def setUp(self):
try:
site_lab_profiles.register(MpepuInfantProfile())
except AlreadyRegistered:
pass
MpepuAppConfiguration().prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
study_site = StudySiteFactory()
content_type_map = ContentTypeMap.objects.get(
model='maternalconsent', app_label='mpepu_maternal')
consent_catalogue = ConsentCatalogueFactory(
content_type_map=content_type_map)
consent_catalogue.add_for_app = 'mpepu_infant'
consent_catalogue.save()
delivery_days_ago = 20
self.delivery_datetime = datetime.today() - timedelta(
days=delivery_days_ago - 3)
print "Consent a mother"
self.maternal_consent = MaternalConsentFactory(
study_site=study_site,
consent_datetime=datetime.today() -
timedelta(days=delivery_days_ago))
print "Consent: {}".format(self.maternal_consent)
m_registered_subject = RegisteredSubject.objects.get(
subject_identifier=self.maternal_consent.subject_identifier)
print 'check if mother is eligible'
self.maternal_eligibility = MaternalEligibilityPostFactory(
maternal_consent=self.maternal_consent,
registered_subject=m_registered_subject,
registration_datetime=datetime.today() -
timedelta(days=delivery_days_ago))
print 'get the 2000M visit'
self.m_appointment = Appointment.objects.get(
registered_subject=m_registered_subject,
visit_definition__code='2000M')
print 'create a maternal visit for the 2000M visit'
self.maternal_visit = MaternalVisitFactory(
appointment=self.m_appointment,
report_datetime=datetime.today() -
timedelta(days=delivery_days_ago))
print 'create a maternal_lab_del registering 2 of 2 infants'
self.maternal_lab_del = MaternalLabDelFactory(
maternal_visit=self.maternal_visit,
live_infants=1,
live_infants_to_register=1,
delivery_datetime=self.delivery_datetime,
has_ga='Yes',
ga=37,
)
print 'maternal lab del: {}'.format(self.maternal_lab_del)
def setUp(self):
try:
site_lab_profiles.register(MpepuInfantProfile())
except AlreadyRegistered:
pass
MpepuAppConfiguration().prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
self.study_site = StudySiteFactory()
content_type_map = ContentTypeMap.objects.get(model='maternalconsent', app_label='mpepu_maternal')
consent_catalogue = ConsentCatalogueFactory(content_type_map=content_type_map)
consent_catalogue.add_for_app = 'mpepu_infant'
consent_catalogue.save()
def test_maternal_eligibility(self):
site_lab_tracker.autodiscover()
study_specific = StudySpecificFactory()
StudySiteFactory()
content_type_map_helper = ContentTypeMapHelper()
content_type_map_helper.populate()
content_type_map_helper.sync()
content_type_map = ContentTypeMap.objects.get(
model__iexact=ResistanceConsent._meta.object_name)
ConsentCatalogueFactory(
name=self.app_label,
content_type_map=content_type_map,
consent_type='sub-study',
version=1,
start_datetime=study_specific.study_start_datetime,
end_datetime=datetime(datetime.today().year + 5, 1, 1),
add_for_app=self.app_label)
maternal_consent = MaternalConsentFactory(first_name='MELISSA',
gender='F',
dob='1994-03-25',
identity='111121111')
self.assertEqual(MaternalConsent.objects.all().count(), 1)
print maternal_consent.subject_identifier
resistance_consent = ResistanceConsentFactory(first_name='MELISSA',
gender='F',
dob='1994-03-25',
identity='111121111')
self.assertEqual(ResistanceConsent.objects.all().count(), 1)
print resistance_consent.subject_identifier
print 'resistance consent does exists'
print 'assert there is no eligibility'
self.assertEqual(ResistanceEligibility.objects.all().count(), 0)
print 'create eligibility for mother'
eligibility = ResistanceEligibilityFactory(co_enrolled='Yes',
status_evidence='Yes',
lates_cd4=250,
who_illness='No')
self.assertEqual(ResistanceEligibility.objects.all().count(), 1)
print eligibility
def test_p1(self):
site_lab_tracker.autodiscover()
study_specific = StudySpecificFactory()
StudySiteFactory()
content_type_map_helper = ContentTypeMapHelper()
content_type_map_helper.populate()
