コード例 #1
0
 def test_get_policy_no_statement(self):
     '''
     Test UploadCredentials _get_policy if statements are bad
     '''
     upload_creds = UploadCredentials(self._test_bucket, self._test_key,
                                      self._test_name)
     for item in [
         {
             'NotStatement': ['a']
         },
         {
             'Statement': {}
         },
         {
             'Statement': []
         },
         {
             'Statement': None
         },
         {
             'Statement': 'a'
         },
     ]:
         upload_creds._external_policy = item
         self.assertDictEqual(
             upload_creds._get_base_policy(),
             upload_creds._get_policy(),
         )
コード例 #2
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 def test_check_external_policy_one(self):
     '''
     Test UploadCredentials _check_external_policy one statement in file
     '''
     from os import remove
     expected_bucket_names = ['test-bucket-one']
     upload_creds = UploadCredentials(
         self._test_bucket,
         self._test_key,
         self._test_name,
         self._test_profile_name,
     )
     for s3_transfer_allow, s3_transfer_buckets in [
         (True, CREDS_DATA_PATH + '/' + 'external_bucket_list_one'),
     ]:
         upload_creds._check_external_policy(
             s3_transfer_allow=s3_transfer_allow,
             s3_transfer_buckets=s3_transfer_buckets)
         remove(s3_transfer_buckets + '.json')
         expected_resources = {
             's3:GetObject':
             ['arn:aws:s3:::%s/*' % item for item in expected_bucket_names],
             's3:GetObjectAcl':
             ['arn:aws:s3:::%s/*' % item for item in expected_bucket_names],
         }
         result_statements = upload_creds._external_policy['Statement']
         self.assertEqual(len(result_statements),
                          len(EXTERNAL_BUCKET_STATEMENTS))
         for result_statement in result_statements:
             resources = result_statement['Resource']
             self.assertTrue(isinstance(resources, list))
             self.assertEqual(len(resources), 1)
             self.assertListEqual(
                 expected_resources[result_statement['Action']],
                 result_statement['Resource'])
コード例 #3
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ファイル: file.py プロジェクト: T2DREAM/dga-portal
    def create(cls, registry, uuid, properties, sheets=None):
        if properties.get('status') == 'uploading':
            sheets = {} if sheets is None else sheets.copy()

            bucket = registry.settings['file_upload_bucket']
            mapping = cls.schema['file_format_file_extension']
            file_extension = mapping[properties['file_format']]
            date = properties['date_created'].split('T')[0].replace('-', '/')
            accession_or_external = properties.get(
                'accession') or properties['external_accession']
            key = '{date}/{uuid}/{accession_or_external}{file_extension}'.format(
                accession_or_external=accession_or_external,
                date=date,
                file_extension=file_extension,
                uuid=uuid,
                **properties)
            name = 'up{time:.6f}-{accession_or_external}'.format(
                accession_or_external=accession_or_external,
                time=time.time(),
                **properties)[:32]  # max 32 chars

            profile_name = registry.settings.get('file_upload_profile_name')
            upload_creds = UploadCredentials(bucket,
                                             key,
                                             name,
                                             profile_name=profile_name)
            s3_transfer_allow = registry.settings.get(
                'external_aws_s3_transfer_allow', 'false')
            sheets['external'] = upload_creds.external_creds(
                s3_transfer_allow=asbool(s3_transfer_allow),
                s3_transfer_buckets=registry.settings.get(
                    'external_aws_s3_transfer_buckets'),
            )
        return super(File, cls).create(registry, uuid, properties, sheets)
コード例 #4
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ファイル: file.py プロジェクト: mmmika/encoded
def post_upload(context, request):
    properties = context.upgrade_properties()
    if properties['status'] not in ('uploading', 'upload failed'):
        raise HTTPForbidden('status must be "uploading" to issue new credentials')

    accession_or_external = properties.get('accession') or properties['external_accession']
    file_upload_bucket = request.registry.settings['file_upload_bucket']
    external = context.propsheets.get('external', None)
    registry = request.registry
    if external is None:
        # Handle objects initially posted as another state.
        bucket = file_upload_bucket
        uuid = context.uuid
        mapping = context.schema['file_format_file_extension']
        file_extension = mapping[properties['file_format']]
        date = properties['date_created'].split('T')[0].replace('-', '/')
        key = '{date}/{uuid}/{accession_or_external}{file_extension}'.format(
            accession_or_external=accession_or_external,
            date=date, file_extension=file_extension, uuid=uuid, **properties)
    elif external.get('service') == 's3':
        bucket = external['bucket']
        # Must reset file to point to file_upload_bucket (keep AWS public dataset in sync).
        if bucket != file_upload_bucket:
            registry.notify(BeforeModified(context, request))
            context._set_external_sheet({'bucket': file_upload_bucket})
            registry.notify(AfterModified(context, request))
            bucket = file_upload_bucket
        key = external['key']
    else:
        raise HTTPNotFound(
            detail='External service {} not expected'.format(external.get('service'))
        )

