button(self.window_pane_query, wx.ID_ANY, "Query"),
'clear':
wx.Button(self.window_pane_query, wx.ID_ANY, "Clear"),
'export_csv':
wx.Button(self.window_pane_query, wx.ID_ANY, "Export"),
'remap_roi_names':
wx.Button(self, wx.ID_ANY, "Remap ROI Names"),
'update_from_csv':
wx.Button(self, wx.ID_ANY, "Update from CSV"),
# 'plan_complexity': wx.Button(self, wx.ID_ANY, "Recalc Plan Complexities"),
'auto_fit_columns':
wx.Button(self.window_pane_query, wx.ID_ANY, "Auto-fit Columns")
}
self.checkbox_auto_backup = wx.CheckBox(
self, wx.ID_ANY, "Auto Backup SQLite DB After Import")
self.__set_properties()
self.__do_layout()
self.__do_bind()
self.selected_columns = {
table: {c: False
for c in list(self.db_tree[table])}
for table in list(self.db_tree)
}
self.selected_tables = {table: False for table in list(self.db_tree)}
self.window_db_editor.SetSashPosition(250)
self.tree_ctrl_db.Expand(self.db_tree_root)
self.allow_tree_select_change = True
self.Show()
def __set_properties(self):
self.SetTitle("Database Administrator")
self.window_pane_db_tree.SetScrollRate(10, 10)
self.window_db_editor.SetMinimumPaneSize(20)
self.db_tree_root = self.tree_ctrl_db.AddRoot('DVH Analytics')
self.table_nodes = {
table: self.tree_ctrl_db.AppendItem(self.db_tree_root, table)
for table in self.db_tree
}
self.column_nodes = {table: {} for table in self.db_tree}
for table in self.db_tree:
for column in self.db_tree[table]:
self.column_nodes[table][
column] = self.tree_ctrl_db.AppendItem(
self.table_nodes[table], column)
self.combo_box_query_table.SetValue('Plans')
self.checkbox_auto_backup.SetFont(
wx.Font(11, wx.FONTFAMILY_DEFAULT, wx.FONTSTYLE_NORMAL,
wx.FONTWEIGHT_NORMAL, 0, ""))
self.checkbox_auto_backup.SetValue(self.options.AUTO_SQL_DB_BACKUP)
def __do_layout(self):
sizer_wrapper = wx.BoxSizer(wx.VERTICAL)
sizer_query = wx.BoxSizer(wx.VERTICAL)
sizer_query_table = wx.StaticBoxSizer(
wx.StaticBox(self.window_pane_query, wx.ID_ANY, "Query Results"),
wx.VERTICAL)
sizer_condition_buttons = wx.BoxSizer(wx.HORIZONTAL)
sizer_download_button = wx.BoxSizer(wx.VERTICAL)
sizer_clear_button = wx.BoxSizer(wx.VERTICAL)
sizer_query_button = wx.BoxSizer(wx.VERTICAL)
sizer_auto_fit_columns_button = wx.BoxSizer(wx.VERTICAL)
sizer_condition = wx.BoxSizer(wx.VERTICAL)
sizer_combo_box = wx.BoxSizer(wx.VERTICAL)
sizer_db_tree = wx.BoxSizer(wx.HORIZONTAL)
sizer_dialog_buttons = wx.BoxSizer(wx.VERTICAL)
sizer_dialog_buttons_1 = wx.BoxSizer(wx.HORIZONTAL)
sizer_dialog_buttons_1.Add(self.button['calculations'], 0, wx.ALL, 5)
sizer_dialog_buttons_1.Add(self.button['edit_db'], 0, wx.ALL, 5)
sizer_dialog_buttons_1.Add(self.button['reimport'], 0, wx.ALL, 5)
sizer_dialog_buttons_1.Add(self.button['delete_study'], 0, wx.ALL, 5)
sizer_dialog_buttons_1.Add(self.button['change_mrn_uid'], 0, wx.ALL, 5)
sizer_dialog_buttons_1.Add(self.button['rebuild_db'], 0, wx.ALL, 5)
sizer_dialog_buttons_1.Add(self.button['delete_all_data'], 0, wx.ALL,
5)
sizer_dialog_buttons_1.Add(self.button['remap_roi_names'], 0, wx.ALL,
5)
sizer_dialog_buttons_1.Add(self.button['update_from_csv'], 0, wx.ALL,
5)
