def _submit(runConfig):
if registry.has_run(runConfig.runid):
msg = "Runid %s does already exist" % runConfig.runid
return SubmissionResponse(runConfig.runid, SUBM_ALREADY_SUBMITTED, msg)
try:
pipeline_exec = PipelineExecution(runConfig, server_model.config)
logger.debug("PipelineExecution object for runid %s created."%runConfig.runid)
pipeline_exec.initialize()
logger.debug("PipelineExecution object for runid %s initialized."%runConfig.runid)
registry.add_run(runConfig.runid, pipeline_exec)
logger.debug("PipelineExecution object for runid %s registered."%runConfig.runid)
_ = pipeline_exec.start()
msg = "Pipeline execution for runid %s started."%runConfig.runid
logger.info(msg)
except ConfigurationError as ce:
msg = 'Submission failed with exception %s.' % str(ce)
stacktrace= 'Stacktrace: \n%s'%'\n'.join(traceback.format_stack())
logger.warn(msg)
return SubmissionResponse(runConfig.runid, SUBM_FAILED, msg, stacktrace)
except Exception as e:
msg = 'Submission failed with exception %s.' % str(e)
stacktrace= 'Stacktrace: \n%s'%'\n'.join(traceback.format_stack())
logger.error(msg)
return SubmissionResponse(runConfig.runid, SUBM_ERROR, msg, stacktrace)
try:
history.add_entry("Runid %s submitted to the system" % runConfig.runid, datetime.datetime.now())
except Exception as e:
logger.warn("Runid %s could not be appended to the history."%runConfig.runid)
msg=msg+"\n But not entry could be added the server history."
return SubmissionResponse(runConfig.runid, SUBM_EXECUTING, msg)
def main():
args = parse_cmd_args()
config=load_configuration(args.config)
data=load_inputs(args.data)
inputdataPaths={k:v for k,v in data.iteritems() if k not in (WORKDIR,LOGDIR)}
data = { RUNID : str(uuid4()),
WORKDIR : data[WORKDIR],
LOGDIR : data[LOGDIR] if LOGDIR in data else LOGDIR,
PIPELINE_SCRIPT : args.pipeline,
PIPELINE_DIR : config[PIPELINE_DIR],
PKG_REPOSITORY : config[PKG_REPOSITORY],
INPUTDATA_PATHS : inputdataPaths,
CREDENTIALS : config[CREDENTIALS] }
runConfig=RunConfiguration(data)
config=RunServerConfiguration(config)
pipeline_exec=PipelineExecution(runConfig, config)
pipeline_exec.initialize()
d = pipeline_exec.start()
COL_NAMES=('TICK', 'MODEL PATH', 'PID', 'STATUS', 'DURATION', 'OUTPUT DIR')
COL_WIDTH=(20,80,10,20,10,150)
def print_report(result):
print "".join(COL_NAMES[i].ljust(COL_WIDTH[i]) for i in range(len(COL_WIDTH)))
for entries in pipeline_exec.report:
line=[]
for key in ['tick','path','pid','status','time','workdir']:
if key=='time':
line.append("%.2f"%entries[key])
else:
line.append(entries[key])
print "".join(line[i].ljust(COL_WIDTH[i]) for i in range(len(line)))
return result
def print_output_dict(result):
if pipeline_exec.outputs:
for portname, datapath in pipeline_exec.outputs.iteritems():
print ''.join([portname.ljust(20), '-->'.ljust(5), datapath.ljust(80)])
return result
def visualize(result):
g = pipeline_exec.traverser.get_graph()
visualizer.visualize_graph(g)
return result
def failed_output(reason):
print reason
def stop_reactor(outputs):
reactor.stop()
d.addBoth(print_report)
d.addBoth(print_output_dict)
d.addErrback(failed_output)
d.addBoth(visualize)
d.addCallback(stop_reactor)
from twisted.internet import reactor
reactor.run()
def test_initialize(self):
execution = PipelineExecution(self.inputs, self.config)
execution.initialize()
self.assertTrue(execution.pipelineDir in sys.path)
self.assertTrue(execution.pipeline and isfunction(execution.pipeline))
self.assertIsInstance(execution.dataflow, Graph)
self.assertEquals(1, len(execution.dataflow.get_all_ticks()))
self.assertTrue(execution.data[CONTEXT])
