def enroll(subject_identifier=None):
subject_identifier = subject_identifier or "1111111"
site_reference_configs.registry = {}
reference = ReferenceModelConfig(
name="edc_action_item.CrfLongitudinalOne",
fields=["f1", "f2", "f3"])
site_reference_configs.register(reference)
site_visit_schedules._registry = {}
site_visit_schedules.loaded = False
site_visit_schedules.register(visit_schedule)
site_reference_configs.register_from_visit_schedule(
visit_models={
"edc_appointment.appointment": "edc_metadata.subjectvisit"
})
subject_consent = SubjectConsent.objects.create(
subject_identifier=subject_identifier,
consent_datetime=get_utcnow())
_, schedule = site_visit_schedules.get_by_onschedule_model(
"edc_metadata.onschedule")
schedule.put_on_schedule(
subject_identifier=subject_consent.subject_identifier,
onschedule_datetime=subject_consent.consent_datetime,
)
return subject_identifier
def setUp(self):
self.panel_one = Panel.objects.create(name="one")
self.panel_two = Panel.objects.create(name="two")
for name in ["three", "four", "five", "six"]:
Panel.objects.create(name=name)
site_visit_schedules._registry = {}
site_visit_schedules.loaded = False
site_visit_schedules.register(visit_schedule)
register_to_site_reference_configs()
site_reference_configs.register_from_visit_schedule(
visit_models={"edc_appointment.appointment": "edc_metadata.subjectvisit"}
)
self.subject_identifier = "1111111"
self.assertEqual(CrfMetadata.objects.all().count(), 0)
self.assertEqual(RequisitionMetadata.objects.all().count(), 0)
subject_consent = SubjectConsent.objects.create(
subject_identifier=self.subject_identifier, consent_datetime=get_utcnow()
)
_, self.schedule = site_visit_schedules.get_by_onschedule_model(
"edc_metadata.onschedule"
)
self.schedule.put_on_schedule(
subject_identifier=self.subject_identifier,
onschedule_datetime=subject_consent.consent_datetime,
)
self.appointment = Appointment.objects.get(
subject_identifier=self.subject_identifier,
visit_code=self.schedule.visits.first.code,
)
def setUp(self):
self.panel_one = Panel.objects.create(name='one')
self.panel_two = Panel.objects.create(name='two')
import_holidays()
register_to_site_reference_configs()
site_visit_schedules._registry = {}
site_visit_schedules.loaded = False
site_visit_schedules.register(visit_schedule)
site_reference_configs.register_from_visit_schedule(
visit_models={
'edc_appointment.appointment': 'edc_metadata.subjectvisit'})
self.subject_identifier = '1111111'
self.assertEqual(CrfMetadata.objects.all().count(), 0)
self.assertEqual(RequisitionMetadata.objects.all().count(), 0)
subject_consent = SubjectConsent.objects.create(
subject_identifier=self.subject_identifier,
consent_datetime=get_utcnow())
_, self.schedule = site_visit_schedules.get_by_onschedule_model(
'edc_metadata.onschedule')
self.schedule.put_on_schedule(
subject_identifier=self.subject_identifier,
onschedule_datetime=subject_consent.consent_datetime)
self.appointment = Appointment.objects.get(
subject_identifier=self.subject_identifier,
visit_code=self.schedule.visits.first.code)
def register_new_visit_schedule(crfs):
site_visit_schedules._registry = {}
site_visit_schedules.loaded = False
visit = Visit(
code="1000",
title="Week 1",
timepoint=0,
rbase=relativedelta(days=0),
rlower=relativedelta(days=0),
rupper=relativedelta(days=6),