content_type_map_helper.sync()
content_type_map = ContentTypeMap.objects.get(model__iexact=ResistanceConsent._meta.object_name)
ConsentCatalogueFactory(
name=self.app_label,
content_type_map=content_type_map,
consent_type='sub-study',
version=1,
start_datetime=study_specific.study_start_datetime,
end_datetime=datetime(datetime.today().year + 5, 1, 1),
add_for_app=self.app_label)
print 'confirming that a maternal consent exists'
consent = MaternalConsentFactory(first_name='MELISSA', gender='F', dob='1994-03-25', identity='111121111')
self.assertEqual(MaternalConsent.objects.all().count(), 1)
print consent.subject_identifier
print 'assert one maternal consent registers one registered_subject'
self.assertEqual(MaternalConsent.objects.all().count(), RegisteredSubject.objects.all().count())
print 'consent first resistance mother'
consent1 = ResistanceConsentFactory(first_name='MELISSA', gender='F', dob='1994-03-25', identity='111121111')
self.assertEqual(ResistanceConsent.objects.all().count(), 1)
print consent1.subject_identifier
print 'assert that the subject identifier of both consents remains the same'
self.assertEqual(consent.subject_identifier, consent1.subject_identifier)
print 'assert that the subject identifier on consent1 == subject identifier in registered_subject'
self.assertEqual(consent1.subject_identifier, RegisteredSubject.objects.get(subject_identifier=consent1.subject_identifier).subject_identifier)
def setUp(self):
try:
site_lab_profiles.register(MpepuInfantProfile())
except AlreadyRegistered:
pass
MpepuAppConfiguration().prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
admin.autodiscover()
study_site = StudySiteFactory()
content_type_map = ContentTypeMap.objects.get(
model='maternalconsent', app_label='mpepu_maternal')
consent_catalogue = ConsentCatalogueFactory(
content_type_map=content_type_map)
consent_catalogue.add_for_app = 'mpepu_infant'
consent_catalogue.save()
self.delivery_days_ago = 20
self.delivery_datetime = datetime.today() - timedelta(
days=self.delivery_days_ago - 3)
print "Consent a mother"
self.maternal_consent = MaternalConsentFactory(
study_site=study_site,
consent_datetime=datetime.today() -
timedelta(days=self.delivery_days_ago))
print "Consent: {}".format(self.maternal_consent)
registered_subject = RegisteredSubject.objects.get(
subject_identifier=self.maternal_consent.subject_identifier)
print 'check if mother is eligible'
maternal_eligibility = MaternalEligibilityPostFactory(
maternal_consent=self.maternal_consent,
registered_subject=registered_subject,
registration_datetime=datetime.today() -
timedelta(days=self.delivery_days_ago))
print 'get the 2000M visit'
appointment = Appointment.objects.get(
registered_subject=registered_subject,
visit_definition__code='2000M')
print 'create a maternal visit for the 2000M visit'
maternal_visit = MaternalVisitFactory(
appointment=appointment,
report_datetime=datetime.today() -
timedelta(days=self.delivery_days_ago))
print 'create a maternal_lab_del registering 2 of 2 infants'
self.maternal_lab_del = MaternalLabDelFactory(
maternal_visit=maternal_visit,
live_infants=2,
live_infants_to_register=2,
delivery_datetime=self.delivery_datetime,
has_ga='Yes',
ga=37,
)
print 'maternal lab del: {}'.format(self.maternal_lab_del)
print 'get registered subject of the first infant'
self.registered_subject1 = RegisteredSubject.objects.filter(
relative_identifier=self.maternal_consent.subject_identifier
).order_by('subject_identifier')[0]
print 'first registered subject {}'.format(self.registered_subject1)
self.infant_birth1 = InfantBirthFactory(
registered_subject=self.registered_subject1,
maternal_lab_del=self.maternal_lab_del,
dob=self.delivery_datetime.date())
print 'first infant birth {}'.format(self.infant_birth1)
appointment1 = Appointment.objects.get(
registered_subject=self.registered_subject1,
visit_definition__code='2000')