# sizer_dialog_buttons.Add(self.button['plan_complexity'], 0, wx.ALL, 5)
sizer_dialog_buttons.Add(sizer_dialog_buttons_1, 0, 0, 0)
sizer_dialog_buttons.Add(self.checkbox_auto_backup, 0, wx.LEFT, 5)
sizer_wrapper.Add(sizer_dialog_buttons, 0, wx.ALL, 5)
sizer_db_tree.Add(self.tree_ctrl_db, 1, wx.EXPAND, 0)
self.window_pane_db_tree.SetSizer(sizer_db_tree)
label_table = wx.StaticText(self.window_pane_query, wx.ID_ANY,
"Table:")
sizer_combo_box.Add(label_table, 0, wx.BOTTOM | wx.TOP, 5)
sizer_combo_box.Add(self.combo_box_query_table, 0, 0, 0)
sizer_condition_buttons.Add(sizer_combo_box, 0, wx.ALL | wx.EXPAND, 5)
label_condition = wx.StaticText(self.window_pane_query, wx.ID_ANY,
"Condition:")
sizer_condition.Add(label_condition, 0, wx.BOTTOM | wx.TOP, 5)
sizer_condition.Add(self.text_ctrl_condition, 0, wx.ALL | wx.EXPAND, 0)
sizer_condition_buttons.Add(sizer_condition, 1, wx.ALL | wx.EXPAND, 5)
label_spacer_1 = wx.StaticText(self.window_pane_query, wx.ID_ANY, "")
sizer_query_button.Add(label_spacer_1, 0, wx.BOTTOM, 5)
sizer_query_button.Add(self.button['query'], 0, wx.ALL, 5)
sizer_condition_buttons.Add(sizer_query_button, 0, wx.ALL, 5)
label_spacer_2 = wx.StaticText(self.window_pane_query, wx.ID_ANY, "")
sizer_download_button.Add(label_spacer_2, 0, wx.BOTTOM, 5)
sizer_download_button.Add(self.button['export_csv'], 0,
wx.TOP | wx.BOTTOM, 5)
sizer_condition_buttons.Add(sizer_download_button, 0, wx.ALL, 5)
label_spacer_3 = wx.StaticText(self.window_pane_query, wx.ID_ANY, "")
sizer_clear_button.Add(label_spacer_3, 0, wx.BOTTOM, 5)
sizer_clear_button.Add(self.button['clear'], 0, wx.TOP | wx.BOTTOM, 5)
sizer_condition_buttons.Add(sizer_clear_button, 0, wx.ALL, 5)
label_spacer_4 = wx.StaticText(self.window_pane_query, wx.ID_ANY, "")
sizer_auto_fit_columns_button.Add(label_spacer_4, 0, wx.BOTTOM, 5)
sizer_auto_fit_columns_button.Add(self.button['auto_fit_columns'], 0,
wx.ALL, 5)
sizer_condition_buttons.Add(sizer_auto_fit_columns_button, 0, wx.ALL,
5)
sizer_query.Add(sizer_condition_buttons, 0,
wx.BOTTOM | wx.EXPAND | wx.LEFT | wx.RIGHT, 5)
sizer_query_table.Add(self.list_ctrl_query_results, 1, wx.EXPAND, 0)
sizer_query.Add(sizer_query_table, 1, wx.ALL | wx.EXPAND, 5)
self.window_pane_query.SetSizer(sizer_query)
self.window_db_editor.SplitVertically(self.window_pane_db_tree,
self.window_pane_query)
sizer_wrapper.Add(self.window_db_editor, 1, wx.EXPAND, 0)
self.SetSizer(sizer_wrapper)
self.Layout()
self.Center()
def __do_bind(self):
# self.Bind(wx.EVT_TREE_SEL_CHANGED, self.OnTreeAdd, self.tree_ctrl_db, id=self.tree_ctrl_db.GetId())
# All buttons are bound to a function based on their key prepended with 'on_'
# For example, query button calls on_query when clicked
for key, button in self.button.items():
self.Bind(wx.EVT_BUTTON,
getattr(self, 'on_' + key),
id=button.GetId())
self.Bind(wx.EVT_CHECKBOX,
self.on_auto_backup,
id=self.checkbox_auto_backup.GetId())
self.Bind(wx.EVT_LIST_COL_CLICK, self.sort_query_results,
self.list_ctrl_query_results)
def on_auto_fit_columns(self, *evt):
self.data_query_results.set_column_widths(auto=True)
def on_tree_add(self, evt):
