def polygon_annotation(tmpdir, psfile, extent, j_opt, ok_opt, annotate):
"""Polygon annotation.
tmpdir a temporary scratch directory
psfile output postscript file
extent extent of the map
j_opt GMT -J option string (unused!)
ok_opt GMT -O and -K option string
annotate the annotation data:
('polygon', ((lon,lat),(lon',lat'),...), <kwargs>)
By default the polygon will be closed.
The optional <kwargs> will be a dictionary of extra parameters,
such as line width, fill colour, etc. The dictionary will be optional.
"""
# set default polygon attributes
linewidth = 1.0
linecolour = '0/0/0'
fillcolour = None
l_opt = '-L'
# unpack the annotate command object
try:
(_, points, kwargs) = annotate
except ValueError:
(_, points) = annotate
kwargs = {}
# set polygon attributes from kwargs
linewidth = kwargs.get('linewidth', linewidth)
linecolour = kwargs.get('linecolour', linecolour)
fillcolour = kwargs.get('fillcolour', fillcolour)
if kwargs.get('noclose', False):
l_opt = ''
# unpack extent, get -R option
(ll_lat, ll_lon, ur_lat, ur_lon) = extent
r_opt = '-R%f/%f/%f/%f' % (ll_lon, ur_lon, ll_lat, ur_lat)
# file we fill with annotation text
txt_file = os.path.join(tmpdir, 'polygon.txt')
# write polygon data to the text file
fd = open(txt_file, 'w')
for (lon, lat) in points:
fd.write('%f %f\n' % (lon, lat))
fd.close()
# do GMT command
w_opt = '-W%.2f,%s' % (linewidth, linecolour)
g_opt = ''
if fillcolour:
g_opt = '-G%s' % fillcolour
cmd = ('psxy %s %s %s %s %s %s %s >> %s'
% (txt_file, j_opt, r_opt, ok_opt, l_opt, w_opt, g_opt, psfile))
util.do_cmd(cmd)
def polygon_annotation(tmpdir, psfile, extent, j_opt, ok_opt, annotate):
"""Polygon annotation.
tmpdir a temporary scratch directory
psfile output postscript file
extent extent of the map
j_opt GMT -J option string (unused!)
ok_opt GMT -O and -K option string
annotate the annotation data:
('polygon', ((lon,lat),(lon',lat'),...), <kwargs>)
By default the polygon will be closed.
The optional <kwargs> will be a dictionary of extra parameters,
such as line width, fill colour, etc. The dictionary will be optional.
"""
# set default polygon attributes
linewidth = 1.0
linecolour = '0/0/0'
fillcolour = None
l_opt = '-L'
# unpack the annotate command object
try:
(_, points, kwargs) = annotate
except ValueError:
(_, points) = annotate
kwargs = {}
# set polygon attributes from kwargs
linewidth = kwargs.get('linewidth', linewidth)
linecolour = kwargs.get('linecolour', linecolour)
fillcolour = kwargs.get('fillcolour', fillcolour)
if kwargs.get('noclose', False):
l_opt = ''
# unpack extent, get -R option
(ll_lat, ll_lon, ur_lat, ur_lon) = extent
r_opt = '-R%f/%f/%f/%f' % (ll_lon, ur_lon, ll_lat, ur_lat)
# file we fill with annotation text
txt_file = os.path.join(tmpdir, 'polygon.txt')
# write polygon data to the text file
fd = open(txt_file, 'w')
for (lon, lat) in points:
fd.write('%f %f\n' % (lon, lat))
fd.close()
# do GMT command
w_opt = '-W%.2f,%s' % (linewidth, linecolour)
g_opt = ''
if fillcolour:
g_opt = '-G%s' % fillcolour
cmd = ('psxy %s %s %s %s %s %s %s >> %s' %
(txt_file, j_opt, r_opt, ok_opt, l_opt, w_opt, g_opt, psfile))
util.do_cmd(cmd)
def generated_annotation(tmpdir, psfile, extent, mapsize, jok_opt):
"""
Place 'generated at ...' annotation on a GMT graph.
tmpdir is the path to a temporary scratch directory
psfile path to the POSTSCRIPT file to write to
extent the map extent ()
mapsize notional mapsize (cm)
jok_opt the GMT -J, -O and -K options string
"""
# file we fill with annotation text
txt_file = os.path.join(tmpdir, 'data.txt')
# get string we are going to use
ann_str = time.strftime('@:4:Generated at %H:%M:%S on %d %b %Y')
# figure out where we are going to put the annotation
# -1.0c from origin, -1.0c down
(ll_lat, ll_lon, ur_lat, ur_lon) = extent
vert_deg = (ur_lat - ll_lat)
offset_lon = ll_lon - (vert_deg / mapsize) * 2.0
offset_lat = ll_lat - (vert_deg / mapsize) * 2.0
r_opt = '-R%f/%f/%f/%f' % (ll_lon, ur_lon, ll_lat, ur_lat)
# create the annotation text file
ann_hdr = '%f %f 6 0 0 bl ' % (offset_lon, offset_lat)
fd = open(txt_file, 'w')
fd.write(ann_hdr)
fd.write(ann_str)
fd.close()
# annotate the plot
cmd = 'pstext %s %s %s -N >> %s' % (txt_file, r_opt, jok_opt, psfile)
util.do_cmd(cmd)
def generated_annotation(tmpdir, psfile, extent, mapsize, jok_opt):
"""
Place 'generated at ...' annotation on a GMT graph.
