def install(self):
old_sys_path = sys.path
try:
save_path = self.download()
sys.path.insert(0, save_path)
# Run ez_setup.py to install setuptools
from ez_setup import main
try:
main([])
except SystemExit, e:
if e.code != 0:
raise InstallationError("Setuptools installation failed.")
# Load previously-installed packages/eggs in new python dir
addsitedir(os.path.dirname(save_path))
def install(self):
old_sys_path = sys.path
try:
save_path = self.download()
sys.path.insert(0, save_path)
# Run ez_setup.py to install setuptools
from ez_setup import main
try:
main([])
except SystemExit, e:
if e.code != 0:
raise InstallationError("Setuptools installation failed.")
# Load previously-installed packages/eggs in new python dir
addsitedir(os.path.dirname(save_path))
def main(argv = None):
if not argv:
argv = sys.argv
#ARG PARSING
parser = optparse.OptionParser(usage=__doc__)
parser.add_option("-l", "--install-dir", dest="libdir",
help="""Directory that libraries will be installed, use if you do not have root access
You will need to set your PYTHONPATH environment variable for this procedure""")
parser.add_option("-g", "--egg-dir",dest="eggdir", default=sys.path[0],
help="""Egg directory for scanning.""")
parser.add_option("-e", "--easy-install", dest="easyinstalldir",
help="""The path to easy_install, if it does not exist on the default path.""")
parser.add_option("-s", "--script-dir", dest="scriptdir",
help="""Directory you would like to executeables to. Defaults to working directory when run""")
dctOptions, lstArgs = parser.parse_args(argv)
#BASE DIRECTORIES
if dctOptions.scriptdir:
script_dir = dctOptions.scriptdir
else:
script_dir = sys.path[0]
#LOOK FOR CONFIG FILE
dependencies = []
config_file = findFiles(sys.path[0], re.compile("Install.cfg", re.IGNORECASE))
if config_file:
fConfig = open(config_file[0])
print "Found Config File: " + config_file[0]
for line in fConfig:
dependencies.append(line)
print "Found Dependency: " + line
#EASYINSTALL
if not dctOptions.easyinstalldir:
print "INSTALLING SETUPTOOLS"
print "\n------------------------------------------------\n"
try:
import ez_setup
except:
try:
from data import ez_setup
except:
print "\nUnable to load SetupTools, please either install easy_install or have ez_setup.py in the same directory as this program\n"
print "If you have easy_install already on your system, use --easy-install to define it's location"
sys.exit(1)
if not dctOptions.libdir:
items = ["--script-dir=" + script_dir, "-U", "setuptools"]
else:
items = ["--script-dir=" + script_dir, "--install-dir=" + os.path.expanduser(dctOptions.libdir), "-U", "setuptools"]
#CAPTURE OUTPUT FROM EZSETUP
saved = sys.stdout
net = StringIO()
sys.stdout = net
ez_setup.main(items)
sys.stdout = saved
net.seek(0)
#SEARCH FOR INSTALLATION DIRECTORY OF EASY INSTALL
p1 = re.compile('Installing easy_install script to', re.IGNORECASE)
for line in net.readlines():
print line
m1 = p1.match(line)
if m1:
install_items = line.split()
setattr(dctOptions, 'easyinstalldir', install_items[len(install_items)-1])
break
#FIND EGGS
Eggs = findFiles(dctOptions.eggdir, re.compile("[.]egg", re.IGNORECASE))
easyinstall = os.path.join(dctOptions.easyinstalldir, "easy_install")
Eggs += dependencies
#INSTALL EGGS
for Egg in Eggs:
print "\n------------------------------------------------\n"
print "SETTING UP " + Egg + ":"
try:
if dctOptions.libdir:
lstArgs = [easyinstall, "--script-dir=" + script_dir, "--install-dir=" + os.path.expanduser(dctOptions.libdir), "-U", Egg]
else:
lstArgs = [easyinstall, "--script-dir=" + script_dir, "-U", Egg]
check_call(lstArgs)
print "\n------------------------------------------------\n"
except:
print "\n------------------------------------------------\n"
continue
self.installStatusDialog.showMessage("Copying file '%s' to '%s' "%
(fileN, os.path.join(self.installPaths[val],
os.path.basename(fileN))))
else:
shutil.copy(fileN, os.path.join(self.installPaths["pyRoot"], os.path.basename(fileN)))
self.installStatusDialog.showMessage("Copying file '%s' to '%s' "%
(fileN, os.path.join(self.installPaths[val],
os.path.basename(fileN))))
#=======================================================================
# STEP 4: Initiate subprocess calls
#=======================================================================
fileN = os.path.join(self.installPaths["pyRoot"], "ez_setup.py")
self.installStatusDialog.showMessage("Running '%s' "%(fileN))
import subprocess
import ez_setup
print ez_setup.main("")
slicer.app.processEvents()
