from element_lab.lab import Source, Lab, Protocol, User, Location, Project
from element_animal.subject import Subject
from element_session.session import Session
from .paths import (get_imaging_root_data_dir, get_scan_image_files,
get_scan_box_files)
if 'custom' not in dj.config:
dj.config['custom'] = {}
db_prefix = dj.config['custom'].get('database.prefix', '')
# ------------- Activate "lab", "subject", "session" schema -------------
lab.activate(db_prefix + 'lab')
subject.activate(db_prefix + 'subject', linking_module=__name__)
session.activate(db_prefix + 'session', linking_module=__name__)
# ------------- Declare table Equipment for use in element_calcium_imaging -------------
@lab.schema
class Equipment(dj.Manual):
definition = """
scanner: varchar(32)
"""
"Lab",
"Protocol",
"User",
"Project",
"ProjectKeywords",
"ProjectPublication",
"ProjectSourceCode",
"ProjectUser",
"Session",
"SessionDirectory",
"SessionExperimenter",
"SessionNote",
"ProjectSession",
]
# Activate "lab", "subject", "session", "genotyping" schemas -------------
lab.activate(db_prefix + "lab")
subject.activate(db_prefix + "subject", linking_module=__name__)
from element_animal.export.nwb import subject_to_nwb
from element_lab.export.nwb import element_lab_to_nwb_dict
Experimenter = lab.User
session.activate(db_prefix + "session", linking_module=__name__)
genotyping.activate(
db_prefix + "genotyping", db_prefix + "subject", linking_module=__name__
)