tmpdir is the path to a temporary scratch directory
psfile path to the POSTSCRIPT file to write to
extent the map extent ()
mapsize notional mapsize (cm)
jok_opt the GMT -J, -O and -K options string
"""
# file we fill with annotation text
txt_file = os.path.join(tmpdir, 'data.txt')
# get string we are going to use
ann_str = time.strftime('@:4:Generated at %H:%M:%S on %d %b %Y')
# figure out where we are going to put the annotation
# -1.0c from origin, -1.0c down
(ll_lat, ll_lon, ur_lat, ur_lon) = extent
vert_deg = (ur_lat - ll_lat)
offset_lon = ll_lon - (vert_deg/mapsize)*2.0
offset_lat = ll_lat - (vert_deg/mapsize)*2.0
r_opt = '-R%f/%f/%f/%f' % (ll_lon, ur_lon, ll_lat, ur_lat)
# create the annotation text file
ann_hdr = '%f %f 6 0 0 bl ' % (offset_lon, offset_lat)
fd = open(txt_file, 'w')
fd.write(ann_hdr)
fd.write(ann_str)
fd.close()
# annotate the plot
cmd = 'pstext %s %s %s -N >> %s' % (txt_file, r_opt, jok_opt, psfile)
util.do_cmd(cmd)
def plot_gmt_xyz_contour(data, output_file, title=None,
np_posn=None, s_posn=None,
cb_label=None, cb_steps=None,
colourmap=None, annotate=[], linewidth=1.0,
show_graph=False, map_extent=None,
annot_lat = '30m', grid_lat = '30m',
annot_lon = '30m', grid_lon = '30m'):
"""A function to take XYZ data and plot contours onto a GMT map.
data an iterable of values in xyz format (lon, lat, val)
output_file path to file that should be generated (*.png, *.eps, etc)
title string used to title the plot
np_posn code string for north pointer placement, one of:
'C' - centre of plot
'NE' - inside plot, northeast corner
'CE' - inside plot, centre of east edge
'NNE' - outside plot, north of NE corner
'ENE' - outside plot, east of NE corner
etc (see the documentation for 'placement')
s_posn code string for scale placement
see examples for 'np_posn' above
cb_label string containing the label text for the colorbar
(if not supplied, no colourbar)
cb_steps if supplied is a sequence of discrete values at
the colour changes
colourmap string containing name of required colormap
this could be a GMT name or a local name
annotate list of user annotations:
if None, no user or system annotations
if [], only system annotations
else system and user annotations
linewidth width of countour lines in pixels
show_graph if True try to display final image in system-independant way
map_extent set the extent of the displayed map if supplied
(get extent from data if not supplied)
annot_lat Spacing in minutes for latitude annotations (e.g. 30m = 0.5 degress)
grid_lat Spacing in minutes for latitude grid lines (e.g. 30m = 0.5 degress)
annot_lon Spacing in minutes for longitude annotations (e.g. 30m = 0.5 degress)
grid_lon Spacing in minutes for longitude grid lines (e.g. 30m = 0.5 degress)
"""
# create a scratch directory for ephemeral files
tmp_dir = tempfile.mkdtemp(prefix='plot_gmt_xyz_contour_')
# set up the GMT default values
util.set_gmt_defaults(tmp_dir)
# handle optional parameters
if title is None:
title = ''
# if no colourmap supplied, use default
c_map = ColourMap
if colourmap is not None:
c_map = colourmap
if not os.path.exists(c_map):
c_map = util.get_colourmap(c_map)
# get maximum and minimum values
max_val = util.max_nan(data[:,2])
min_val = util.min_nan(data[:,2])
# get extent of data
if map_extent:
extent = map_extent
else:
extent = ugxe.get_extent(data, margin=0)
(ll_lat, ll_lon, ur_lat, ur_lon) = extent
r_opt = '-R%f/%f/%f/%f' % (ll_lon, ur_lon, ll_lat, ur_lat)
# set the -J option for Mercator projection
j_opt = '-JM%fc' % cfg.MapWidthCentimetres
# write a GMT XYZ file (required by GMT)
my_xyz_file = os.path.join(tmp_dir, 'data.xyz')
num.savetxt(my_xyz_file, data)
# generate CPT file
my_cpt_file = os.path.join(tmp_dir, 'data.cpt')
if cb_steps is None:
cb_steps = []
if len(cb_steps) > 0:
util.make_discrete_cpt(my_cpt_file, c_map, cb_steps)
else:
(start, stop, step) = util.get_scale_min_max_step(max_val, min_val)
if os.path.exists(c_map):
cm = c_map
else:
cm = util.get_colourmap(c_map)
util.do_cmd('makecpt -C%s.cpt -T%f/%f/%f > %s'
% (cm, start, stop, step, my_cpt_file))
# think of a postscript filename for plot output
my_ps_file = os.path.join(tmp_dir, 'data.ps')
# linewidth checking - if width < 1.0, no lines
w_opt = '-W%.1f/0' % linewidth
if linewidth < 1.0:
w_opt = '-W+1'
#Apply blockmean to avoid aliasing short wavelengths