easyInst = os.path.join(self.installPaths["pyRoot"], "Scripts/easy_install")
#=======================================================================
# STEP 5: Construct and run command
#=======================================================================
command = "\"" + os.path.normpath(easyInst) + "\"" + " httplib2"
self.beginProcess(command, "httplib2")
slicer.app.processEvents()
command = ("\"" + os.path.normpath(easyInst) + "\""
+ " " + "\"" +
os.path.normpath(os.path.join(self.installPaths["pyRoot"],
"lxml-2.2.8-py2.6-win-amd64.egg")) + "\"")
self.beginProcess(command, "lxml")
slicer.app.processEvents()#test
# Get ez_setup:
ez_setup_path = os.path.join(site_dir, 'ez_setup.py')
if not os.path.exists(ez_setup_path):
f = file(ez_setup_path, 'w')
f.write(
urllib2.urlopen(
'http://peak.telecommunity.com/dist/ez_setup.py').read())
f.close()
# Install nose if not present
try:
import nose
except ImportError:
import ez_setup
ez_setup.main(['--install-dir', site_dir, 'nose'])
for mod in sys.modules.keys():
if mod.startswith('nose'):
del sys.modules[mod]
for path in sys.path:
if path.startswith(site_dir):
sys.path.remove(site_dir)
site.addsitedir(site_dir)
import nose
print "find tests in ", TESTS_DIR
# Run Tests!
nose.run(argv=[
'nosetests', '-v', '--with-xunit', '--where=' +
TESTS_DIR, '--xunit-file=' + cwd + '/TEST-Sikuli-Python-Suite.xml'
] + sys.argv[1:])
def main():
"""Main function that is called at the install of Domoweb."""
from optparse import OptionParser
p = OptionParser(usage="usage: %prog [options]",
version="Install for Domoweb 0.4")
p.add_option('--uninstall',
dest='uninstall',
action="store_true",
help="Uninstall Domoweb")
p.add_option('--simul',
dest='simul',
action="store_true",
help="Simulation mode for Uninstall")
p.add_option('--nodeps',
dest='nodeps',
action="store_true",
help="Do not install dependencies")
p.add_option('-u',
'--user',
dest='user',
default=None,
help="User that will run Domoweb (default: domoweb)")
p.add_option(
'--libdir',
dest='libdir',
default='/var/lib/domoweb',
help="Folder for domoweb lib files (default: /var/lib/domoweb)")
p.add_option(
'--logdir',
dest='logdir',
default='/var/log/domoweb',
help="Folder for domoweb log files (default: /var/log/domoweb)")
p.add_option(
'--piddir',
dest='piddir',
default='/var/run/domoweb',
help="Folder for domoweb pid files (default: /var/run/domoweb)")
p.add_option('--noconfig',
dest='noconfig',
action="store_true",
help="Do not install Init and /etc files")
p.add_option('--nodbupdate',
dest='nodbupdate',
action="store_true",
help="Do not update the Domoweb DB")
p.add_option('--notest',
dest='notest',
action="store_true",
help="Do not test Domoweb Installation")
p.add_option(
'--db',
dest='db',
default='/var/lib/domoweb/db.sqlite',
help="Force domoweb DB file (default: /var/lib/domoweb/db.sqlite)")
p.add_option('--noclean',
dest='noclean',
action="store_true",
help="Do not clean old Domoweb install")
p.add_option('--nousercheck',
dest='nousercheck',
action="store_true",
help="Do not check for user account")
p.add_option('--nofoldercreation',
dest='nofoldercreation',
action="store_true",
help="Do not create folders")
# parse command line for defined options
options, args = p.parse_args()
# Initial Clean
if not options.noclean:
clean()
# Uninstall
if options.uninstall:
uninstall(options.simul)
sys.exit(0)
# Dependencies
if options.nodeps:
warning('Not installing dependencies')
else:
info("Installing setuptools...")
import ez_setup
ez_setup.main('')
info("Installing dependencies...")
install_dependencies()
# Domoweb User
if options.nousercheck:
warning('Not checking user')
else:
info("Checking user")
if options.user:
user = options.user
else:
user = raw_input(
'Which user will run domogik (default : domoweb)? ')
if not user:
user = '******'
test_user(user)
# Domoweb folders creation
if options.nofoldercreation:
warning('Not creating folders')
else:
info("Checking %s folder" % options.libdir)
createFolder(options.libdir, user)
info("Checking %s folder" % options.logdir)
createFolder(options.logdir, user)
info("Checking %s folder" % options.piddir)
createFolder(options.piddir, user)
info("Copying default files")
installFiles(options.libdir, user)
# Config files
if options.noconfig:
warning('Not installing Init and /etc files')
else:
upgradeOld()
installConfig(user)
installDefault(user)
installInit()
installLogrotate()
# Update DB
if options.nodbupdate:
warning('Not updating Domoweb DB')
else:
info("Updating Domoweb DB...")