infant_visit1 = InfantVisitFactory(appointment=appointment1,
report_datetime=datetime.today(),
reason='scheduled',
study_status='onstudy notrando')
print 'get registered subject of the second infant'
self.registered_subject2 = RegisteredSubject.objects.filter(
relative_identifier=self.maternal_consent.subject_identifier
).order_by('subject_identifier')[1]
print 'second registered subject {}'.format(self.registered_subject2)
self.infant_birth2 = InfantBirthFactory(
registered_subject=self.registered_subject2,
maternal_lab_del=self.maternal_lab_del,
dob=self.delivery_datetime.date())
print 'second infant birth {}'.format(self.infant_birth2)
appointment2 = Appointment.objects.get(
registered_subject=self.registered_subject2,
visit_definition__code='2000')
infant_visit2 = InfantVisitFactory(appointment=appointment2,
report_datetime=datetime.today(),
reason='scheduled',
study_status='onstudy notrando')
def setUp(self):
try:
site_lab_profiles.register(MpepuInfantProfile())
except AlreadyRegistered:
pass
MpepuAppConfiguration().prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
study_site = StudySiteFactory()
content_type_map = ContentTypeMap.objects.get(
model='maternalconsent', app_label='mpepu_maternal')
consent_catalogue = ConsentCatalogueFactory(
content_type_map=content_type_map)
consent_catalogue.add_for_app = 'mpepu_infant'
consent_catalogue.save()
delivery_days_ago = 20
delivery_datetime = datetime.today() - timedelta(
days=delivery_days_ago - 3)
# print "Consent a mother"
self.maternal_consent = MaternalConsentFactory(
study_site=study_site,
consent_datetime=datetime.today() -
timedelta(days=delivery_days_ago))
# print "Consent: {}".format(self.maternal_consent)
self.registered_subject = RegisteredSubject.objects.get(
subject_identifier=self.maternal_consent.subject_identifier)
# print 'check if mother is eligible'
self.maternal_eligibility = MaternalEligibilityPostFactory(
maternal_consent=self.maternal_consent,
registered_subject=self.registered_subject,
registration_datetime=datetime.today() -
timedelta(days=delivery_days_ago))
# print 'get the 2000M visit'
self.m_appointment = Appointment.objects.get(
registered_subject=self.registered_subject,
visit_definition__code='2000M')
# print 'create a maternal visit for the 2000M visit'
self.maternal_visit = MaternalVisitFactory(
appointment=self.m_appointment,
report_datetime=datetime.today() -
timedelta(days=delivery_days_ago))
# print 'create a maternal_lab_del registering 2 of 2 infants'
self.maternal_lab_del = MaternalLabDelFactory(
maternal_visit=self.maternal_visit,
live_infants=1,
live_infants_to_register=1,
delivery_datetime=delivery_datetime,
has_ga='Yes',
ga=37,
)
# print 'maternal lab del: {}'.format(self.maternal_lab_del)
# print 'get registered subject of the infant'
self.registered_subject = RegisteredSubject.objects.filter(
relative_identifier=self.maternal_consent.subject_identifier
).order_by('subject_identifier')[0]
print 'infant registered subject {}'.format(self.registered_subject)
self.infant_birth = InfantBirthFactory(
registered_subject=self.registered_subject,
maternal_lab_del=self.maternal_lab_del,
dob=delivery_datetime.date())
# print 'infant birth {}'.format(self.infant_birth)
self.appointment = Appointment.objects.get(
registered_subject=self.registered_subject,
visit_definition__code='2000')
self.infant_visit = InfantVisitFactory(
appointment=self.appointment,
report_datetime=datetime.today(),
reason='scheduled',
study_status='onstudy notrando')
self.infant_eligibility = InfantEligibilityFactory(
infant_birth=self.infant_birth,
registered_subject=self.registered_subject)
# print 'infant eligibility {}'.format(self.infant_eligibility)
self.app_2010 = Appointment.objects.get(
registered_subject=self.registered_subject,
visit_definition__code='2010')
self.visit_2010 = InfantVisitFactory(
appointment=self.app_2010,
report_datetime=datetime.today(),