my_grd_file = os.path.join(tmp_dir, 'temp.grd')
my_grd_file2 = os.path.join(tmp_dir, 'temp2.grd')
my_grd_file3 = os.path.join(tmp_dir, 'temp3.grd')
my_mask_file = os.path.join(tmp_dir, 'mask.grd')
my_hzd_file = os.path.join(tmp_dir, 'hazard.grd')
print my_grd_file
print my_grd_file2
util.do_cmd('surface %s -G%s %s -I0.001 -T0.5'
% (my_xyz_file, my_grd_file,r_opt))
util.do_cmd('grdimage %s -K -Q -C%s %s %s > %s'
% (my_grd_file, my_cpt_file, r_opt, j_opt,
my_ps_file))
"""
# METHOD 1
util.do_cmd('surface %s -G%s %s -I0.001 -T0.5'
% (my_xyz_file, my_grd_file,r_opt))
util.do_cmd('grdmask %s %s -I0.001 -G%s -NNaN/NaN/1'
% (my_xyz_file,r_opt,my_mask_file))
util.do_cmd('grdmath %s %s MUL = %s'
% (my_mask_file, my_grd_file,my_hzd_file))
util.do_cmd('grdimage %s -K -Q -C%s %s %s > %s'
% (my_hzd_file, my_cpt_file, r_opt, j_opt,
my_ps_file))
"""
"""
# METHOD 2
util.do_cmd('xyz2grd %s %s -I0.001 -G%s'
% (my_xyz_file,r_opt,my_grd_file))
util.do_cmd('grdsample %s %s -I0.005 -G%s'
% (my_grd_file,r_opt,my_grd_file2))
util.do_cmd('grdmask %s %s -I0.005 -G%s -NNaN/NaN/1'
% (my_xyz_file,r_opt,my_mask_file))
util.do_cmd('grdmath %s %s MUL = %s'
% (my_mask_file, my_grd_file2,my_hzd_file))
util.do_cmd('grdimage %s -K -Q -C%s %s %s > %s'
% (my_hzd_file, my_cpt_file, r_opt, j_opt,
my_ps_file))
"""
"""
# METHOD 3
util.do_cmd('xyz2grd %s %s -I0.001 -G%s'
% (my_xyz_file,r_opt,my_grd_file))
util.do_cmd('grdmask %s %s -I0.001 -G%s -NNaN/NaN/1'
% (my_xyz_file,r_opt,my_mask_file))
util.do_cmd('grdmath %s %s MUL = %s'
% (my_mask_file, my_grd_file,my_hzd_file))
util.do_cmd('psxy %s %s %s -W0.5p/100 -G200 -O -K -M >%s'
% (my_xyz_file, r_opt,j_opt,my_ps_file))
util.do_cmd('grdimage %s -K -Q -C%s %s %s > %s'
% (my_hzd_file, my_cpt_file, r_opt, j_opt,
my_ps_file))
"""
"""
# METHOD 4
util.do_cmd('xyz2grd %s %s -I0.001 -G%s'
% (my_xyz_file,r_opt,my_grd_file))
util.do_cmd('grdmask %s %s -I0.001 -G%s -NNaN/NaN/1'
% (my_xyz_file,r_opt,my_mask_file))
util.do_cmd('grdmath %s %s MUL = %s'
% (my_mask_file, my_grd_file,my_hzd_file))
util.do_cmd('psxy %s %s %s -W0.5p/100 -K >%s'
% (my_xyz_file, r_opt,j_opt,my_ps_file))
util.do_cmd('grdimage %s -K -Q -C%s %s -O %s > %s'
% (my_hzd_file, my_cpt_file, r_opt, j_opt,
my_ps_file))
util.do_cmd('psxy %s %s %s -W0.5p/100 -M -O -K >%s'
% (my_xyz_file, r_opt,j_opt,my_ps_file))
"""
# draw the coast
util.do_cmd('pscoast %s -K -O %s -Df -W -S192/216/255 >> %s'
% (r_opt, j_opt, my_ps_file))
# do annotations
if annotate is not None:
ok_opt = '-K -O'
jok_opt = '%s %s' % (ok_opt, j_opt)
uga.generated_annotation(tmp_dir, my_ps_file, extent,
cfg.MapWidthCentimetres, jok_opt)
uga.user_annotation(tmp_dir, my_ps_file, extent, j_opt, ok_opt, annotate)
# draw the colorbar
if cb_label:
x_offset = cfg.MapWidthCentimetres + 0.5
y_offset = cfg.MapHeightCentimetres/2.0 - 1.75
util.do_cmd('psscale -K -O -E -C%s -D%.1fc/%.1fc/9.0c/0.8c "-B:%s:" >> %s'
% (my_cpt_file, x_offset, y_offset, cb_label, my_ps_file))
# draw the rest of the map
t_opt = ''
if np_posn:
t_opt = ugp.get_northpointer_placement(np_posn, extent)
l_opt = ''
if s_posn:
l_opt = ugp.get_scale_placement(s_posn, extent)
util.do_cmd('psbasemap %s -O %s "-Ba%s/a%s:.%s:WSen" -Bg%s/g%s %s %s >> %s'
% (r_opt, j_opt, annot_lon, annot_lat, title, grid_lon, grid_lat, t_opt, l_opt, my_ps_file))
# convert PS to required type
(_, file_extension) = output_file.rsplit('.', 1)
try:
t_opt = util.Extension2TOpt[file_extension.lower()]
except KeyError:
raise RuntimeError("Can't handle plot outputfile type: %s" %
file_extension)
util.do_cmd('ps2raster %s -A -T%s' % (my_ps_file, t_opt))
(my_output_file, _) = my_ps_file.rsplit('.', 1)
my_output_file += '.' + file_extension
shutil.copyfile(my_output_file, output_file)
# if it's required to show the graph ...
# TODO: Experimental - leave?
if show_graph:
import sys
if sys.platform == 'win32':
os.startfile(my_output_file)
else:
import subprocess
try:
subprocess.Popen(['xdg-open', my_output_file])
except OSError:
print("Sorry, the 'xdg-open' application is required to "
"automatically display images.\nYou can see the image "
"in file %s." % output_file)
# remove the temp directory
shutil.rmtree(tmp_dir)
def plot_gmt_map(extent, output_file, title=None, np_posn=None,
s_posn=None, annotate=[], show_graph=False):
"""A function to draw a GMT map, no data, just annotations.