self.update_selected_tree_items()
# def UnselectOtherTables(self, selected_table):
# self.allow_tree_select_change = False
# for table, node in self.table_nodes.items():
# if table != selected_table:
# self.tree_ctrl_db.UnselectItem(node)
# self.allow_tree_select_change = True
def on_query(self, evt):
self.update_selected_tree_items()
table = self.combo_box_query_table.GetValue()
columns = [
c for c, sel in self.selected_columns[table].items()
if sel and c not in {'mrn', 'study_instance_uid'}
]
columns.sort()
if not columns:
columns = [
c for c in self.db_tree[table]
if c not in {'mrn', 'study_instance_uid'}
]
columns.insert(0, 'study_instance_uid')
columns.insert(0, 'mrn')
condition = self.text_ctrl_condition.GetValue()
with DVH_SQL() as cnx:
try:
data = cnx.query(table,
','.join(columns),
condition,
bokeh_cds=True)
self.data_query_results.set_data(data, columns)
except SQLError as e:
SQLErrorDialog(self, e)
self.data_query_results.clear()
def on_clear(self, evt):
self.data_query_results.clear()
@staticmethod
def get_db_tree():
tree = get_database_tree()
for table in list(tree):
tree[table] = [
column for column in tree[table] if 'string' not in column
]
return tree
def update_selected_tree_items(self):
for table, table_item in self.table_nodes.items():
self.selected_tables[table] = self.tree_ctrl_db.IsSelected(
table_item)
for column, column_item in self.column_nodes[table].items():
self.selected_columns[table][
column] = self.tree_ctrl_db.IsSelected(column_item)
def on_change_mrn_uid(self, evt):
self.change_or_delete_dlg(ChangePatientIdentifierDialog)
def on_delete_study(self, evt):
self.change_or_delete_dlg(DeletePatientDialog)
def change_or_delete_dlg(self, class_type):
selected_data = self.data_query_results.selected_row_data
if selected_data:
class_type(mrn=selected_data[0][0],
study_instance_uid=selected_data[0][1])
else:
class_type()
def on_reimport(self, evt):
selected_data = self.data_query_results.selected_row_data
if selected_data:
ReimportDialog(self.roi_map,
self.options,
mrn=selected_data[0][0],
study_instance_uid=selected_data[0][1])
else:
ReimportDialog(self.roi_map, self.options)
@staticmethod
def on_edit_db(evt):
EditDatabaseDialog()
@staticmethod
def on_calculations(evt):
CalculationsDialog()
def on_rebuild_db(self, evt):
RebuildDB(self, self.roi_map, self.options)
def on_delete_all_data(self, evt):
DeleteAllData(self, self.options)
def on_export_csv(self, evt):
save_data_to_file(self, "Export Data Table to CSV",
self.data_query_results.get_csv())
def on_remap_roi_names(self, evt):
RemapROIFrame(self.roi_map, remap_all=True)
def sort_query_results(self, evt):
self.data_query_results.sort_table(evt)
def on_auto_backup(self, *evt):
self.options.AUTO_SQL_DB_BACKUP = self.checkbox_auto_backup.GetValue()
# @staticmethod
# def on_plan_complexity(*evt):
# with wx.BusyCursor() as busy:
# recalculate_plan_complexities_from_beams()
def on_update_from_csv(self, *evt):
msg = "Load a CSV file and update your database. Please see manual for " \
"more information. Formatting is critical, this can not be undone!"
