def get_complex_words(tokenised_string):
dataframe = pd.DataFrame()
dataframe['word'] = tokenised_string
dataframe['binary'] = 'N'
dataframe.to_csv('./' + 'complex_word' + '.txt',
sep='\t',
index=False,
header=False,
quotechar=' ')
sentences_test = experiment.read_input_files('./complex_word.txt')
batches_of_sentence_ids = experiment.create_batches_of_sentence_ids(
sentences_test, config["batch_equal_size"], config['max_batch_size'])
for sentence_ids_in_batch in batches_of_sentence_ids:
batch = [sentences_test[i] for i in sentence_ids_in_batch]
cost, predicted_labels, predicted_probs = model.process_batch(
batch, is_training=False, learningrate=0.0)
try:
assert (len(sentence_ids_in_batch) == len(predicted_labels))
except:
print('cw error')
prob_labels = predicted_probs[0]
probability_list = []
for prob_pair in prob_labels:
probability_list.append(prob_pair[1])
return probability_list
def get_prob_labels(self):
try:
sentences_test = experiment.read_input_files(self.temp_file)
batches_of_sentence_ids = experiment.create_batches_of_sentence_ids(
sentences_test, self.config["batch_equal_size"],
self.config['max_batch_size'])
except:
return 'error'
for sentence_ids_in_batch in batches_of_sentence_ids:
batch = [sentences_test[i] for i in sentence_ids_in_batch]
cost, predicted_labels, predicted_probs = self.model.process_batch(
batch, is_training=False, learningrate=0.0)
try:
assert (len(sentence_ids_in_batch) == len(predicted_labels))
except:
return 'error'
prob_labels = predicted_probs[0]
probability_list = []
for prob_pair in prob_labels:
probability_list.append(prob_pair[1])
return probability_list
def get_dataframe():
sentences_test = experiment.read_input_files(temp_file)
batches_of_sentence_ids = experiment.create_batches_of_sentence_ids(
sentences_test, config["batch_equal_size"],
config['max_batch_size'])
for sentence_ids_in_batch in batches_of_sentence_ids:
batch = [sentences_test[i] for i in sentence_ids_in_batch]
cost, predicted_labels, predicted_probs = model.process_batch(
batch, is_training=False, learningrate=0.0)
try:
assert (len(sentence_ids_in_batch) == len(predicted_labels))
except:
print('batch size error')
prob_labels = predicted_probs[0]
probability_list = []
for prob_pair in prob_labels:
probability_list.append(prob_pair[1])
annotated_sentences = pd.DataFrame()
sentences = [sentences_test[i] for i in sentence_ids_in_batch]
annotated_sentences['index'] = sentence_ids_in_batch
annotated_sentences['sentences'] = sentences
annotated_sentences['labels'] = predicted_labels
annotated_sentences['probs'] = predicted_probs
return annotated_sentences
import sys
from model import MLTModel
from evaluator import MLTEvaluator
from experiment import read_input_files
if __name__ == "__main__":
model = MLTModel.load(sys.argv[1])
data = read_input_files(sys.argv[2], -1)
batch_size = 32
# Evaluator
evaluator = MLTEvaluator(model.config)
for i in range(0, len(data), batch_size):
batch = data[i:i+batch_size]
cost, sentence_scores, token_scores_list = model.process_batch_inference(batch, False, 0.0)
for j in range(len(batch)):
for k in range(len(batch[j])):
print(" ".join([str(x) for x in batch[j][k]]) + "\t" + str(token_scores_list[0][j][k]) + "\t" + str(sentence_scores[j]))
print("")
# Evaluator
evaluator.append_data(cost, batch, sentence_scores, token_scores_list)
# Evaluator
results = evaluator.get_results("test")
for key in results:
sys.stderr.write(key + ": " + str(results[key]) + "\n")
def print_predictions(print_probs, model_path, input_file):
time_loading = time.time()
model = labeler.SequenceLabeler.load(model_path)
time_noloading = time.time()
config = model.config
predictions_cache = {}
num_additional_features = config['num_additional_features']
num_additional_feature_vectors = config.get('num_additional_feature_vectors', 1)
id2label = collections.OrderedDict()
for label in model.label2id:
id2label[model.label2id[label]] = label
sentences_test = experiment.read_input_files(input_file)
batches_of_sentence_ids = experiment.create_batches_of_sentence_ids(sentences_test, config["batch_equal_size"], config['max_batch_size'])
feature_path = experiment.read_input_features(input_file, 'models/features/')
for sentence_ids_in_batch in batches_of_sentence_ids:
batch = [
numpy.concatenate((sentences_test[i],
experiment.load_sentence_id(
feature_path,
i,
num_additional_features, num_additional_feature_vectors)), axis=1) for i in sentence_ids_in_batch
]
#batch = [sentences_test[i] for i in sentence_ids_in_batch]
cost, predicted_labels, predicted_probs = model.process_batch(batch, is_training=False, learningrate=0.0)
assert(len(sentence_ids_in_batch) == len(predicted_labels))
for i in range(len(sentence_ids_in_batch)):
key = str(sentence_ids_in_batch[i])
predictions = []
if print_probs == False:
for j in range(len(predicted_labels[i])):
predictions.append(id2label[predicted_labels[i][j]])
elif print_probs == True:
for j in range(len(predicted_probs[i])):
p_ = ""
for k in range(len(predicted_probs[i][j])):
p_ += str(id2label[k]) + ":" + str(predicted_probs[i][j][k]) + "\t"
predictions.append(p_.strip())
predictions_cache[key] = predictions
sentence_id = 0
word_id = 0
with open(input_file, "r") as f:
for line in f:
if len(line.strip()) == 0:
print("")
if word_id == 0:
continue
assert(len(predictions_cache[str(sentence_id)]) == word_id), str(len(predictions_cache[str(sentence_id)])) + " " + str(word_id)
sentence_id += 1
word_id = 0
continue
assert(str(sentence_id) in predictions_cache)
assert(len(predictions_cache[str(sentence_id)]) > word_id)
t, g, *_ = line.strip().split('\t')
print('{}\t{}\tNaN\t{}'.format(t, g, predictions_cache[str(sentence_id)][word_id].strip()))
word_id += 1
sys.stderr.write("Processed: " + input_file + "\n")
sys.stderr.write("Elapsed time with loading: " + str(time.time() - time_loading) + "\n")
sys.stderr.write("Elapsed time without loading: " + str(time.time() - time_noloading) + "\n")