reason='scheduled',
study_status='onstudy rando today')
self.app_2020 = Appointment.objects.get(
registered_subject=self.registered_subject,
visit_definition__code='2020')
self.visit_2020 = InfantVisitFactory(
appointment=self.app_2020,
report_datetime=datetime.today(),
reason='scheduled',
study_status='onstudy rando ondrug')
self.app_2030 = Appointment.objects.get(
registered_subject=self.registered_subject,
visit_definition__code='2030')
self.visit_2030 = InfantVisitFactory(
appointment=self.app_2030,
report_datetime=datetime.today(),
reason='scheduled',
study_status='onstudy rando ondrug')
def test_p1(self):
try:
site_lab_profiles.register(MpepuMaternalProfile())
except AlreadyRegistered:
pass
MpepuAppConfiguration().prepare()
site_lab_tracker.autodiscover()
StudySpecificFactory()
study_site = StudySiteFactory()
MpepuAppConfiguration().prepare()
content_type_map_helper = ContentTypeMapHelper()
content_type_map_helper.populate()
content_type_map_helper.sync()
print 'setup the consent catalogue for app {0}'.format(self.app_label)
content_type_map = ContentTypeMap.objects.get(
content_type__model=self.subject_consent._meta.object_name.lower())
consent_catalogue = ConsentCatalogueFactory(
name=self.consent_catalogue_name,
content_type_map=content_type_map)
consent_catalogue.add_for_app = self.app_label
consent_catalogue.save()
print 'setup bhp_visit'
content_type_map = ContentTypeMap.objects.get(
content_type__model=MaternalEligibilityAnte._meta.object_name.
lower())
membership_form = MembershipFormFactory(
content_type_map=content_type_map)
schedule_group = ScheduleGroupFactory(
membership_form=membership_form,
group_name='Maternal Ante Natal Reg',
grouping_key='ELIGIBILITY')
visit_definition = VisitDefinitionFactory(
code='1000M',
title='Maternal Ante Natal Registration',
grouping='maternal')
visit_definition.schedule_group.add(schedule_group)
content_type_map = ContentTypeMap.objects.get(
content_type__model=MaternalEligibilityPost._meta.object_name.
lower())
membership_form = MembershipFormFactory(
content_type_map=content_type_map)
schedule_group = ScheduleGroupFactory(
membership_form=membership_form,
group_name='Maternal Post Partum Reg',
grouping_key='ELIGIBILITY')
visit_definition = VisitDefinitionFactory(
code='2000M',
title='Maternal Post Natal Registration',
grouping='maternal')
visit_definition.schedule_group.add(schedule_group)
content_type_map = ContentTypeMap.objects.get(
content_type__model=MaternalPostReg._meta.object_name.lower())
membership_form = MembershipFormFactory(
content_type_map=content_type_map)
schedule_group = ScheduleGroupFactory(
membership_form=membership_form,
group_name='Post Partum Follow-up')
visit_definition = VisitDefinitionFactory(code='2010M',
title='Infant Randomization',
grouping='maternal')
visit_definition.schedule_group.add(schedule_group)
print 'consent a mother (2 days ago)'
maternal_consent = MaternalConsentFactory(
study_site=study_site,
consent_datetime=datetime.today() - timedelta(days=2))
print maternal_consent.subject_identifier
print 'get maternal registered subject'
registered_subject = RegisteredSubject.objects.get(
subject_identifier=maternal_consent.subject_identifier)
print 'take mother off study (1 day ago)'
maternal_off_study = MaternalOffStudyFactory(
registered_subject=registered_subject,
offstudy_date=date.today() - timedelta(days=1))
print 'Off study: {0}'.format(maternal_off_study)
print 'confirm cannot add a registration form today'
self.assertRaises(SubjectOffStudyError,
MaternalEligibilityAnteFactory,
maternal_consent=maternal_consent,
registered_subject=registered_subject,
registration_datetime=datetime.today() -
timedelta(days=0))
print 'consent a mother (3 days ago)'
maternal_consent = MaternalConsentFactory(
study_site=study_site,
consent_datetime=datetime.today() - timedelta(days=3))
print maternal_consent.subject_identifier