extent the map extent (ll_lat, ll_lon, ur_lat, ur_lon)
output_file path to file that should be generated (*.png, *.eps, etc)
title string used to title the plot
np_posn position tuple or code string for north pointer placement,
one of:
'C' - centre of plot
'NE' - inside plot, northeast corner
'CE' - inside plot, centre of east edge
'NNE' - outside plot, north of NE corner
'ENE' - outside plot, east of NE corner
etc (see the documentation for 'placement')
s_posn code string for scale placement
see examples for 'np_posn' above
annotate list of user annotations:
if None, no user or system annotations
if [], only system annotations
else system and user annotations
show_graph if True try to display final image in system-independant way
Probably useful only for testing.
"""
# unpack the extent
(ll_lat, ll_lon, ur_lat, ur_lon) = extent
r_opt = '-R%f/%f/%f/%f' % (ll_lon, ur_lon, ll_lat, ur_lat)
# create a scratch directory for ephemeral files
tmp_dir = tempfile.mkdtemp(prefix='plot_gmt_map_')
# set up the GMT default values
util.set_gmt_defaults(tmp_dir)
# handle optional parameters
if title is None:
title = ''
# think of a postscript filename
my_ps_file = os.path.join(tmp_dir, 'data.ps')
# draw the coast
util.do_cmd('pscoast %s -K -JM%fc -Df -W -S192/216/255 >> %s'
% (r_opt, cfg.MapWidthCentimetres, my_ps_file))
# draw the rest of the map
t_opt = ''
if np_posn:
t_opt = ugp.get_northpointer_placement(np_posn, extent)
l_opt = ''
if s_posn:
l_opt = ugp.get_scale_placement(s_posn, extent)
# do annotations
if annotate is not None:
j_opt = '-JM%fc' % cfg.MapWidthCentimetres
ok_opt = '-K -O'
jok_opt = '%s %s' % (j_opt, ok_opt)
uga.generated_annotation(tmp_dir, my_ps_file, extent,
cfg.MapWidthCentimetres, jok_opt)
uga.user_annotation(tmp_dir, my_ps_file, extent, j_opt, ok_opt, annotate)
util.do_cmd('psbasemap %s -K -O -JM%fc -Ba30m:".%s":WSen -Bg30m %s %s >> %s'
% (r_opt, cfg.MapWidthCentimetres, title, t_opt, l_opt,
my_ps_file))
cmd = ('psimage austgov-stacked.sun -O -W3.0/2.0 -C144.200/-38.800 '
'-F1.0,255/0/0 >> %s' % my_ps_file)
util.do_cmd(cmd)
# convert PS to required type
(_, file_extension) = output_file.rsplit('.', 1)
try:
t_opt = util.Extension2TOpt[file_extension.lower()]
except KeyError:
raise RuntimeError("Can't handle plot outputfile type: %s" %
file_extension)
util.do_cmd('ps2raster %s -A -T%s' % (my_ps_file, t_opt))
(my_output_file, _) = my_ps_file.rsplit('.', 1)
my_output_file += '.' + file_extension
shutil.copyfile(my_output_file, output_file)
# if it's required to show the graph ...
# TODO: Experimental - leave?
if show_graph:
import sys
if sys.platform == 'win32':
os.startfile(my_output_file)
else:
import subprocess
try:
subprocess.Popen(['xdg-open', my_output_file])
except OSError:
print("Sorry, the 'xdg-open' application is required to "
"automatically display images.\nYou can see the image "
"in file %s." % output_file)
# remove the temp directory
shutil.rmtree(tmp_dir)
def text_annotation(tmpdir, psfile, extent, j_opt, ok_opt, annotate):
"""
Place user text annotation on a GMT graph.