crfs=crfs,
allow_unscheduled=True,
facility_name="5-day-clinic",
)
schedule = Schedule(
name="schedule",
onschedule_model="edc_metadata.onschedule",
offschedule_model="edc_metadata.offschedule",
consent_model="edc_metadata.subjectconsent",
appointment_model="edc_appointment.appointment",
)
schedule.add_visit(visit)
new_visit_schedule = VisitSchedule(
name="visit_schedule",
offstudy_model="edc_metadata.subjectoffstudy",
death_report_model="edc_metadata.deathreport",
)
new_visit_schedule.add_schedule(schedule)
site_visit_schedules.register(new_visit_schedule)
def setUp(self):
self.subject_identifier = "12345"
site_visit_schedules._registry = {}
site_visit_schedules.register(visit_schedule=visit_schedule3)
self.helper = self.helper_cls(
subject_identifier=self.subject_identifier,
now=Protocol().study_open_datetime,
)
def setUp(self) -> None:
site_visit_schedules._registry = {}
site_visit_schedules.loaded = False
site_visit_schedules.register(visit_schedule)
self.subject_identifier = "12345"
RegisteredSubject.objects.create(
subject_identifier=self.subject_identifier)
report_datetime = get_utcnow()
creator = AppointmentsCreator(
subject_identifier=self.subject_identifier,
visit_schedule=visit_schedule,
schedule=schedule,
report_datetime=report_datetime,
)
creator.create_appointments(base_appt_datetime=report_datetime)
self.assertGreater(
Appointment.objects.filter(
subject_identifier=self.subject_identifier).count(),
0,
)
self.medication = Medication.objects.create(name="Flucytosine", )
self.formulation = Formulation.objects.create(
medication=self.medication,
strength=500,
units=Units.objects.get(name="mg"),
route=Route.objects.get(display_name="Oral"),
formulation_type=FormulationType.objects.get(
display_name__iexact="Tablet"),
)
self.dosage_guideline_100 = DosageGuideline.objects.create(
medication=self.medication,
dose_per_kg=100,
dose_units=Units.objects.get(name="mg"),
frequency=1,
frequency_units=FrequencyUnits.objects.get(name="day"),
)
self.dosage_guideline_200 = DosageGuideline.objects.create(
medication=self.medication,
dose_per_kg=100,
dose_units=Units.objects.get(name="mg"),
frequency=2,
frequency_units=FrequencyUnits.objects.get(name="day"),
)
self.rx = Rx.objects.create(
subject_identifier=self.subject_identifier,
weight_in_kgs=40,
report_datetime=report_datetime,
medication=self.medication,
)
def setUp(self):
self.subject_identifier = "12345"
site_visit_schedules._registry = {}
site_visit_schedules.register(visit_schedule=visit_schedule1)
site_visit_schedules.register(visit_schedule=visit_schedule2)
self.helper = self.helper_cls(
subject_identifier=self.subject_identifier,
now=arrow.Arrow.fromdatetime(datetime(2017, 1, 7),
tzinfo="UTC").datetime,
)
def setUp(self):
site_visit_schedules._registry = {}
site_visit_schedules.register(visit_schedule)
subject_consent = baker.make_recipe(
"adverse_event_app.subjectconsent", subject_identifier="1234567"
)
self.subject_identifier = subject_consent.subject_identifier
# put subject on schedule
_, schedule = site_visit_schedules.get_by_onschedule_model(
"adverse_event_app.onschedule"
)
schedule.put_on_schedule(
subject_identifier=subject_consent.subject_identifier,
onschedule_datetime=subject_consent.consent_datetime,
)
def setUp(self):
site_visit_schedules._registry = {}