print 'get maternal registered subject'
registered_subject = RegisteredSubject.objects.get(
subject_identifier=maternal_consent.subject_identifier)
print 'add a registration form 2 days ago'
maternal_eligibility = MaternalEligibilityAnteFactory(
maternal_consent=maternal_consent,
registered_subject=registered_subject,
registration_datetime=datetime.today() - timedelta(days=2))
print 'confirm appointments'
appointment = Appointment.objects.get(
registered_subject=registered_subject,
visit_definition__code='1000M')
print 'Appointment {0} {1}'.format(appointment,
appointment.appt_datetime)
print 'take mother off study (1 day ago)'
maternal_off_study = MaternalOffStudyFactory(
registered_subject=registered_subject,
offstudy_date=appointment.appt_datetime - timedelta(days=1))
print 'Off study: {0} offstudy_datetime={1}'.format(
maternal_off_study,
date.today() - timedelta(days=1))
print 'confirm appointments deleted'
self.assertEquals(
Appointment.objects.filter(registered_subject=registered_subject,
visit_definition__code='1000M').count(),
0)
print 'consent a mother (4 days ago)'
maternal_consent = MaternalConsentFactory(
study_site=study_site,
consent_datetime=datetime.today() - timedelta(days=4))
print maternal_consent.subject_identifier
print 'get maternal registered subject'
registered_subject = RegisteredSubject.objects.get(
subject_identifier=maternal_consent.subject_identifier)
print 'add a registration form 3 days ago'
maternal_eligibility = MaternalEligibilityAnteFactory(
maternal_consent=maternal_consent,
registered_subject=registered_subject,
registration_datetime=datetime.today() - timedelta(days=3))
print 'confirm appointments'
appointment = Appointment.objects.get(
registered_subject=registered_subject,
visit_definition__code='1000M')
print 'add a visit form 2 days ago'
appointment = Appointment.objects.get(
registered_subject=registered_subject,
visit_definition__code='1000M')
maternal_visit = MaternalVisitFactory(
appointment=appointment,
report_datetime=datetime.today() - timedelta(days=2))
print 'confirm cannot take mother off study (3 day ago)'
self.assertRaises(SubjectOffStudyDateError,
MaternalOffStudyFactory,
registered_subject=registered_subject,
offstudy_date=date.today() - timedelta(days=3))
print 'confirm can take mother off study (2 day ago)'
maternal_off_study = MaternalOffStudyFactory(
registered_subject=registered_subject,
offstudy_date=date.today() - timedelta(days=2))
print 'Off study: {0}'.format(maternal_off_study)
print 'confirm appointments not deleted'
self.assertEquals(
Appointment.objects.filter(registered_subject=registered_subject,
visit_definition__code='1000M').count(),
1)
def test_p3(self):
site_lab_tracker.autodiscover()
StudySpecificFactory()
study_site = StudySiteFactory()
content_type_map_helper = ContentTypeMapHelper()
content_type_map_helper.populate()
content_type_map_helper.sync()
print 'setup the consent catalogue for app {0}'.format(self.app_label)
content_type_map = ContentTypeMap.objects.get(
content_type__model=self.subject_consent._meta.object_name.lower())
consent_catalogue = ConsentCatalogueFactory(
name=self.consent_catalogue_name,
content_type_map=content_type_map)
consent_catalogue.add_for_app = self.app_label
consent_catalogue.save()
print 'setup bhp_visit'
content_type_map = ContentTypeMap.objects.get(
content_type__model=MaternalEligibilityAnte._meta.object_name.
lower())
membership_form = MembershipFormFactory(
content_type_map=content_type_map)
schedule_group = ScheduleGroupFactory(
membership_form=membership_form,
group_name='Maternal Ante Natal Reg',
grouping_key='ELIGIBILITY')
visit_definition = VisitDefinitionFactory(
code='1000M',
title='Maternal Ante Natal Registration',
grouping='maternal')
visit_definition.schedule_group.add(schedule_group)
content_type_map = ContentTypeMap.objects.get(
content_type__model=MaternalEligibilityPost._meta.object_name.