tmpdir is the path to a temporary scratch directory
psfile path to the POSTSCRIPT file to write to
extent extent of the map
j_opt the GMT J option string
ok_opt the GMT O and K option string
annotate user annotations
a list of tuples like
(type, (lon, lat), str) or
(type, (lon, lat), str, dict)
where lon, lat are lon/lat coordinate values
str is the text string to write
dict is a set of args controlling
the text write
The 'dict' annotate parameter has the form:
{'fontsize': <fontsize float>,
'colour': <colour>,
}
The user annotation string may contain any of the '@' escape sequences
described at:
http://gmt.soest.hawaii.edu/gmt/doc/gmt/html/man/pstext.html#DESCRIPTION
"""
# file we fill with annotation text
txt_file = os.path.join(tmpdir, 'data.txt')
# unpack the annotation sequence
if len(annotate) == 3:
(_, point, annstr) = annotate
anndict = {}
elif len(annotate) == 4:
(_, point, annstr, anndict) = annotate
else: # handle overflow
(_, point, annstr, anndict, _) = annotate
(x, y) = point
# set defaults, if required
fontsize = anndict.get('fontsize', DefaultFontSize)
fontno = anndict.get('fontno', DefaultFontNo)
colour = anndict.get('colour', DefaultColour)
angle = anndict.get('angle', DefaultAngle)
justify = anndict.get('justify', DefaultJustify)
linespace = anndict.get('linespace', DefaultLinespace)
parwidth = anndict.get('parwidth', DefaultParWidth)
parjust = anndict.get('parjust', DefaultParJust)
# unpack extent
(ll_lat, ll_lon, ur_lat, ur_lon) = extent
r_opt = '-R%f/%f/%f/%f' % (ll_lon, ur_lon, ll_lat, ur_lat)
# create the annotation text file
ann_hdr = ('%f %f %s %s %s %s %s' %
(x, y, fontsize, angle, fontno, justify, colour))
fd = open(txt_file, 'w')
fd.write(ann_hdr)
fd.write(annstr)
fd.close()
# annotate the plot
cmd = ('pstext %s %s %s %s -N >> %s' %
(txt_file, r_opt, j_opt, ok_opt, psfile))
util.do_cmd(cmd)
def image_annotation(tmpdir, psfile, extent, j_opt, ok_opt, annotate):
"""Image annotation.
tmpdir a temporary scratch directory
psfile output postscript file
extent extent of the map
j_opt GMT -J option string
ok_opt GMT -O and -K option string
annotate the annotation data:
('image', <posn>, <imagefile>, <kwargs>)
where <posn> is a position specifier
(string or lon,lat tuple)
<imagefile> is the path to the EPS image file
<kwargs> is a dictionary of extra args
(optional)
"""
# set default polygon attributes
framewidth = 1.0
framecolour = '0/0/0'
imagewidth = 4.0
imageheight = 3.0
# unpack the annotate command object
try:
(_, posn, imagefile, kwargs) = annotate
except ValueError:
(_, posn, imagefile) = annotate
kwargs = {}
# if given image height but not width, calculate width assuming
# aspect ratio of default image width and height, etc
if (kwargs.get('imagewidth', None) is None
and kwargs.get('imageheight', None) is not None):
kwargs['imagewidth'] = kwargs['imageheight'] * imagewidth / imageheight
elif (kwargs.get('imageheight', None) is None
and kwargs.get('imagewidth', None) is not None):
kwargs['imageheight'] = kwargs['imagewidth'] * imageheight / imagewidth
# override default polygon attributes from kwargs
framewidth = float(kwargs.get('framewidth', framewidth))
framecolour = kwargs.get('framecolour', framecolour)
imagewidth = float(kwargs.get('imagewidth', imagewidth))
imageheight = float(kwargs.get('imageheight', imageheight))
want_frame = not kwargs.get('noframe', False)
# set X and Y margins
margin_x = 1.0
margin_y = 1.0
# unpack the extent and get map size in cm
(ll_lat, ll_lon, ur_lat, ur_lon) = extent
(map_width, map_height) = util.get_coords_cm(ur_lon, ur_lat, extent, j_opt)
# figure out image placement, convert to cm
if isinstance(posn, basestring):
lower_posn = posn.lower()
try:
eval_str = ImagePlacement[lower_posn]
except KeyError:
raise RuntimeError("Placement string '%s' is not recognised" %
posn)
else:
# we have a (lon, lat) tuple
# TODO: implement!
pass
# execute the posn eval_str - gives us x, y and justify
exec(eval_str)
# set -W option - final image size
w_opt = '-W%.2f/%.2f' % (imagewidth, imageheight)
# do -C option as well as the frame, if required
c_opt = '-C%.3f/%.3f/%s' % (x, y, justify)
if want_frame:
f_opt = '-F%.1f,%s' % (framewidth, framecolour)
# now put image into PS file
cmd = ('psimage %s %s %s %s %s >> %s' %
(imagefile, ok_opt, w_opt, c_opt, f_opt, psfile))
util.do_cmd(cmd)
def plot_gmt_xyz(data, output_file, bins=100, title=None, np_posn=None,
s_posn=None, cb_label=None, colourmap=None, cb_steps=None,
annotate=[], show_graph=False, map_extent=None):
"""A function to take gridded XYZ data and plot onto a GMT map.
Use a discrete colourbar.