site_visit_schedules.register(visit_schedule=visit_schedule1)
RegisteredSubject.objects.create(subject_identifier="12345")
self.appointment = Appointment.objects.create(
visit_code="1000",
appt_datetime=get_utcnow(),
visit_schedule_name="visit_schedule1",
schedule_name="schedule1",
)
self.subject_visit = SubjectVisit.objects.create(
appointment=self.appointment, subject_identifier="12345")
self.bad_subject_visit = BadSubjectVisit.objects.create(
appointment=self.appointment, subject_identifier="12345")
self.test_model = TestModel.objects.create(
subject_visit=self.subject_visit)
def setUp(self):
site_visit_schedules._registry = {}
site_visit_schedules.register(visit_schedule)
self.user = User.objects.create(username="******",
is_staff=True,
is_active=True)
self.subject_identifier = "1234"
for permission in Permission.objects.filter(
content_type__app_label="edc_form_label",
content_type__model="mymodel"):
self.user.user_permissions.add(permission)
RegisteredSubject.objects.create(
subject_identifier=self.subject_identifier)
self.appointment_one = Appointment.objects.create(
subject_identifier=self.subject_identifier,
appt_datetime=get_utcnow() - timedelta(days=1),
visit_code=VISIT_ONE,
visit_code_sequence=0,
visit_schedule_name="visit_schedule",
schedule_name="schedule",
timepoint=0,
timepoint_datetime=get_utcnow() - timedelta(days=1),
)
self.subject_visit_one = SubjectVisit.objects.create(
appointment=self.appointment_one)
self.appointment_two = Appointment.objects.create(
subject_identifier=self.subject_identifier,
appt_datetime=get_utcnow(),
visit_code=VISIT_TWO,
visit_code_sequence=0,
visit_schedule_name="visit_schedule",
schedule_name="schedule",
timepoint=1,
timepoint_datetime=get_utcnow(),
)
self.subject_visit_two = SubjectVisit.objects.create(
appointment=self.appointment_two)
for field in MyModel._meta.fields:
if field.name == "circumcised":
self.default_label = field.verbose_name
break
def setUp(self):
self.subject_identifier = "12345"
site_consents.registry = {}
site_consents.register(v1_consent)
self.helper = self.helper_cls(
subject_identifier=self.subject_identifier,
subject_consent_model_cls=SubjectConsent,
onschedule_model_name="visit_schedule_app.onschedule",
)
site_visit_schedules._registry = {}
site_visit_schedules.register(visit_schedule=visit_schedule)
site_reference_configs.register_from_visit_schedule(visit_models={
"edc_appointment.appointment":
"visit_schedule_app.subjectvisit"
})
self.helper.consent_and_put_on_schedule()
appointment = Appointment.objects.all()[0]
self.subject_visit = SubjectVisit.objects.create(
appointment=appointment,
report_datetime=get_utcnow(),
reason=SCHEDULED)
from edc_visit_schedule import VisitSchedule, site_visit_schedules
from .schedule import schedule
from .schedule_w10 import schedule_w10
app_label = 'ambition_subject'
visit_schedule = VisitSchedule(
name='visit_schedule',
verbose_name='Ambition',
offstudy_model=f'ambition_prn.studyterminationconclusion',
death_report_model=f'ambition_prn.deathreport',
locator_model='edc_locator.subjectlocator',
previous_visit_schedule=None)
visit_schedule.add_schedule(schedule)
visit_schedule_w10 = VisitSchedule(
name='visit_schedule_w10',
verbose_name='Ambition W10',
offstudy_model=f'ambition_prn.studyterminationconclusion',
death_report_model=f'ambition_prn.deathreport',