lower())
membership_form = MembershipFormFactory(
content_type_map=content_type_map)
schedule_group = ScheduleGroupFactory(
membership_form=membership_form,
group_name='Maternal Post Partum Reg',
grouping_key='ELIGIBILITY')
visit_definition = VisitDefinitionFactory(
code='2000M',
title='Maternal Post Natal Registration',
grouping='maternal')
visit_definition.schedule_group.add(schedule_group)
content_type_map = ContentTypeMap.objects.get(
content_type__model=MaternalPostReg._meta.object_name.lower())
membership_form = MembershipFormFactory(
content_type_map=content_type_map)
schedule_group = ScheduleGroupFactory(
membership_form=membership_form,
group_name='Post Partum Follow-up')
visit_definition = VisitDefinitionFactory(code='2010M',
title='Infant Randomization',
grouping='maternal')
visit_definition.schedule_group.add(schedule_group)
print 'consent a mother'
maternal_consent = MaternalConsentFactory(study_site=study_site)
print maternal_consent.subject_identifier
print 'get subject registered subject'
registered_subject = RegisteredSubject.objects.get(
subject_identifier=maternal_consent.subject_identifier)
print 'enroll mother ante natal'
maternal_eligibility_ante = MaternalEligibilityAnteFactory(
maternal_consent=maternal_consent,
registered_subject=registered_subject)
instances = [maternal_eligibility_ante]
print 'test natural key / get_by_natural_key on subject_visit'
appointment = Appointment.objects.get(
registered_subject=registered_subject,
visit_definition__code='1000M')
subject_visit = MaternalVisitFactory(appointment=appointment)
instances.append(subject_visit)
print 'NOTE, not all models tested'
print 'test serialization.'
self.serialize_deserialize(instances)
def test_p1(self):
study_site = StudySiteFactory()
content_type_map = ContentTypeMap.objects.get(
model='maternalconsent', app_label='mpepu_maternal')
consent_catalogue = ConsentCatalogueFactory(
content_type_map=content_type_map)
consent_catalogue.add_for_app = 'mpepu_infant'
consent_catalogue.save()
print 'consent a mother (30 days ago)'
maternal_consent = MaternalConsentFactory(
study_site=study_site,
consent_datetime=datetime.today() - timedelta(days=30))
print maternal_consent.subject_identifier
print 'get maternal registered subject'
registered_subject = RegisteredSubject.objects.get(
subject_identifier=maternal_consent.subject_identifier)
print 'add a registration form 30 days ago'
maternal_eligibility = MaternalEligibilityAnteFactory(
maternal_consent=maternal_consent,
registered_subject=registered_subject,
registration_datetime=datetime.today() - timedelta(days=30))
print 'add a visit form 28 days ago'
appointment = Appointment.objects.get(
registered_subject=registered_subject,
visit_definition__code='1000M')
maternal_visit = MaternalVisitFactory(
appointment=appointment,
report_datetime=datetime.today() - timedelta(days=28))
print 'create a maternal lab-del: registering 2 of 1 infant'
delivery_datetime = datetime.today() - timedelta(days=28)
maternal_lab_del = MaternalLabDelFactory(
maternal_visit=maternal_visit,
live_infants=2,
live_infants_to_register=1,
delivery_datetime=delivery_datetime)
print maternal_lab_del
print 'confirm infant subject identifier in bhp_identifier.models.SubjectIdentifier and follows derived format {0}'.format(
'{0}-25'.format(maternal_consent.subject_identifier))
self.assertIsNotNone(
SubjectIdentifier.objects.get(identifier='{0}-25'.format(
maternal_consent.subject_identifier)))
print 'confirm infant registered subject exists'
registered_subject = RegisteredSubject.objects.get(
relative_identifier=maternal_consent.subject_identifier)
print registered_subject
print 'complete infant birth'
infant_birth = InfantBirthFactory(
registered_subject=registered_subject,
maternal_lab_del=maternal_lab_del,
dob=date(delivery_datetime.year, delivery_datetime.month,
delivery_datetime.day))
print infant_birth
