def test_1_download_low_complexity(self):
dst = os.path.join(self.synthetic, self.lowc)
subprocess.check_call(["wget", "{url}".format(url=self.fames_urlbase+self.lowc),
"-O", dst])
with helpers.cd(self.synthetic):
subprocess.check_call(['tar', 'xfz', self.lowc])
os.remove(self.lowc)
def test_1_fetch_simNGS(self):
""" Downloads and installs simNGS locally
"""
dirname, fname = helpers._fetch_and_unpack(self.simngs_url)
simngs = os.path.join(dirname, "bin", "simNGS")
simlib = os.path.join(dirname, "bin", "simLibrary")
runfile = os.path.join(dirname, "data", "s_3_4x.runfile")
with helpers.cd(dirname):
os.chdir("src")
subprocess.check_call(["make"])
helpers._move_p(simngs, self.progs)
helpers._move_p(simlib, self.progs)
helpers._move_p(runfile, self.progs)