    name = 'up{time:.6f}-{accession_or_external}'.format(
        accession_or_external=accession_or_external,
        time=time.time(), **properties)[:32]  # max 32 chars
    profile_name = request.registry.settings.get('file_upload_profile_name')
    upload_creds = UploadCredentials(bucket, key, name, profile_name=profile_name)
    s3_transfer_allow = request.registry.settings.get('external_aws_s3_transfer_allow', 'false')
    creds = upload_creds.external_creds(
        s3_transfer_allow=asbool(s3_transfer_allow),
        s3_transfer_buckets=request.registry.settings.get('external_aws_s3_transfer_buckets'),
    )
    new_properties = None
    if properties['status'] == 'upload failed':
        new_properties = properties.copy()
        new_properties['status'] = 'uploading'

    registry.notify(BeforeModified(context, request))
    context.update(new_properties, {'external': creds})
    registry.notify(AfterModified(context, request))

    rendered = request.embed('/%s/@@object' % context.uuid, as_user=True)
    result = {
        'status': 'success',
        '@type': ['result'],
        '@graph': [rendered],
    }
    return result
コード例 #5
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 def test_get_policy_no_external(self):
     '''
     Test UploadCredentials _get_policy if no external statements
     '''
     upload_creds = UploadCredentials(
         self._test_bucket,
         self._test_key,
         self._test_name,
         self._test_profile_name,
     )
     self.assertDictEqual(upload_creds._get_base_policy(),
                          upload_creds._get_policy())
コード例 #6
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    def test_get_token_default(self):
        '''
        Test UploadCredentials _get_token with good profile_name

        -Test how this works on travis
        '''
        upload_creds = UploadCredentials(
            self._test_bucket,
            self._test_key,
            self._test_name,
        )
        policy = upload_creds._get_policy()
        token = upload_creds._get_token(policy)
        self.assertTrue(isinstance(token, dict))
コード例 #7
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 def test_get_policy_no_external(self):
     '''
     Test UploadCredentials _get_policy if no external statements
     '''
     upload_creds = UploadCredentials(
         self._test_bucket,
         self._test_key,
         self._test_name,
         self._test_profile_name,
     )
     self.assertDictEqual(
         upload_creds._get_base_policy(),
         upload_creds._get_policy()
     )
コード例 #8
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    def test_get_token_default(self):
        '''
        Test UploadCredentials _get_token with good profile_name