self.assertTrue(execution.traverser)
def test_initialize(self):
execution = PipelineExecution(self.inputs, self.config)
execution.initialize()
self.assertTrue(execution.pipelineDir in sys.path)
self.assertTrue(execution.pipeline and isfunction(execution.pipeline))
self.assertIsInstance(execution.dataflow, Graph)
self.assertEquals(1,len(execution.dataflow.get_all_ticks()))
self.assertTrue(execution.data[CONTEXT])
self.assertTrue(execution.traverser)
def test_start_error(self):
node_callbacks.DRM=drm_access
execution = PipelineExecution(self.inputs, self.config)
execution.initialize()
test_executor=TestCmdExecutor(self.config, "1", False, 0, False, JOB_ERROR)
execution.callbacks._cmd_executor=test_executor
execution.start()
self.assertFalse(execution.outputs)
self.assertEquals(1, len(execution.report))
self.assertEquals(JOB_ERROR, execution.report[0]['status'])
self.assertEquals('1', execution.report[0]['tick'])
self.assertEquals('1', execution.report[0]['pid'])
self.assertEquals('test_exec', execution.report[0]['path'])
def test_start_success(self):
execution = PipelineExecution(self.inputs, self.config)
execution.initialize()
test_executor = TestCmdExecutor(self.config, "1", False, 0, False,
JOB_COMPLETED)
execution.callbacks._cmd_executor = test_executor
execution.start()
self.assertTrue(execution.outputs)
self.assertEquals('test_exec/c.xml', execution.outputs['c'])
self.assertEquals(1, len(execution.report))
self.assertEquals(JOB_COMPLETED, execution.report[0]['status'])
self.assertEquals('1', execution.report[0]['tick'])
self.assertEquals('1', execution.report[0]['pid'])
self.assertEquals('test_exec', execution.report[0]['path'])
result_dict = PipelineExecution.todict(execution)
self.assertEquals("1", result_dict[RUNID])
self.assertTrue(result_dict[CONFIG])
self.assertEquals("COMPLETED", result_dict[STATUS])
self.assertTrue(result_dict[SUBMITTED])
self.assertEquals("testpipeline", result_dict[PIPELINE]['name'])
self.assertTrue(result_dict[REPORT])
self.assertTrue(result_dict[INPUTS])
self.assertTrue(result_dict[OUTPUTS])
self.assertTrue(result_dict[OUTPUTS][WORKDIR])
def _submit(runConfig):
if registry.has_run(runConfig.runid):
msg = "Runid %s does already exist" % runConfig.runid
return SubmissionResponse(runConfig.runid, SUBM_ALREADY_SUBMITTED, msg)
try:
pipeline_exec = PipelineExecution(runConfig, server_model.config)
logger.debug("PipelineExecution object for runid %s created." %
runConfig.runid)
pipeline_exec.initialize()
logger.debug("PipelineExecution object for runid %s initialized." %
runConfig.runid)
registry.add_run(runConfig.runid, pipeline_exec)
logger.debug("PipelineExecution object for runid %s registered." %
runConfig.runid)
_ = pipeline_exec.start()
msg = "Pipeline execution for runid %s started." % runConfig.runid
logger.info(msg)
except ConfigurationError as ce:
msg = 'Submission failed with exception %s.' % str(ce)
stacktrace = 'Stacktrace: \n%s' % '\n'.join(traceback.format_stack())
logger.warn(msg)
return SubmissionResponse(runConfig.runid, SUBM_FAILED, msg,
stacktrace)
except Exception as e:
msg = 'Submission failed with exception %s.' % str(e)
stacktrace = 'Stacktrace: \n%s' % '\n'.join(traceback.format_stack())
logger.error(msg)
return SubmissionResponse(runConfig.runid, SUBM_ERROR, msg, stacktrace)
try:
history.add_entry("Runid %s submitted to the system" % runConfig.runid,
datetime.datetime.now())
except Exception as e:
logger.warn("Runid %s could not be appended to the history." %
runConfig.runid)
msg = msg + "\n But not entry could be added the server history."