locator_model='edc_locator.subjectlocator',
previous_visit_schedule=None)
visit_schedule_w10.add_schedule(schedule_w10)
site_visit_schedules.register(visit_schedule)
site_visit_schedules.register(visit_schedule_w10)
from edc_visit_schedule import VisitSchedule, site_visit_schedules
from .schedule import schedule1
visit_schedule1 = VisitSchedule(
name='visit_schedule1',
verbose_name='Trainee',
offstudy_model='trainee_prn.subjectoffstudy',
locator_model='trainee_subject.subject_locator',
death_report_model='trainee_prn.deathreport',
previous_visit_schedule=None)
visit_schedule1.add_schedule(schedule1)
site_visit_schedules.register(visit_schedule1)
cohort_a2_visit_schedule_v1.add_schedule(a_enrollment2_schedule_1)
cohort_a2_visit_schedule_v1.add_schedule(a_antenatal2_schedule_1)
cohort_a2_visit_schedule_v1.add_schedule(a_birth2_schedule_1)
cohort_a2_visit_schedule_v1.add_schedule(a_quarterly2_schedule_1)
cohort_a2_visit_schedule_v1.add_schedule(a_sec2_schedule_1)
cohort_a2_visit_schedule_v1.add_schedule(a_sec_quart2_schedule_1)
cohort_a2_visit_schedule_v1.add_schedule(a_fu2_schedule_1)
cohort_a2_visit_schedule_v1.add_schedule(a_fu_quarterly2_schedule_1)
cohort_a3_visit_schedule_v1 = VisitSchedule(
name='a3_visit_schedule1',
verbose_name='Cohort A3 Visit Schedule',
offstudy_model='flourish_prn.caregiveroffstudy',
death_report_model='flourish_prn.caregiverdeathreport',
locator_model='',
previous_visit_schedule=None)
cohort_a3_visit_schedule_v1.add_schedule(a_enrollment3_schedule_1)
cohort_a3_visit_schedule_v1.add_schedule(a_antenatal3_schedule_1)
cohort_a3_visit_schedule_v1.add_schedule(a_birth3_schedule_1)
cohort_a3_visit_schedule_v1.add_schedule(a_quarterly3_schedule_1)
cohort_a3_visit_schedule_v1.add_schedule(a_sec3_schedule_1)
cohort_a3_visit_schedule_v1.add_schedule(a_sec_quart3_schedule_1)
cohort_a3_visit_schedule_v1.add_schedule(a_fu3_schedule_1)
cohort_a3_visit_schedule_v1.add_schedule(a_fu_quarterly3_schedule_1)
# Registering Visit Schedules
site_visit_schedules.register(cohort_a1_visit_schedule_v1)
site_visit_schedules.register(cohort_a2_visit_schedule_v1)
site_visit_schedules.register(cohort_a3_visit_schedule_v1)
death_report_model='flourish_prn.caregiverdeathreport',
locator_model='',
previous_visit_schedule=None)
cohort_b2_visit_schedule_v1.add_schedule(b_enrollment2_schedule_1)
cohort_b2_visit_schedule_v1.add_schedule(b_quarterly2_schedule_1)
cohort_b2_visit_schedule_v1.add_schedule(b_sec2_schedule_1)
cohort_b2_visit_schedule_v1.add_schedule(b_sec_quart2_schedule_1)
cohort_b2_visit_schedule_v1.add_schedule(b_fu2_schedule_1)
cohort_b2_visit_schedule_v1.add_schedule(b_fu_quarterly2_schedule_1)
cohort_b3_visit_schedule_v1 = VisitSchedule(
name='b3_visit_schedule1',
verbose_name='Cohort B3 Visit Schedule',
offstudy_model='flourish_prn.caregiveroffstudy',
death_report_model='flourish_prn.caregiverdeathreport',
locator_model='',
previous_visit_schedule=None)
cohort_b3_visit_schedule_v1.add_schedule(b_enrollment3_schedule_1)
cohort_b3_visit_schedule_v1.add_schedule(b_quarterly3_schedule_1)
cohort_b3_visit_schedule_v1.add_schedule(b_sec3_schedule_1)
cohort_b3_visit_schedule_v1.add_schedule(b_sec_quart3_schedule_1)
cohort_b3_visit_schedule_v1.add_schedule(b_fu3_schedule_1)
cohort_b3_visit_schedule_v1.add_schedule(b_fu_quarterly3_schedule_1)
