def test_get_column_stats(): stats = assembly.get_stats_from_contigs(fasta_file) data = stats['GC'] stats = assembly.get_column_stats(data) assert floor(stats['mean']) == 39 assert floor(stats['median']) == 37
def test_get_column_stats(): stats = assembly.get_stats_from_contigs(fasta_file) data = stats['GC'] stats = assembly.get_column_stats(data) assert floor(stats['mean'])==39 assert floor(stats['median'])==37
def test_get_stats_from_contigs(): stats = assembly.get_stats_from_contigs(fasta_file) # its a data frame assert isinstance(stats, pandas.core.frame.DataFrame) # 100 x 2 assert stats.shape == (100, 2) # test a couple arbitrary values assert stats.loc['000005_1741_3371', 'GC'] == 32.8125 assert stats.loc['000483_1123_3166', 'length'] == 269
def test_get_stats_from_contigs(): stats = assembly.get_stats_from_contigs(fasta_file) # its a data frame assert isinstance(stats, pandas.core.frame.DataFrame) # 100 x 2 assert stats.shape == (100,2) # test a couple arbitrary values assert stats.loc['000005_1741_3371','GC'] == 32.8125 assert stats.loc['000483_1123_3166','length'] == 269