updateDb(user, options.db)
# Adding module path to PYTHONPATH
if sitepackages:
mypth = os.path.join(sitepackages, "domoweb.pth")
path_to_add = os.path.abspath(os.path.dirname(__file__))
ok("Adding %s to site-packages" % path_to_add)
with open(mypth, "a") as f:
f.write(path_to_add)
f.write("\n")
else:
fail('site-packages not found')
# Test installation
if options.notest:
warning('Not testing Domoweb Installation')
else:
ok("Everything seems to be good, DomoWeb should be installed correctly."
)
ok("Testing installation")
#raw_input('Please press Enter when ready.')
try:
testConfigFiles()
testInit()
tornado_url = getTornadoUrl()
print "\n\n"
ok("================================================== <==")
ok(" Everything seems ok, you should be able to start <==")
ok(" DomoWeb with /etc/init.d/domoweb start <==")
ok(" or /etc/rc.d/domoweb start <==")
ok(" DomoWeb UI is available on <==")
ok(" %49s <==" % tornado_url)
ok("================================================== <==")
except:
fail(sys.exc_info()[1])
def main():
"""Main function that is called at the install of Domoweb."""
from optparse import OptionParser
p = OptionParser(usage="usage: %prog [options]",
version="Install for Domoweb 0.4")
p.add_option('--uninstall',
dest='uninstall',
action="store_true",
help="Uninstall Domoweb")
p.add_option('--simul',
dest='simul',
action="store_true",
help="Simulation mode for Uninstall")
p.add_option('--nodeps',
dest='nodeps',
action="store_true",
help="Do not install dependencies")
p.add_option('-u', '--user',
dest='user',
default=None,
help="User that will run Domoweb (default: domoweb)")
p.add_option('--libdir',
dest='libdir',
default='/var/lib/domoweb',
help="Folder for domoweb lib files (default: /var/lib/domoweb)")
p.add_option('--logdir',
dest='logdir',
default='/var/log/domoweb',
help="Folder for domoweb log files (default: /var/log/domoweb)")
p.add_option('--piddir',
dest='piddir',
default='/var/run/domoweb',
help="Folder for domoweb pid files (default: /var/run/domoweb)")
p.add_option('--noconfig',
dest='noconfig',
action="store_true",
help="Do not install Init and /etc files")
p.add_option('--nodbupdate',
dest='nodbupdate',
action="store_true",
help="Do not update the Domoweb DB")
p.add_option('--notest',
dest='notest',
action="store_true",
help="Do not test Domoweb Installation")
p.add_option('--db',
dest='db',
default='/var/lib/domoweb/db.sqlite',
help="Force domoweb DB file (default: /var/lib/domoweb/db.sqlite)")
p.add_option('--noclean',
dest='noclean',
action="store_true",
help="Do not clean old Domoweb install")
p.add_option('--nousercheck',
dest='nousercheck',
action="store_true",
help="Do not check for user account")
p.add_option('--nofoldercreation',
dest='nofoldercreation',
action="store_true",
help="Do not create folders")
# parse command line for defined options
options, args = p.parse_args()
# Initial Clean
if not options.noclean:
clean()
# Uninstall
if options.uninstall:
uninstall(options.simul)
sys.exit(0)
# Dependencies
if options.nodeps:
warning('Not installing dependencies')
else:
info("Installing setuptools...")
import ez_setup
ez_setup.main('')
info("Installing dependencies...")
install_dependencies()
# Domoweb User
if options.nousercheck:
warning('Not checking user')
else:
info("Checking user")
if options.user:
user = options.user
else:
user = raw_input('Which user will run domogik (default : domoweb)? ')
if not user:
user = '******'
test_user(user)
# Domoweb folders creation
if options.nofoldercreation:
warning('Not creating folders')
else:
info("Checking %s folder" % options.libdir)
createFolder(options.libdir, user)
info("Checking %s folder" % options.logdir)
createFolder(options.logdir, user)
info("Checking %s folder" % options.piddir)
createFolder(options.piddir, user)
info("Copying default files")
installFiles(options.libdir, user)
# Config files
if options.noconfig:
warning('Not installing Init and /etc files')
else:
upgradeOld()
installConfig(user)
installDefault(user)
installInit()
installLogrotate()
# Update DB
if options.nodbupdate:
warning('Not updating Domoweb DB')
else:
info("Updating Domoweb DB...")