caption = "USE WITH EXTREME CAUTION"
ErrorDialog(self,
msg,
caption,
flags=wx.ICON_WARNING | wx.OK | wx.OK_DEFAULT)
with wx.FileDialog(self,
"Load CSV into Database",
style=wx.FD_FILE_MUST_EXIST
| wx.FD_OPEN) as fileDialog:
if fileDialog.ShowModal() == wx.ID_CANCEL:
return
pathname = fileDialog.GetPath()
with open(pathname, 'r') as fp:
lines = fp.readlines()
header_row = "table,column,value,condition"
if lines and header_row in lines[0].strip():
params = [csv_to_list(line.strip()) for line in lines[1:]]
ProgressFrame(params,
update_db_with_csv,
title="Update Database from CSV file",
action_msg="Processing row",
star_map=True)
else:
msg = "The selected file was not recognized. " \
"Be sure you have a header row of: %s" % header_row
caption = "CSV load failure"
ErrorDialog(self,
msg,
caption,
flags=wx.ICON_WARNING | wx.OK | wx.OK_DEFAULT)
class QueriedDataFrame(wx.Frame):
"""
Generate a simple table to view data of the current query for a specified SQL table
"""
def __init__(self, data_obj, columns, data_key, menu, menu_item_id):
"""
:param data_obj: object containing data to be viewed for each group
:type data_obj: dict
:param columns: columns to be displayed in table
:type columns: list
:param data_key: either 'DVHs', 'Plans', 'Beams', 'Rxs', or 'StatsData'
:type data_key: str
:param menu: a link to the main app menu, used to toggle Show/Hide status
:type menu: Menu
:param menu_item_id: the ID of the menu item associated with the specified data_obj
"""
wx.Frame.__init__(self, None, title='%s Data' % data_key[0:-1])
self.data = data_obj
self.columns = columns
self.sql_table = data_key
self.menu = menu
self.menu_item_id = menu_item_id
self.list_ctrl = wx.ListCtrl(self,
wx.ID_ANY,
style=wx.BORDER_SUNKEN | wx.LC_HRULES
| wx.LC_REPORT | wx.LC_VRULES)
self.button_export = wx.Button(self, wx.ID_ANY, "Export to CSV")
self.radio_button_query_group = wx.RadioBox(self,
wx.ID_ANY,
'Query Group',
choices=['1', '2'])
self.data_table = DataTable(self.list_ctrl)
self.data_table.set_data(self.table_data, self.columns)
if not self.data[2]:
self.radio_button_query_group.Disable()
self.__do_bind()
self.__set_properties()
self.__do_layout()
self.run()
def __set_properties(self):
self.SetSize(get_window_size(0.714, 0.762))
set_msw_background_color(self)
set_frame_icon(self)
def __do_bind(self):
self.Bind(wx.EVT_BUTTON, self.on_export, id=self.button_export.GetId())
self.Bind(wx.EVT_LIST_COL_CLICK, self.sort_table, self.list_ctrl)
self.Bind(wx.EVT_CLOSE, self.on_close)
self.Bind(wx.EVT_RADIOBOX,
self.on_group_select,
id=self.radio_button_query_group.GetId())
def __do_layout(self):
sizer_wrapper = wx.BoxSizer(wx.VERTICAL)
sizer_widgets = wx.BoxSizer(wx.HORIZONTAL)
sizer_button = wx.BoxSizer(wx.HORIZONTAL)
sizer_button.Add(self.button_export, 0, wx.TOP, 15)
sizer_widgets.Add(sizer_button, 0, wx.ALL, 10)
sizer_widgets.Add(self.radio_button_query_group, 0, wx.ALL, 10)
sizer_wrapper.Add(sizer_widgets, 0, 0, 0)
sizer_wrapper.Add(self.list_ctrl, 1,
wx.LEFT | wx.RIGHT | wx.BOTTOM | wx.EXPAND, 10)
self.SetSizer(sizer_wrapper)
self.Center()
@property
def table_data(self):
return {
column: getattr(self.selected_data, column)
for column in self.columns
}
@property
def selected_group(self):
return self.radio_button_query_group.GetSelection() + 1
@property
def selected_data(self):
return self.data[self.selected_group]
def run(self):
self.toggle_data_menu_item()
self.Show()
def on_close(self, *args):
self.toggle_data_menu_item()
self.Destroy()
def on_export(self, *args):
save_data_to_file(
self, "Export Group %s %s to CSV" %
(self.selected_group, self.sql_table), self.data_table.get_csv())
def toggle_data_menu_item(self):
short_cut = ['DVHs', 'Plans', 'Rxs', 'Beams'].index(self.sql_table) + 1
show_hide = ['Show',
'Hide']['Show' in self.menu.GetLabel(self.menu_item_id)]
self.menu.SetLabel(
self.menu_item_id,
'%s %s\tCtrl+%s' % (show_hide, self.sql_table, short_cut))
def sort_table(self, evt):
self.data_table.sort_table(evt)
def on_group_select(self, *evt):
self.data_table.clear()
self.data_table.set_data(self.table_data, self.columns)