def handle_resource(resource_type):
if resource_type == 'metadata':
return redirect("/static/doc/metadata")
if resource_type in [
'callsets', 'variantsets', 'readgroupsets', 'referencesets',
'variant'
]:
if request.method == 'GET':
return ga4gh.api.ga_handle_search(request, resource_type)
elif resource_type in [
'variantset', 'genomes', 'files', 'runs', 'genomes'
]:
if request.method == 'GET':
return basespace.api.bs_handle_search(request, resource_type)
elif resource_type in RESOURCES:
if request.method == 'GET':
return ttam.api.ttam_handle_search(request, resource_type)
else:
return fhir_error.inform_not_found()
g.api_base = request.api_base = util.get_api_base()
fhir_request = fhir_api.FHIRRequest(request)
if request.method == 'GET':
return fhir_api.handle_search(fhir_request, resource_type)
else:
return fhir_api.handle_create(fhir_request, resource_type)
def handle_resources(resource_type, resource_id):
if resource_type in [
'callsets', 'variantsets', 'readgroupsets', 'referencesets',
'variant'
]:
if request.method == 'GET':
return ga4gh.api.ga_handle_read(request, resource_type,
resource_id)
elif resource_type in [
'variantset', 'genomes', 'files', 'runs', 'genomes'
]:
if request.method == 'GET':
return basespace.api.bs_handle_read(request, resource_type,
resource_id)
elif resource_type in RESOURCES:
if request.method == 'GET':
return ttam.api.ttam_handle_read(request, resource_type,
resource_id)
else:
return fhir_error.inform_not_found()
request.api_base = util.get_api_base()
fhir_request = fhir_api.FHIRRequest(request, is_resource=False)
if request.method == 'GET':
return fhir_api.handle_read(fhir_request, resource_type, resource_id)
elif request.method == 'PUT':
return fhir_api.handle_update(fhir_request, resource_type, resource_id)
else:
return fhir_api.handle_delete(fhir_request, resource_type, resource_id)
def read_history(resource_type, resource_id, version):
if resource_type is not None and resource_type not in RESOURCES:
return fhir_error.inform_not_found()
request.api_base = util.get_api_base()
fhir_request = fhir_api.FHIRRequest(request)
return fhir_api.handle_history(fhir_request, resource_type, resource_id,
version)
def handle_resource(resource_type):
if resource_type not in RESOURCES:
return fhir_error.inform_not_found()
g.api_base = request.api_base = util.get_api_base()
fhir_request = fhir_api.FHIRRequest(request)
if request.method == 'GET':
return fhir_api.handle_search(fhir_request, resource_type)
else:
return fhir_api.handle_create(fhir_request, resource_type)
def handle_resources(resource_type, resource_id):
if resource_type not in RESOURCES:
return fhir_error.inform_not_found()
request.api_base = util.get_api_base()
fhir_request = fhir_api.FHIRRequest(request, is_resource=False)
if request.method == 'GET':
return fhir_api.handle_read(fhir_request, resource_type, resource_id)
elif request.method == 'PUT':
return fhir_api.handle_update(fhir_request, resource_type, resource_id)
else:
return fhir_api.handle_delete(fhir_request, resource_type, resource_id)
def handle_resource(resource_type):
if resource_type in [
'callsets', 'variantsets', 'readgroupsets', 'referencesets',
'variant'
]:
if request.method == 'GET':
return ga4gh.api.ga_handle_search(request, resource_type)
if resource_type not in RESOURCES:
return fhir_error.inform_not_found()
g.api_base = request.api_base = util.get_api_base()
fhir_request = fhir_api.FHIRRequest(request)
if request.method == 'GET':
return fhir_api.handle_search(fhir_request, resource_type)
else:
return fhir_api.handle_create(fhir_request, resource_type)