data an iterable of *gridded* values in xyz format (lon, lat, val)
output_file path to file that should be generated (*.png, *.eps, etc)
bins number of bins in the X direction if a single integer, else
expect 2-tuple of integers (bins_x, bins_y)
title string used to title the plot
np_posn code string for north pointer placement, one of:
'C' - centre of plot
'NE' - inside plot, northeast corner
'CE' - inside plot, centre of east edge
'NNE' - outside plot, north of NE corner
'ENE' - outside plot, east of NE corner
etc (see the documentation for 'placement')
OR
(lon,lat) tuple
s_posn code string for scale placement
see examples for 'np_posn' above
cb_label string containing the label text for the colorbar
(if not supplied, no colourbar)
colourmap string containing name of required colormap
(a local file 'hazmap.cpt' or GMT name 'cool')
cb_steps an iterable of desired discrete steps in the DISCRETE
colourmap, or an empty list (code chooses steps), or None
which gives the default continuous colourmap
annotate list of user annotations:
if None, no user or system annotations
if [], only system annotations
else system and user annotations
show_graph if True try to display final image in system-independant way
map_extent sets the extent of the displayed map if supplied
(get extent from data if not supplied)
"""
# create a scratch directory for ephemeral files
tmp_dir = tempfile.mkdtemp(prefix='plot_map_')
# set up the GMT default values
util.set_gmt_defaults(tmp_dir)
# handle bins parameter
try:
(bins_y, bins_x) = bins
except TypeError:
bins_x = bins_y = bins
# handle optional parameters
if title is None:
title = ''
c_map = DefaultColourMap
if colourmap:
c_map = colourmap
c_map = util.get_colourmap(c_map)
# get extent of data (user-specified, or we get from data)
if map_extent:
extent = map_extent
else:
extent = ugxe.get_extent(data, margin=0)
(ll_lat, ll_lon, ur_lat, ur_lon) = extent
r_opt = '-R%f/%f/%f/%f' % (ll_lon, ur_lon, ll_lat, ur_lat)
# get max NON-NAN value from XYZ data
max_val = util.max_nan(data[:,2])
min_val = util.min_nan(data[:,2])
# write a GMT XYZ file
my_xyz_file = os.path.join(tmp_dir, 'data.xyz')
scipy.savetxt(my_xyz_file, data)
# convert XYZ to GRD file
my_grd_file = os.path.join(tmp_dir, 'data.grd')
util.do_cmd('xyz2grd %s %s -I%d+/%d+ -G%s'
% (my_xyz_file, r_opt, bins_x, bins_y, my_grd_file))
# generate CPT file
my_cpt_file = os.path.join(tmp_dir, 'data.cpt')
if cb_steps is None:
util.do_cmd('grd2cpt %s -C%s -Z > %s'
% (my_grd_file, c_map, my_cpt_file))
elif hasattr(cb_steps, '__iter__'):
if len(cb_steps) == 0: # code chooses steps
(start, stop, step) = util.get_scale_min_max_step(max_val, min_val)
util.do_cmd('makecpt -C%s.cpt -T%f/%f/%f > %s'
% (c_map, start, stop, step, my_cpt_file))
else: # user chooses steps
util.make_discrete_cpt(my_cpt_file, c_map, cb_steps)
else:
msg = "cb_steps param must be None or list: got %s" % type(cb_steps)
raise RuntimeError(msg)
# think of a postscript filename
my_ps_file = os.path.join(tmp_dir, 'data.ps')
# draw GRD data on map
util.do_cmd('grdimage %s -K %s -JM%fc -C%s -Q > %s'
% (my_grd_file, r_opt, cfg.MapWidthCentimetres,
my_cpt_file, my_ps_file))
# draw the coast
util.do_cmd('pscoast %s -K -O -JM%fc -Df -W -S192/216/255 >> %s'
% (r_opt, cfg.MapWidthCentimetres, my_ps_file))
# draw the rest of the map
t_opt = ''
if np_posn:
t_opt = ugp.get_northpointer_placement(np_posn, extent)
l_opt = ''
if s_posn:
l_opt = ugp.get_scale_placement(s_posn, extent)
util.do_cmd('psbasemap %s -K -O -JM%fc -Ba30m:".%s":WSen -Bg30m %s %s >> %s'
% (r_opt, cfg.MapWidthCentimetres, title, t_opt, l_opt, my_ps_file))
# do annotations
if annotate is not None:
j_opt = '-JM%fc' % cfg.MapWidthCentimetres
ok_opt = '-K -O'
jok_opt = '%s %s' % (j_opt, ok_opt)
uga.generated_annotation(tmp_dir, my_ps_file, extent,
cfg.MapWidthCentimetres, jok_opt)
uga.user_annotation(tmp_dir, my_ps_file, extent, j_opt, ok_opt, annotate)
# figure out scale skip from max data value
skip = util.get_scale_skip(max_val)
# draw the colorbar
if cb_label:
x_offset = cfg.MapWidthCentimetres + 0.5
util.do_cmd('psscale -O -K -C%s -D%.1fc/8.0c/9.0c/0.8c -B%f:"%s": >> %s'
% (my_cpt_file, x_offset, skip, cb_label, my_ps_file))
# force close
util.do_cmd('psxy -O -J -R -T >> %s'
% (my_ps_file))
# convert PS to required type
(_, file_extension) = output_file.rsplit('.', 1)
print output_file
try:
t_opt = util.Extension2TOpt[file_extension.lower()]
print t_opt
except KeyError:
raise RuntimeError("Can't handle plot outputfile type: %s" %
file_extension)
print my_ps_file
util.do_cmd('ps2raster %s -A -T%s' % (my_ps_file, t_opt))
(my_output_file, _) = my_ps_file.rsplit('.', 1)
my_output_file += '.' + file_extension
print my_ps_file
print my_output_file
shutil.copyfile(my_output_file, output_file)
print my_output_file
# if it's required to show the graph ...
# TODO: Experimental - leave?
if show_graph:
import sys
if sys.platform == 'win32':
os.startfile(my_output_file)
else:
import subprocess
try:
subprocess.Popen(['xdg-open', my_output_file])
except OSError:
print("Sorry, the 'xdg-open' application is required to "
"automatically display images.\nYou can see the image "
"in file %s." % output_file)
# remove the temp directory
shutil.rmtree(tmp_dir)
def text_annotation(tmpdir, psfile, extent, j_opt, ok_opt, annotate):
"""
Place user text annotation on a GMT graph.