updateDb(user, options.db)
# Adding module path to PYTHONPATH
if sitepackages:
mypth = os.path.join(sitepackages, "domoweb.pth")
path_to_add = os.path.abspath(os.path.dirname(__file__))
ok("Adding %s to site-packages" % path_to_add)
with open(mypth, "a") as f:
f.write(path_to_add)
f.write("\n")
else:
fail('site-packages not found')
# Test installation
if options.notest:
warning('Not testing Domoweb Installation')
else:
ok("Everything seems to be good, DomoWeb should be installed correctly.")
ok("Testing installation")
raw_input('Please press Enter when ready.')
try:
testConfigFiles()
testInit()
tornado_url = getTornadoUrl()
print "\n\n"
ok("================================================== <==")
ok(" Everything seems ok, you should be able to start <==")
ok(" DomoWeb with /etc/init.d/domoweb start <==")
ok(" or /etc/rc.d/domoweb start <==")
ok(" DomoWeb UI is available on <==")
ok(" %49s <==" % tornado_url)
ok("================================================== <==")
except:
fail(sys.exc_info()[1])
try:
# check if we have ez_setup available
import ez_setup
except ImportError, e:
# retrieve ez_setup.py from the interweb
EZ_URL = "http://peak.telecommunity.com/dist/ez_setup.py"
ez_filename = os.path.join(os.path.dirname(__file__), 'ez_setup.py')
file(ez_filename, 'w').write(urllib2.urlopen(EZ_URL).read())
import ez_setup
os.environ['PYTHONPATH'] = (os.environ.setdefault('PYTHONPATH', '') + ":" +
libdir)
ez_setup.main(
['--install-dir', libdir, '--script-dir', bindir, '-U', 'setuptools'])
def initSetupCfg(setup_file, template_file='setup.cfg.in'):
"""Check if the setup_file (setup.cfg) exists; if it doesn't, and
setup.cfg.in does, copy setup.cfg.in to setup.cfg to serve as a
template."""
if not (os.path.exists(setup_file)) and os.path.exists(template_file):
shutil.copyfile(template_file, setup_file)
def updateSetupCfg(setup_file, opts):
"""Update or create a setup.cfg (setup_file) for working on this
project."""
############################## MAIN #########################
def main(args=sys.argv[1:]):
env = Environment()
env.initialize()
installers = [
SetuptoolsInstaller(),
Hdf5Installer(env),
NumpyInstaller(),
RInstaller(env),
Rpy2Installer(),
RlibsInstaller(),
PytablesInstaller(),
SegtoolsInstaller()
]
for installer in installers:
installer.run()
# Next step may need just-installed eggs, so update site list
env.refresh_packages()
# DONE: Test package installations?
TestSuite().run([PytablesTester()])
env.close()
if __name__ == "__main__":
sys.exit(main())
class GenomedataInstaller(EasyInstaller):
name = "Genomedata"
min_version = PKG_VERSION
get_version = EasyInstaller.get_egg_version
############################## MAIN #########################
def main(args=sys.argv[1:]):
env = Environment()
env.initialize()
installers = [SetuptoolsInstaller(),
Hdf5Installer(env),
NumpyInstaller(),
PytablesInstaller(),
GenomedataInstaller()]
for installer in installers:
installer.run()
# Next step may need just-installed eggs, so update site list
env.refresh_packages()
# DONE: Test package installations?
TestSuite().run([PytablesTester()])
env.close()
if __name__ == "__main__":
sys.exit(main())
def install(package, version = None):
if len(package) == 0:
return
if version!=None and len(version)>0:
package = "%(p)s==%(v)s" % {"p" : package, "v" : version}
ez_setup.main([package])
os.environ["PYTHONPATH"] = os.pathsep.join(sys.path)
# Get ez_setup:
ez_setup_path = os.path.join(site_dir, "ez_setup.py")
if not os.path.exists(ez_setup_path):
f = file(ez_setup_path, "w")
f.write(urllib2.urlopen("http://peak.telecommunity.com/dist/ez_setup.py").read())
f.close()
# Install nose if not present
try:
import nose
except ImportError:
import ez_setup
ez_setup.main(["--install-dir", site_dir, "nose"])
for mod in sys.modules.keys():
if mod.startswith("nose"):
del sys.modules[mod]
for path in sys.path:
if path.startswith(site_dir):
sys.path.remove(site_dir)
site.addsitedir(site_dir)
import nose
print "find tests in ", TESTS_DIR
# Run Tests!
nose.run(
argv=[
"nosetests",