def setUp(self):
rpdr_note1 = extract_values.RPDRNote(
{
'EMPI': 'empi1',
'MRN_Type': 'mrn_type1',
'Report_Number': '1231',
'MRN': '1231',
'Report_Type': 'report_type1',
'Report_Description': 'report_description1'
}, 'note1')
rpdr_note2 = extract_values.RPDRNote(
{
'EMPI': 'empi2',
'MRN_Type': 'mrn_type2',
'Report_Number': '1232',
'MRN': '1232',
'Report_Type': 'report_type2',
'Report_Description': 'report_description2'
}, 'note2')
rpdr_note3 = extract_values.RPDRNote(
{
'EMPI': 'empi3',
'MRN_Type': 'mrn_type3',
'Report_Number': '1233',
'MRN': '1233',
'Report_Type': 'report_type3',
'Report_Description': 'report_description3'
}, 'note3')
self.rpdr_notes = [rpdr_note1, rpdr_note2, rpdr_note3]
def setUp(self):
self.rpdr_note = extract_values.RPDRNote(
{
'EMPI': 'empi1',
'MRN_Type': 'mrn_type1',
'Report_Number': '1231',
'MRN': '1231',
'Report_Type': 'report_type1',
'Report_Description': 'report_description1'
}, 'ventilate')
def test_extract_date_one_digit_day(self):
phrase_match_context = extract_values.PhraseMatchContexts(0, 0)
rpdr_note2 = extract_values.RPDRNote(
{
'EMPI': 'empi1',
'MRN_Type': 'mrn_type1',
'Report_Number': '1231',
'MRN': '1231',
'Report_Type': 'report_type1',
'Report_Description': 'report_description1'
}, 'date is 2-2-22')
note_phrase_matches = extract_values._extract_phrase_from_notes(
2, ['date'], rpdr_note2, phrase_match_context)
phrase_matches = note_phrase_matches.phrase_matches
self.assertEqual(1, len(phrase_matches))
self.assertEqual('2-2-22', phrase_matches[0].extracted_value)
def test_extract_numerical(self):
phrase_match_context = extract_values.PhraseMatchContexts(0, 0)
rpdr_note2 = extract_values.RPDRNote(
{
'EMPI': 'empi1',
'MRN_Type': 'mrn_type1',
'Report_Number': '1231',
'MRN': '1231',
'Report_Type': 'report_type1',
'Report_Description': 'report_description1'
}, 'ef 2.0')
note_phrase_matches = extract_values._extract_phrase_from_notes(
1, ['ef'], rpdr_note2, phrase_match_context)
phrase_matches = note_phrase_matches.phrase_matches
self.assertEqual(1, len(phrase_matches))
self.assertEqual(2.0, phrase_matches[0].extracted_value)
def test_match_space_surround1(self):
phrase_match_context = extract_values.PhraseMatchContexts(0, 0)
rpdr_note2 = extract_values.RPDRNote(
{
'EMPI': 'empi1',
'MRN_Type': 'mrn_type1',
'Report_Number': '1231',
'MRN': '1231',
'Report_Type': 'report_type1',
'Report_Description': 'report_description1'
}, ' ventilate')
note_phrase_matches = extract_values._extract_phrase_from_notes(
0, ['ventilate'], rpdr_note2, phrase_match_context)
phrase_matches = note_phrase_matches.phrase_matches
self.assertEqual(1, len(phrase_matches))
phrase_match = phrase_matches[0]
self.assertEqual(1, phrase_match.extracted_value)
def test_many_matches_same_phrase(self):
phrase_match_context = extract_values.PhraseMatchContexts(0, 0)
rpdr_note2 = extract_values.RPDRNote(
{
'EMPI': 'empi1',
'MRN_Type': 'mrn_type1',
'Report_Number': '1231',
'MRN': '1231',
'Report_Type': 'report_type1',
'Report_Description': 'report_description1'
}, 'ventilate ventilate alex alex alex ventilate, ventilate alex')
note_phrase_matches = extract_values._extract_phrase_from_notes(
0, ['ventilate'], rpdr_note2, phrase_match_context)
phrase_matches = note_phrase_matches.phrase_matches
self.assertEqual(4, len(phrase_matches))
for phrase_match in phrase_matches:
self.assertEqual(1, phrase_match.extracted_value)
def test_match_beginning_punctuation_ignore_true(self):
phrase_match_context = extract_values.PhraseMatchContexts(0, 0)
rpdr_note2 = extract_values.RPDRNote(
{
'EMPI': 'empi1',
'MRN_Type': 'mrn_type1',
'Report_Number': '1231',
'MRN': '1231',
'Report_Type': 'report_type1',
'Report_Description': 'report_description1'
}, 'ventilate.')
rpdr_note2.remove_punctuation_from_note()
note_phrase_matches = extract_values._extract_phrase_from_notes(
0, ['ventilate'], rpdr_note2, phrase_match_context)
phrase_matches = note_phrase_matches.phrase_matches
self.assertEqual(1, len(phrase_matches))
phrase_match = phrase_matches[0]
self.assertEqual(1, phrase_match.extracted_value)
def test_multiple_matches_different_phrase(self):
phrase_match_context = extract_values.PhraseMatchContexts(0, 0)
rpdr_note2 = extract_values.RPDRNote(
{
'EMPI': 'empi1',
'MRN_Type': 'mrn_type1',
'Report_Number': '1231',
'MRN': '1231',
'Report_Type': 'report_type1',
'Report_Description': 'report_description1'
}, 'ventilate g-tube')
note_phrase_matches = extract_values._extract_phrase_from_notes(
0, ['ventilate', 'g-tube'], rpdr_note2, phrase_match_context)
phrase_matches = note_phrase_matches.phrase_matches
self.assertEqual(2, len(phrase_matches))
self.assertEqual(0, phrase_matches[0].match_start)
self.assertEqual(10, phrase_matches[0].match_end)
for phrase_match in phrase_matches:
self.assertEqual(1, phrase_match.extracted_value)