        -Test how this works on travis
        '''
        upload_creds = UploadCredentials(
            self._test_bucket,
            self._test_key,
            self._test_name,
        )
        policy = upload_creds._get_policy()
        token = upload_creds._get_token(policy)
        self.assertTrue(isinstance(token, dict))
コード例 #9
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def test_external_creds():
    '''
    Original test from file.py for test_external_creds
    '''
    upload_creds = UploadCredentials(
        'mock_bucket',
        'mock_object',
        'mock_name',
    )
    creds = upload_creds.external_creds()
    assert 'upload_credentials' in creds
    assert creds['bucket'] == 'mock_bucket'
    assert creds['key'] == 'mock_object'
    assert 'mock_name' in creds['upload_credentials']['federated_user_id']
    assert creds['service'] == 's3'
コード例 #10
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def test_external_creds():
    '''
    Original test from file.py for test_external_creds
    '''
    upload_creds = UploadCredentials(
        'mock_bucket',
        'mock_object',
        'mock_name',
    )
    creds = upload_creds.external_creds()
    assert 'upload_credentials' in creds
    assert creds['bucket'] == 'mock_bucket'
    assert creds['key'] == 'mock_object'
    assert 'mock_name' in creds['upload_credentials']['federated_user_id']
    assert creds['service'] == 's3'
コード例 #11
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 def setUpClass(cls):
     cls.mock_sts = mock_sts()
     cls.mock_sts.start()
     cls._upload_creds_attrs = [
         '_bucket',
         '_key',
         '_name',
         '_profile_name',
         '_resource_string',
         '_upload_url',
         '_external_policy',
     ]
     cls._external_creds_keys = [
         'service', 'bucket', 'key', 'upload_credentials'
     ]
     cls._credentials_keys = [
         'session_token',
         'access_key',
         'expiration',
         'secret_key',
         'upload_url',
         'federated_user_arn',
         'federated_user_id',
         'request_id',
     ]
     cls._test_bucket = 'mock_bucket'
     cls._test_key = 'mock_key'
     cls._test_name = 'mock_name'
     cls._test_profile_name = 'mock_profile_name'
     cls._default_upload_creds = UploadCredentials(
         cls._test_bucket,
         cls._test_key,
         cls._test_name,
         cls._test_profile_name,
     )
コード例 #12
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 def test_external_creds_values(self):
     '''
     Test UploadCredentials external_creds returns correct values
     '''
     upload_creds = UploadCredentials(
         self._test_bucket,
         self._test_key,
         self._test_name,
     )
     creds_dict = upload_creds.external_creds()
     self.assertEqual(creds_dict['service'], 's3')
     self.assertEqual(creds_dict['bucket'], self._test_bucket)
     self.assertEqual(creds_dict['key'], self._test_key)
     upload_credentials = creds_dict['upload_credentials']
     self.assertEqual(upload_credentials['upload_url'],
                      upload_creds._upload_url)
コード例 #13
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 def test_external_creds_keys(self):
     '''
     Test UploadCredentials external_creds returns correct keys
     '''
     upload_creds = UploadCredentials(
         self._test_bucket,
         self._test_key,
         self._test_name,
     )
     creds_dict = upload_creds.external_creds()
     self.assertListEqual(sorted(self._external_creds_keys),
                          sorted(list(creds_dict.keys())))
     upload_credentials = creds_dict['upload_credentials']
     self.assertTrue(isinstance(upload_credentials, dict))
     self.assertListEqual(sorted(self._credentials_keys),
                          sorted(list(upload_credentials.keys())))
コード例 #14
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 def test_init_profile_name_none(self):
     '''
     Test UploadCredentials profile_name defaults to None
     '''
     upload_creds = UploadCredentials(self._test_bucket, self._test_key,
                                      self._test_name)
     self.assertIsNone(upload_creds._profile_name)
コード例 #15
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 def test_init_external_policy_empty(self):
     '''
     Test UploadCredentials profile_name defaults to empty dict
     '''
     upload_creds = UploadCredentials(self._test_bucket, self._test_key,
                                      self._test_name)
     self.assertTrue(isinstance(upload_creds._external_policy, dict))
     self.assertFalse(upload_creds._external_policy)
コード例 #16
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 def test_get_policy_ext_statements(self):
     '''
     Test UploadCredentials _get_policy if 1 or more good statements
     '''
     upload_creds = UploadCredentials(self._test_bucket, self._test_key, self._test_name)
     for policy in [
             {'Statement': ['a']},
             {'Statement': ['a', 'b', 'c']},
     ]:
         upload_creds._external_policy = policy
         base = upload_creds._get_base_policy()
         for statement in policy['Statement']:
             base['Statement'].append(statement)
         self.assertDictEqual(
             base,
             upload_creds._get_policy(),
         )
コード例 #17
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 def test_get_policy_no_statement(self):
     '''
     Test UploadCredentials _get_policy if statements are bad
     '''
     upload_creds = UploadCredentials(self._test_bucket, self._test_key, self._test_name)
     for item in [
             {'NotStatement': ['a']},
             {'Statement': {}},
             {'Statement': []},