return SubmissionResponse(runConfig.runid, SUBM_EXECUTING, msg)
def test_start_error_drm2(self):
node_callbacks.DRM = drm_access2
execution = PipelineExecution(self.inputs, self.config)
execution.initialize()
test_executor = TestCmdExecutor2(self.config, "1", False, 0, False,
JOB_ERROR)
execution.callbacks._cmd_executor = test_executor
execution.start()
self.assertFalse(execution.outputs)
self.assertEquals(1, len(execution.report))
self.assertEquals(JOB_ERROR, execution.report[0]['status'])
self.assertEquals('1', execution.report[0]['tick'])
self.assertEquals('1', execution.report[0]['pid'])
self.assertEquals('test_exec', execution.report[0]['path'])
def test_start_success(self):
execution = PipelineExecution(self.inputs, self.config)
execution.initialize()
test_executor=TestCmdExecutor(self.config, "1", False, 0, False, JOB_COMPLETED)
execution.callbacks._cmd_executor=test_executor
execution.start()
self.assertTrue(execution.outputs)
self.assertEquals('test_exec/c.xml', execution.outputs['c'])
self.assertEquals(1, len(execution.report))
self.assertEquals(JOB_COMPLETED, execution.report[0]['status'])
self.assertEquals('1', execution.report[0]['tick'])
self.assertEquals('1', execution.report[0]['pid'])
self.assertEquals('test_exec', execution.report[0]['path'])
result_dict=PipelineExecution.todict(execution)
self.assertEquals("1",result_dict[RUNID])
self.assertTrue(result_dict[CONFIG])
self.assertEquals("COMPLETED",result_dict[STATUS])
self.assertTrue(result_dict[SUBMITTED])
self.assertEquals("testpipeline",result_dict[PIPELINE]['name'])
self.assertTrue(result_dict[REPORT])
self.assertTrue(result_dict[INPUTS])
self.assertTrue(result_dict[OUTPUTS])
self.assertTrue(result_dict[OUTPUTS][WORKDIR])
def main():
args = parse_cmd_args()
config = load_configuration(args.config)
data = load_inputs(args.data)
inputdataPaths = {
k: v
for k, v in data.iteritems() if k not in (WORKDIR, LOGDIR)
}
data = {
RUNID: str(uuid4()),
WORKDIR: data[WORKDIR],
LOGDIR: data[LOGDIR] if LOGDIR in data else LOGDIR,
PIPELINE_SCRIPT: args.pipeline,
PIPELINE_DIR: config[PIPELINE_DIR],
PKG_REPOSITORY: config[PKG_REPOSITORY],
INPUTDATA_PATHS: inputdataPaths,
CREDENTIALS: config[CREDENTIALS]
}
runConfig = RunConfiguration(data)
config = RunServerConfiguration(config)
pipeline_exec = PipelineExecution(runConfig, config)
pipeline_exec.initialize()
d = pipeline_exec.start()
COL_NAMES = ('TICK', 'MODEL PATH', 'PID', 'STATUS', 'DURATION',
'OUTPUT DIR')
COL_WIDTH = (20, 80, 10, 20, 10, 150)
def print_report(result):
print "".join(COL_NAMES[i].ljust(COL_WIDTH[i])
for i in range(len(COL_WIDTH)))
for entries in pipeline_exec.report:
line = []
for key in ['tick', 'path', 'pid', 'status', 'time', 'workdir']:
if key == 'time':
line.append("%.2f" % entries[key])
else:
line.append(entries[key])
print "".join(line[i].ljust(COL_WIDTH[i])
for i in range(len(line)))
return result
def print_output_dict(result):
if pipeline_exec.outputs:
for portname, datapath in pipeline_exec.outputs.iteritems():
print ''.join(
[portname.ljust(20), '-->'.ljust(5),
datapath.ljust(80)])
return result
def visualize(result):
g = pipeline_exec.traverser.get_graph()
visualizer.visualize_graph(g)
return result
def failed_output(reason):
print reason
def stop_reactor(outputs):
reactor.stop()
d.addBoth(print_report)
d.addBoth(print_output_dict)
d.addErrback(failed_output)
d.addBoth(visualize)
d.addCallback(stop_reactor)
from twisted.internet import reactor
reactor.run()