tmpdir is the path to a temporary scratch directory
psfile path to the POSTSCRIPT file to write to
extent extent of the map
j_opt the GMT J option string
ok_opt the GMT O and K option string
annotate user annotations
a list of tuples like
(type, (lon, lat), str) or
(type, (lon, lat), str, dict)
where lon, lat are lon/lat coordinate values
str is the text string to write
dict is a set of args controlling
the text write
The 'dict' annotate parameter has the form:
{'fontsize': <fontsize float>,
'colour': <colour>,
}
The user annotation string may contain any of the '@' escape sequences
described at:
http://gmt.soest.hawaii.edu/gmt/doc/gmt/html/man/pstext.html#DESCRIPTION
"""
# file we fill with annotation text
txt_file = os.path.join(tmpdir, 'data.txt')
# unpack the annotation sequence
if len(annotate) == 3:
(_, point, annstr) = annotate
anndict = {}
elif len(annotate) == 4:
(_, point, annstr, anndict) = annotate
else: # handle overflow
(_, point, annstr, anndict, _) = annotate
(x, y) = point
# set defaults, if required
fontsize = anndict.get('fontsize', DefaultFontSize)
fontno = anndict.get('fontno', DefaultFontNo)
colour = anndict.get('colour', DefaultColour)
angle = anndict.get('angle', DefaultAngle)
justify = anndict.get('justify', DefaultJustify)
linespace = anndict.get('linespace', DefaultLinespace)
parwidth = anndict.get('parwidth', DefaultParWidth)
parjust = anndict.get('parjust', DefaultParJust)
# unpack extent
(ll_lat, ll_lon, ur_lat, ur_lon) = extent
r_opt = '-R%f/%f/%f/%f' % (ll_lon, ur_lon, ll_lat, ur_lat)
# create the annotation text file
ann_hdr = ('%f %f %s %s %s %s %s'
% (x, y, fontsize, angle, fontno, justify, colour))
fd = open(txt_file, 'w')
fd.write(ann_hdr)
fd.write(annstr)
fd.close()
# annotate the plot
cmd = ('pstext %s %s %s %s -N >> %s'
% (txt_file, r_opt, j_opt, ok_opt, psfile))
util.do_cmd(cmd)
def image_annotation(tmpdir, psfile, extent, j_opt, ok_opt, annotate):
"""Image annotation.
tmpdir a temporary scratch directory
psfile output postscript file
extent extent of the map
j_opt GMT -J option string
ok_opt GMT -O and -K option string
annotate the annotation data:
('image', <posn>, <imagefile>, <kwargs>)
where <posn> is a position specifier
(string or lon,lat tuple)
<imagefile> is the path to the EPS image file
<kwargs> is a dictionary of extra args
(optional)
"""
# set default polygon attributes
framewidth = 1.0
framecolour = '0/0/0'
imagewidth = 4.0
imageheight = 3.0
# unpack the annotate command object
try:
(_, posn, imagefile, kwargs) = annotate
except ValueError:
(_, posn, imagefile) = annotate
kwargs = {}
# if given image height but not width, calculate width assuming
# aspect ratio of default image width and height, etc
if (kwargs.get('imagewidth', None) is None
and kwargs.get('imageheight', None) is not None):
kwargs['imagewidth'] = kwargs['imageheight']*imagewidth/imageheight
elif (kwargs.get('imageheight', None) is None
and kwargs.get('imagewidth', None) is not None):
kwargs['imageheight'] = kwargs['imagewidth']*imageheight/imagewidth
# override default polygon attributes from kwargs
framewidth = float(kwargs.get('framewidth', framewidth))
framecolour = kwargs.get('framecolour', framecolour)
imagewidth = float(kwargs.get('imagewidth', imagewidth))
imageheight = float(kwargs.get('imageheight', imageheight))
want_frame = not kwargs.get('noframe', False)
# set X and Y margins
margin_x = 1.0
margin_y = 1.0
# unpack the extent and get map size in cm
(ll_lat, ll_lon, ur_lat, ur_lon) = extent
(map_width, map_height) = util.get_coords_cm(ur_lon, ur_lat, extent, j_opt)
# figure out image placement, convert to cm
if isinstance(posn, basestring):
lower_posn = posn.lower()
try:
eval_str = ImagePlacement[lower_posn]
except KeyError:
raise RuntimeError("Placement string '%s' is not recognised" % posn)
else:
# we have a (lon, lat) tuple
# TODO: implement!
pass
# execute the posn eval_str - gives us x, y and justify
exec(eval_str)
# set -W option - final image size
w_opt = '-W%.2f/%.2f' % (imagewidth, imageheight)
# do -C option as well as the frame, if required
c_opt = '-C%.3f/%.3f/%s' % (x, y, justify)
if want_frame:
f_opt = '-F%.1f,%s' % (framewidth, framecolour)
# now put image into PS file
cmd = ('psimage %s %s %s %s %s >> %s'
% (imagefile, ok_opt, w_opt, c_opt, f_opt, psfile))
util.do_cmd(cmd)
def plot_gmt_xyz_image_contour(data, output_file, title=None, colourmap=None,
cb_label=None, cb_steps=None, annotate=[],
show_graph=False, bin_sum=False,
map_extent=None):
"""Plot XYZ data as a 'heatmap' and contours onto a GMT map.