print 'add a visit'
appointment = Appointment.objects.get(
registered_subject=registered_subject,
visit_definition__code='2000')
infant_visit = InfantVisitFactory(appointment=appointment,
report_datetime=datetime.today(),
reason='scheduled',
study_status='onstudy notrando')
print 'complete infant eligibility'
infant_eligibility = InfantEligibilityFactory(
infant_birth=infant_birth, registered_subject=registered_subject)
print 'complete infant birth data'
infant_birth_data = InfantBirthDataFactory(infant_visit=infant_visit,
infant_birth=infant_birth)
print 'complete off study model'
infant_off_study = InfantOffStudyFactory(
registered_subject=registered_subject,
offstudy_date=date.today() - timedelta(days=0),
infant_visit=infant_visit)
print 'confirm can still save scheduled model'
infant_birth_data.save()
print 'consent a mother (30 days ago)'
maternal_consent = MaternalConsentFactory(
study_site=study_site,
consent_datetime=datetime.today() - timedelta(days=30))
print maternal_consent.subject_identifier
print 'get maternal registered subject'
registered_subject = RegisteredSubject.objects.get(
subject_identifier=maternal_consent.subject_identifier)
print 'add a registration form 30 days ago'
maternal_eligibility = MaternalEligibilityAnteFactory(
maternal_consent=maternal_consent,
registered_subject=registered_subject,
registration_datetime=datetime.today() - timedelta(days=30))
print 'add a visit form 28 days ago'
appointment = Appointment.objects.get(
registered_subject=registered_subject,
visit_definition__code='1000M')
maternal_visit = MaternalVisitFactory(
appointment=appointment,
report_datetime=datetime.today() - timedelta(days=28))
print 'create a maternal lab-del: registering 2 of 1 infant'
delivery_datetime = datetime.today() - timedelta(days=28)
maternal_lab_del = MaternalLabDelFactory(
maternal_visit=maternal_visit,
live_infants=2,
live_infants_to_register=1,
delivery_datetime=delivery_datetime)
print maternal_lab_del
print 'confirm infant subject identifier in bhp_identifier.models.SubjectIdentifier and follows derived format {0}'.format(
'{0}-25'.format(maternal_consent.subject_identifier))
self.assertIsNotNone(
SubjectIdentifier.objects.get(identifier='{0}-25'.format(
maternal_consent.subject_identifier)))
print 'confirm infant registered subject exists'
registered_subject = RegisteredSubject.objects.get(
relative_identifier=maternal_consent.subject_identifier)
print registered_subject
print 'complete infant birth'
infant_birth = InfantBirthFactory(
registered_subject=registered_subject,
maternal_lab_del=maternal_lab_del,
dob=date(delivery_datetime.year, delivery_datetime.month,
delivery_datetime.day))
print infant_birth
print 'add a visit 1 day ago'
appointment = Appointment.objects.get(
registered_subject=registered_subject,
visit_definition__code='2000')
infant_visit = InfantVisitFactory(appointment=appointment,
report_datetime=datetime.today() -
timedelta(days=1),
reason='scheduled',
study_status='onstudy notrando')
print 'complete off study model'
infant_off_study = InfantOffStudyFactory(
registered_subject=registered_subject,
offstudy_date=date.today() - timedelta(days=1),
infant_visit=infant_visit)
print 'confirm cannot add a visit'
appointment = Appointment.objects.get(
registered_subject=registered_subject,
visit_definition__code='2000')
self.assertRaises(SubjectOffStudyError,
InfantVisitFactory,
appointment=appointment,
report_datetime=datetime.today(),
reason='scheduled',
study_status='onstudy notrando')
print 'remove off study'
infant_off_study.delete()
infant_off_study = InfantOffStudyFactory(
registered_subject=registered_subject,
offstudy_date=date.today() - timedelta(days=1),
infant_visit=infant_visit)
print 'assert cannot complete infant eligibility for today'
self.assertRaises(SubjectOffStudyError,
InfantEligibilityFactory,
infant_birth=infant_birth,
registered_subject=registered_subject)