# Registering Visit Schedules
site_visit_schedules.register(cohort_b1_visit_schedule_v1)
site_visit_schedules.register(cohort_b2_visit_schedule_v1)
site_visit_schedules.register(cohort_b3_visit_schedule_v1)
def setUp(self):
Appointment.objects.all().delete()
self.subject_identifier = "12345"
self.visit_schedule = VisitSchedule(
name="visit_schedule",
verbose_name="Visit Schedule",
offstudy_model="edc_offstudy.subjectoffstudy",
death_report_model="edc_appointment.deathreport",
)
self.schedule = Schedule(
name="schedule",
onschedule_model="edc_appointment.onschedule",
offschedule_model="edc_appointment.offschedule",
appointment_model="edc_appointment.appointment",
consent_model="edc_appointment.subjectconsent",
)
self.visit1000 = Visit(
code="1000",
timepoint=0,
rbase=relativedelta(days=0),
rlower=relativedelta(days=0),
rupper=relativedelta(days=6),
facility_name="7-day-clinic",
)
self.visit1001 = Visit(
code="1001",
timepoint=1,
rbase=relativedelta(days=14),
rlower=relativedelta(days=1), # one day before base
rupper=relativedelta(days=6),
facility_name="7-day-clinic",
)
self.visit1010 = Visit(
code="1010",
timepoint=2,
rbase=relativedelta(days=28),
rlower=relativedelta(days=6), # one day before base
rupper=relativedelta(days=6),
facility_name="7-day-clinic",
)
self.schedule.add_visit(self.visit1000)
self.schedule.add_visit(self.visit1001)
self.schedule.add_visit(self.visit1010)
self.visit_schedule.add_schedule(self.schedule)
site_visit_schedules._registry = {}
site_visit_schedules.register(visit_schedule=self.visit_schedule)
app_config = django_apps.get_app_config("edc_facility")
class Meta:
label_lower = ""
class DummyAppointmentObj:
subject_identifier = self.subject_identifier
visit_schedule = self.visit_schedule
schedule = self.schedule
facility = app_config.get_facility(name="7-day-clinic")
_meta = Meta()
self.model_obj = DummyAppointmentObj()
def setUp(self):
self.subject_identifier = "12345"
site_visit_schedules._registry = {}
site_visit_schedules.register(visit_schedule=visit_schedule1)
from edc_visit_schedule import VisitSchedule, site_visit_schedules
# from ..models import S
from .schedule import pre_flourish_schedule
pre_flourish_visit_schedule = VisitSchedule(
name='visit_schedule1',
verbose_name='Pre Flourish Visit Schedule',
offstudy_model='pre_flourish.preflourishoffstudy',
locator_model='pre_flourish.preflourishcaregiverlocator',
death_report_model='pre_flourish.preflourishdeathreport',
previous_visit_schedule=None)
pre_flourish_visit_schedule.add_schedule(pre_flourish_schedule)
site_visit_schedules.register(pre_flourish_visit_schedule)
infant_visit_schedule_v1 = VisitSchedule(
name='infant_visit_schedule_v1',
verbose_name='Infant Visit Schedule V1',
offstudy_model='td_prn.infantoffstudy',
death_report_model='td_prn.infantdeathreport',
locator_model='td_maternal.maternallocator',
previous_visit_schedule=None)
infant_visit_schedule_v1.add_schedule(infant_schedule_v1)
infant_visit_schedule_v3 = VisitSchedule(
name='infant_visit_schedule_v3',
verbose_name='Infant Visit Schedule V3',
offstudy_model='td_prn.infantoffstudy',
death_report_model='td_prn.infantdeathreport',
locator_model='td_maternal.maternallocator',
previous_visit_schedule=None)
infant_visit_schedule_v3.add_schedule(infant_schedule_v3)