data an iterable of values in xyz format (lon, lat, val)
(must be 'binned' XYZ data)
output_file path to file that should be generated (*.png, *.eps, etc)
title string used to title the plot
colourmap name of the colourmap to use, may be name of *.cpt file or
internal GMT colourmap name
cb_label label on colourmap legend
cb_steps sequence of contour values (default is no contours drawn)
annotate list of user annotations:
if None, no user or system annotations
if [], only system annotations
else system and user annotations
(see documentation for form of user annotations)
show_graph if True try to display final image in system-independant way
bin_sum True if values in grid bin are to be summed (default: mean)
map_extent sets the extent of the displayed map if supplied
(get extent from data if not supplied)
"""
# create a scratch directory for ephemeral files
tmp_dir = tempfile.mkdtemp(prefix='plot_gmt_xyz_image_contour_')
# use XYZ data bin numbers
bins = util.get_xyz_bin_inc(data, 1.0e-4)
if bins is None:
raise RuntimeError("plot_gmt_xyz_image_contour(): "
"XYZ data has no implicit binning")
(x_bins, y_bins) = bins
x_inc = '%d+' % x_bins
y_inc = '%d+' % y_bins
# set up the default GMT environment
util.set_gmt_defaults(tmp_dir)
# handle optional parameters
if title is None:
title = ''
if colourmap is None:
colourmap = DefaultColourmap
# get maximum/minimum values
max_val = num.max(data[:,2])
min_val = num.min(data[:,2])
# get extent of data
if map_extent:
extent = map_extent
else:
extent = ugxe.get_extent(data, margin=0)
(ll_lat, ll_lon, ur_lat, ur_lon) = extent
r_opt = '-R%f/%f/%f/%f' % (ll_lon, ur_lon, ll_lat, ur_lat)
# set the -J option for Mercator projection
j_opt = '-JM%fc' % cfg.MapWidthCentimetres
# write a GMT XYZ *file* (required by GMT)
tmp_xyz = os.path.join(tmp_dir, 'data.xyz')
num.savetxt(tmp_xyz, data)
# create GRD file from XYZ data
tmp_grd = os.path.join(tmp_dir, 'data.grd')
a_opt = ''
if bin_sum:
a_opt = '-A'
util.do_cmd('xyz2grd %s -G%s -I%s/%s -F %s %s'
% (tmp_xyz, tmp_grd, x_inc, y_inc, r_opt, a_opt))
# generate CPT file
tmp_cpt = os.path.join(tmp_dir, 'data.cpt')
if cb_steps is None:
cb_steps = []
if len(cb_steps) > 0:
util.make_discrete_cpt_from_seq(tmp_cpt, cb_steps)
else:
(start, stop, step) = util.get_scale_min_max_step(max_val, min_val)
cm = util.get_colourmap(c_map)
util.do_cmd('makecpt -C%s.cpt -T%f/%f/%f > %s'
% (cm, start, stop, step, tmp_cpt))
# think of a postscript filename for plot output
tmp_ps = os.path.join(tmp_dir, 'data.ps')
# draw image of gridded data
util.do_cmd('grdimage %s -K -C%s %s -Q -Sc -Ei > %s'
% (tmp_grd, tmp_cpt, j_opt, tmp_ps))
# draw contours on the image
if contours:
# make a contour file
tmp_cnt = os.path.join(tmp_dir, 'data.cnt')
fd = open(tmp_cnt, 'w')
for n in contours:
fd.write('%f A\n' % n)
fd.close()
# draw the contours
util.do_cmd('grdcontour %s -K -O -C%s %s %s >> %s'
% (tmp_grd, tmp_cnt, j_opt, r_opt, tmp_ps))
# draw the coast
util.do_cmd('pscoast %s -K -O %s -Df -W -S192/216/255 >> %s'
% (r_opt, j_opt, tmp_ps))
# draw the colorbar
if cb_label:
x_offset = cfg.MapWidthCentimetres + 0.5
util.do_cmd('psscale -K -O -E -C%s -D%.1fc/8.0c/9.0c/0.8c "-B:%s:" >> %s'
% (tmp_cpt, x_offset, cb_label, tmp_ps))
# do annotations
if annotate is not None:
ok_opt = '-K -O'
jok_opt = '%s %s' % (ok_opt, j_opt)
uga.generated_annotation(tmp_dir, tmp_ps, extent,
cfg.MapWidthCentimetres, jok_opt)
uga.user_annotation(tmp_dir, tmp_ps, extent, j_opt, ok_opt, annotate)
# draw the rest of the map
util.do_cmd('psbasemap %s -O %s "-Ba30m:.%s:WSen" -Bg30m >> %s'
% (r_opt, j_opt, title, tmp_ps))
# convert PS to required type
(_, file_extension) = output_file.rsplit('.', 1)
try:
t_opt = util.Extension2TOpt[file_extension.lower()]
except KeyError:
raise RuntimeError("Can't handle plot outputfile type: %s" %
file_extension)
util.do_cmd('ps2raster %s -A -T%s' % (tmp_ps, t_opt))
(tmp_output, _) = tmp_ps.rsplit('.', 1)
tmp_output += '.' + file_extension
shutil.copyfile(tmp_output, output_file)
# if it's required to show the graph ...
# TODO: Experimental - leave?
if show_graph:
import sys
if sys.platform == 'win32':
os.startfile(my_output_file)
else:
import subprocess
try:
subprocess.Popen(['xdg-open', my_output_file])
except OSError:
print("Sorry, the 'xdg-open' application is required to "
"automatically display images.\nYou can see the image "
"in file %s." % output_file)
# remove the temp directory
shutil.rmtree(tmp_dir)