print 'remove off study'
infant_off_study.delete()
print 'complete infant birth data'
infant_birth_data = InfantBirthDataFactory(infant_visit=infant_visit,
infant_birth=infant_birth)
print 'complete off study model'
infant_off_study = InfantOffStudyFactory(
registered_subject=registered_subject,
offstudy_date=date.today() - timedelta(days=1),
infant_visit=infant_visit)
print 'confirm cannot add an off study with younger data already entered (3 days ago)'
self.assertRaises(SubjectOffStudyDateError,
InfantOffStudyFactory,
registered_subject=registered_subject,
offstudy_date=date.today() - timedelta(days=3))
def setUp(self):
try:
site_lab_profiles.register(MpepuInfantProfile())
except AlreadyRegistered:
pass
MpepuAppConfiguration().prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
study_site = StudySiteFactory()
content_type_map = ContentTypeMap.objects.get(
model='maternalconsent', app_label='mpepu_maternal')
consent_catalogue = ConsentCatalogueFactory(
content_type_map=content_type_map)
consent_catalogue.add_for_app = 'mpepu_infant'
consent_catalogue.save()
print "register a mother "
delivery_days_ago = 20
delivery_datetime = datetime.today() - timedelta(
days=delivery_days_ago - 3)
maternal_consent = MaternalConsentFactory(
study_site=study_site,
consent_datetime=datetime.today() -
timedelta(days=delivery_days_ago))
print "Consent: {}".format(maternal_consent)
m_registered_subject = RegisteredSubject.objects.get(
subject_identifier=maternal_consent.subject_identifier)
maternal_eligibility = MaternalEligibilityPostFactory(
maternal_consent=maternal_consent,
registered_subject=m_registered_subject,
registration_datetime=datetime.today() -
timedelta(days=delivery_days_ago))
appointment = Appointment.objects.get(
registered_subject=m_registered_subject,
visit_definition__code='2000M')
maternal_visit = MaternalVisitFactory(
appointment=appointment,
report_datetime=datetime.today() -
timedelta(days=delivery_days_ago))
print 'create a maternal_lab_del registering 2 of 2 infants'
maternal_lab_del = MaternalLabDelFactory(
maternal_visit=maternal_visit,
live_infants=2,
live_infants_to_register=2,
delivery_datetime=delivery_datetime,
has_ga='Yes',
ga=37,
)
print 'maternal lab del: {}'.format(maternal_lab_del)
print 'register infant 1 of 2'
self.registered_subject1 = RegisteredSubject.objects.filter(
relative_identifier=maternal_consent.subject_identifier).order_by(
'subject_identifier')[0]
print 'first registered subject {}'.format(self.registered_subject1)
self.infant_birth1 = InfantBirthFactory(
registered_subject=self.registered_subject1,
maternal_lab_del=maternal_lab_del,
dob=delivery_datetime.date())
print 'first infant birth {}'.format(self.infant_birth1)
self.infant_eligibility1 = InfantEligibilityFactory(
infant_birth=self.infant_birth1,
registered_subject=self.infant_birth1.registered_subject,
clinical_jaundice='No',
anemia_neutropenia='No',
hiv_result_reference='PENDING',
maternal_feeding_choice='BF',
maternal_art_status='ON',
rando_bf_duration='Yes',
ctx_contra='No',
congen_anomaly='No',
randomization_site='Gaborone',
)
print 'First infant Eligibility {}'.format(self.infant_eligibility1)
print "register infant 2 of 2"
self.registered_subject2 = RegisteredSubject.objects.filter(
relative_identifier=maternal_consent.subject_identifier).order_by(
'subject_identifier')[1]
print 'second registered subject {}'.format(self.registered_subject2)
infant_birth2 = InfantBirthFactory(
registered_subject=self.registered_subject2,
maternal_lab_del=maternal_lab_del,
dob=delivery_datetime.date())
print 'second infant birth {}'.format(infant_birth2)
self.registered_subject2.dob = infant_birth2.dob
self.registered_subject2.gender = infant_birth2.gender
self.registered_subject2.initials = infant_birth2.initials
self.registered_subject2.relative_identifier = m_registered_subject.subject_identifier
self.registered_subject2.save()