def readpeaks(self, peaksfilename, imagefile):
"""
read in peaks found with peaksearch (ImageD11)
"""
self.lines = open(peaksfilename, "r").readlines()
self.images = {}
i = -1
for line in self.lines:
i += 1
if line[0:6] == "# File":
name = line.split()[-1]
self.images[name] = i
# stem, numb, filetype = deconstruct_filename(imagefile)
fsobj = filename_series(imagefile)
start = self.images[imagefile]
try:
end = self.images[next(fsobj)]
except:
end = len(self.lines)
i = start + 1
line = self.lines[i]
for line in self.lines[start:end]:
if line[0] != '#' and len(line) > 10:
try:
[npixels, yt, ypos, zpos] = line.split()[0:4]
self.peaks.append([npixels, ypos, zpos])
except:
pass
def test_with_filename_series(self):
first_filename = self.get_filename("image_c_000.edf")
filenames = filename_series(first_filename)
serie = FileSeries(filenames=filenames)
self.assertEqual(serie.nframes, 10)
serie.close()
def test_with_filename_series(self):
first_filename = self.get_filename("image_c_000.edf")
filenames = filename_series(first_filename)
serie = FileSeries(filenames=filenames)
self.assertEqual(serie.nframes, 10)
serie.close()