             {'Statement': None},
             {'Statement': 'a'},
     ]:
         upload_creds._external_policy = item
         self.assertDictEqual(
             upload_creds._get_base_policy(),
             upload_creds._get_policy(),
         )
コード例 #18
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 def test_external_creds_values(self):
     '''
     Test UploadCredentials external_creds returns correct values
     '''
     upload_creds = UploadCredentials(
         self._test_bucket,
         self._test_key,
         self._test_name,
     )
     creds_dict = upload_creds.external_creds()
     self.assertEqual(creds_dict['service'], 's3')
     self.assertEqual(creds_dict['bucket'], self._test_bucket)
     self.assertEqual(creds_dict['key'], self._test_key)
     upload_credentials = creds_dict['upload_credentials']
     self.assertEqual(
         upload_credentials['upload_url'],
         upload_creds._upload_url
     )
コード例 #19
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 def test_check_external_policy_many(self):
     '''
     Test UploadCredentials _check_external_policy many statements in file
     '''
     import os
     expected_bucket_names = [
         'test-bucket-one',
         'test-bucket-two',
         'test-bucket-three',
     ]
     upload_creds = UploadCredentials(
         self._test_bucket,
         self._test_key,
         self._test_name,
         self._test_profile_name,
     )
     for s3_transfer_allow, s3_transfer_buckets in [
             (True, CREDS_DATA_PATH + '/' + 'external_bucket_list_many'),
     ]:
         upload_creds._check_external_policy(
             s3_transfer_allow=s3_transfer_allow,
             s3_transfer_buckets=s3_transfer_buckets
         )
         os.remove(s3_transfer_buckets + '.json')
         expected_resources = {
             's3:GetObject': [
                 'arn:aws:s3:::%s/*' % item for item in expected_bucket_names
             ],
             's3:GetObjectAcl': [
                 'arn:aws:s3:::%s/*' % item for item in expected_bucket_names
             ],
         }
         result_statements = upload_creds._external_policy['Statement']
         self.assertEqual(len(result_statements), len(EXTERNAL_BUCKET_STATEMENTS))
         for result_statement in result_statements:
             resources = result_statement['Resource']
             self.assertTrue(isinstance(resources, list))
             self.assertEqual(len(resources), 3)
             self.assertListEqual(
                 expected_resources[result_statement['Action']],
                 result_statement['Resource']
             )
コード例 #20
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 def test_external_creds_keys(self):
     '''
     Test UploadCredentials external_creds returns correct keys
     '''
     upload_creds = UploadCredentials(
         self._test_bucket,
         self._test_key,
         self._test_name,
     )
     creds_dict = upload_creds.external_creds()
     self.assertListEqual(
         sorted(self._external_creds_keys),
         sorted(list(creds_dict.keys()))
     )
     upload_credentials = creds_dict['upload_credentials']
     self.assertTrue(isinstance(upload_credentials, dict))
     self.assertListEqual(
         sorted(self._credentials_keys),
         sorted(list(upload_credentials.keys()))
     )
コード例 #21
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 def test_check_external_policy_zero(self):
     '''
     Test UploadCredentials _check_external_policy no statements in file
     '''
     upload_creds = UploadCredentials(
         self._test_bucket,
         self._test_key,
         self._test_name,
         self._test_profile_name,
     )
     for s3_transfer_allow, s3_transfer_buckets in [
         (False, None),
         (True, None),
         (False, 'some-path'),
         (True, 'bad-path'),
         (True, CREDS_DATA_PATH + '/' + 'external_bucket_list_empty'),
     ]:
         upload_creds._check_external_policy(
             s3_transfer_allow=s3_transfer_allow,
             s3_transfer_buckets=s3_transfer_buckets)
         self.assertDictEqual(upload_creds._external_policy, {})
コード例 #22
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 def test_get_policy_ext_statements(self):
     '''
     Test UploadCredentials _get_policy if 1 or more good statements
     '''
     upload_creds = UploadCredentials(self._test_bucket, self._test_key,
                                      self._test_name)
     for policy in [
         {
             'Statement': ['a']
         },
         {
             'Statement': ['a', 'b', 'c']
         },
     ]:
         upload_creds._external_policy = policy
         base = upload_creds._get_base_policy()
         for statement in policy['Statement']:
             base['Statement'].append(statement)
         self.assertDictEqual(
             base,
             upload_creds._get_policy(),
         )
コード例 #23
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 def test_check_external_policy_zero(self):
     '''
     Test UploadCredentials _check_external_policy no statements in file
     '''
     upload_creds = UploadCredentials(
         self._test_bucket,
         self._test_key,
         self._test_name,
         self._test_profile_name,
     )
     for s3_transfer_allow, s3_transfer_buckets in [
             (False, None),
             (True, None),
             (False, 'some-path'),
             (True, 'bad-path'),
             (True, CREDS_DATA_PATH + '/' + 'external_bucket_list_empty'),
     ]:
         upload_creds._check_external_policy(
             s3_transfer_allow=s3_transfer_allow,
             s3_transfer_buckets=s3_transfer_buckets
         )
         self.assertDictEqual(upload_creds._external_policy, {})