# Registering Visit Schedules
site_visit_schedules.register(antenatal_visit_schedule_v1)
site_visit_schedules.register(antenatal_visit_schedule_v3)
site_visit_schedules.register(antenatal_membership_visit_schedule_v1)
site_visit_schedules.register(antenatal_membership_visit_schedule_v3)
site_visit_schedules.register(maternal_labour_visit_schedule_v1)
site_visit_schedules.register(maternal_labour_visit_schedule_v3)
site_visit_schedules.register(infant_visit_schedule_v1)
site_visit_schedules.register(infant_visit_schedule_v3)
previous_visit_schedule=None)
cohort_c2_visit_schedule_v1.add_schedule(c_enrollment2_schedule_1)
cohort_c2_visit_schedule_v1.add_schedule(c_quarterly2_schedule_1)
cohort_c2_visit_schedule_v1.add_schedule(c_sec2_schedule_1)
cohort_c2_visit_schedule_v1.add_schedule(c_sec_quart2_schedule_1)
cohort_c2_visit_schedule_v1.add_schedule(caregiver_pool2_schedule_1)
cohort_c2_visit_schedule_v1.add_schedule(c_fu2_schedule_1)
cohort_c2_visit_schedule_v1.add_schedule(c_fu_quarterly2_schedule_1)
cohort_c3_visit_schedule_v1 = VisitSchedule(
name='c3_visit_schedule1',
verbose_name='Cohort C3 Visit Schedule',
offstudy_model='flourish_prn.caregiveroffstudy',
death_report_model='flourish_prn.caregiverdeathreport',
locator_model='',
previous_visit_schedule=None)
cohort_c3_visit_schedule_v1.add_schedule(c_enrollment3_schedule_1)
cohort_c3_visit_schedule_v1.add_schedule(c_quarterly3_schedule_1)
cohort_c3_visit_schedule_v1.add_schedule(c_sec3_schedule_1)
cohort_c3_visit_schedule_v1.add_schedule(c_sec_quart3_schedule_1)
cohort_c3_visit_schedule_v1.add_schedule(caregiver_pool3_schedule_1)
cohort_c3_visit_schedule_v1.add_schedule(c_fu3_schedule_1)
cohort_c3_visit_schedule_v1.add_schedule(c_fu_quarterly3_schedule_1)
# Registering Visit Schedules
site_visit_schedules.register(cohort_c1_visit_schedule_v1)
site_visit_schedules.register(cohort_c2_visit_schedule_v1)
site_visit_schedules.register(cohort_c3_visit_schedule_v1)
locator_model='',
previous_visit_schedule=None)
child_b_visit_schedule_v1.add_schedule(child_b_enrollment_schedule_1)
child_b_visit_schedule_v1.add_schedule(child_b_quarterly_schedule_1)
child_b_visit_schedule_v1.add_schedule(child_b_sec_schedule_1)
child_b_visit_schedule_v1.add_schedule(child_b_sec_qt_schedule_1)
child_b_visit_schedule_v1.add_schedule(child_b_fu_schedule_1)
child_b_visit_schedule_v1.add_schedule(child_b_fu_quarterly_schedule_1)
child_c_visit_schedule_v1 = VisitSchedule(
name='child_c_visit_schedule_v1',
verbose_name='Child Cohort C Visit Schedule',
offstudy_model='flourish_prn.childoffstudy',
death_report_model='flourish_prn.childdeathreport',
locator_model='',
previous_visit_schedule=None)
child_c_visit_schedule_v1.add_schedule(child_c_enrollment_schedule_1)
child_c_visit_schedule_v1.add_schedule(child_c_quarterly_schedule_1)
child_c_visit_schedule_v1.add_schedule(child_c_sec_schedule_1)
child_c_visit_schedule_v1.add_schedule(child_c_sec_qt_schedule_1)
child_c_visit_schedule_v1.add_schedule(child_pool_schedule_1)
child_c_visit_schedule_v1.add_schedule(child_c_fu_schedule_1)
child_c_visit_schedule_v1.add_schedule(child_c_fu_quarterly_schedule_1)
# Registering Visit Schedules
site_visit_schedules.register(child_a_visit_schedule_v1)
site_visit_schedules.register(child_b_visit_schedule_v1)
site_visit_schedules.register(child_c_visit_schedule_v1)
