def create_tablewriter(self):
entities = {
'step': {'unit': '<>',
'get': lambda sim: sim.step,
'header': 'step'},
'm': {'unit': '<>',
'get': lambda sim: sim.compute_average(),
'header': ('m_x', 'm_y', 'm_z')},
'skx_num':{'unit': '<>',
'get': lambda sim: sim.skyrmion_number(),
'header': 'skx_num'}
}
self.saver = DataSaver(self, self.name + '.txt', entities=entities)
self.saver.update_entity_order()
def __init__(self, mesh, name):
self.name = name
self.mesh = mesh
self.n = mesh.n
self.n_nonzero = mesh.n
self.unit_length = mesh.unit_length
self._magnetisation = np.zeros(self.n, dtype=np.float)
# Inverse magnetisation
self._magnetisation_inv = np.zeros(self.n, dtype=np.float)
self.spin = np.ones(3 * self.n, dtype=np.float)
self._pins = np.zeros(self.n, dtype=np.int32)
self.field = np.zeros(3 * self.n, dtype=np.float)
self._skx_number = np.zeros(self.n, dtype=np.float)
self.interactions = []
# This is for old C files codes using the xperiodic variables
try:
self.xperiodic, self.yperiodic, self.zperiodic = mesh.periodicity
except ValueError:
self.xperiodic, self.yperiodic = mesh.periodicity
# To save the simulation data: ----------------------------------------
self.data_saver = DataSaver(self, name + '.txt')
self.data_saver.entities['E_total'] = {
'unit': '<J>',
'get': lambda sim: self.compute_energy(),
'header': 'E_total'
}
self.data_saver.entities['m_error'] = {
'unit': '<>',
'get': lambda sim: self.compute_spin_error(),
'header': 'm_error'
}
self.data_saver.update_entity_order()
def __init__(self, mesh, name='unnamed', integrator='sundials'):
"""Simulation object.
*Arguments*
name : the Simulation name (used for writing data files, for examples)
"""
self.t = 0
self.name = name
self.mesh = mesh
self.n = mesh.n
self.n_nonzero = mesh.n
self.unit_length = mesh.unit_length
self._alpha = np.zeros(self.n, dtype=np.float)
self._Ms = np.zeros(self.n, dtype=np.float)
self._Ms_inv = np.zeros(self.n, dtype=np.float)
self.spin = np.ones(3 * self.n, dtype=np.float)
self.spin_last = np.ones(3 * self.n, dtype=np.float)
self._pins = np.zeros(self.n, dtype=np.int32)
self.field = np.zeros(3 * self.n, dtype=np.float)
self.dm_dt = np.zeros(3 * self.n, dtype=np.float)
self._skx_number = np.zeros(self.n, dtype=np.float)
self.interactions = []
self.pin_fun = None
self.integrator_tolerances_set = False
self.step = 0
if integrator == "sundials":
self.integrator = SundialsIntegrator(self.spin, self.sundials_rhs)
elif integrator == "euler" or integrator == "rk4":
self.integrator = StepIntegrator(self.spin, self.step_rhs, integrator)
else:
raise NotImplemented("integrator must be sundials, euler or rk4")
self.saver = DataSaver(self, name + '.txt')
self.saver.entities['E_total'] = {
'unit': '<J>',
'get': lambda sim: sim.compute_energy(),
'header': 'E_total'}
self.saver.entities['m_error'] = {
'unit': '<>',
'get': lambda sim: sim.compute_spin_error(),
'header': 'm_error'}
self.saver.entities['skx_num'] = {
'unit': '<>',
'get': lambda sim: sim.skyrmion_number(),
'header': 'skx_num'}
self.saver.entities['rhs_evals'] = {
'unit': '<>',
'get': lambda sim: self.integrator.rhs_evals,
'header': 'rhs_evals'}
self.saver.entities['real_time'] = {
'unit': '<s>',
'get': lambda _: time.time(), # seconds since epoch
'header': 'real_time'}
self.saver.update_entity_order()
# This is for old C files codes using the xperiodic variables
self.xperiodic, self.yperiodic, self.zperiodic = mesh.periodicity
self.vtk = SaveVTK(self.mesh, name=name)
self.set_default_options()
def __init__(self, mesh, name='unnamed', use_jac=False):
"""Simulation object.
*Arguments*
name : the Simulation name (used for writing data files, for examples)
"""
self.t = 0
self.name = name
self.mesh = mesh
self.n = mesh.n
self.n_nonzero = mesh.n
self.unit_length = mesh.unit_length
self._alpha = np.zeros(self.n, dtype=np.float)
self._mu_s = np.zeros(self.n, dtype=np.float)
self._mu_s_inv = np.zeros(self.n, dtype=np.float)
self.spin = np.ones(3 * self.n, dtype=np.float)
self.spin_last = np.ones(3 * self.n, dtype=np.float)
self._pins = np.zeros(self.n, dtype=np.int32)
self.field = np.zeros(3 * self.n, dtype=np.float)
self.dm_dt = np.zeros(3 * self.n, dtype=np.float)
self._skx_number = np.zeros(self.n, dtype=np.float)
self.interactions = []
self.pin_fun = None
self.step = 0
self.saver = DataSaver(self, name + '.txt')
self.saver.entities['E_total'] = {
'unit': '<J>',
'get': lambda sim: sim.compute_energy(),
'header': 'E_total'
}
self.saver.entities['m_error'] = {
'unit': '<>',
'get': lambda sim: sim.compute_spin_error(),
'header': 'm_error'
}
self.saver.entities['skx_num'] = {
'unit': '<>',
'get': lambda sim: sim.skyrmion_number(),
'header': 'skx_num'
}
self.saver.update_entity_order()
# This is only for old C files using the xperiodic variable
self.xperiodic, self.yperiodic = mesh.periodicity[0], mesh.periodicity[
1]
self.vtk = SaveVTK(self.mesh, name=name)
if use_jac is not True:
self.vode = cvode.CvodeSolver(self.spin, self.sundials_rhs)
else:
self.vode = cvode.CvodeSolver(self.spin, self.sundials_rhs,
self.sundials_jtn)
self.set_default_options()
self.set_tols()
# When initialising the integrator in the self.vode call, the CVOde
# class calls the set_initial_value function (with flag_m=0), which
# initialises a new integrator and allocates memory in this process.
# Now, when we set the magnetisation, we will use the same memory
# setting this flag_m to 1, so instead of calling CVodeInit we call
# CVodeReInit. If don't, memory is allocated in every call of set_m
self.flag_m = 1
def __init__(self, mesh, name='unnamed', use_jac=False):
"""Simulation object.
*Arguments*
name : the Simulation name (used for writing data files, for examples)
"""
self.t = 0
self.name = name
self.mesh = mesh
self.n = mesh.n
self.n_nonzero = mesh.n
self.unit_length = mesh.unit_length
self._alpha = np.zeros(self.n, dtype=np.float)
self._mu_s = np.zeros(self.n, dtype=np.float)
self._mu_s_inv = np.zeros(self.n, dtype=np.float)
self.spin = np.ones(3 * self.n, dtype=np.float)
self.spin_last = np.ones(3 * self.n, dtype=np.float)
self._pins = np.zeros(self.n, dtype=np.int32)
self.field = np.zeros(3 * self.n, dtype=np.float)
self.dm_dt = np.zeros(3 * self.n, dtype=np.float)
self._skx_number = np.zeros(self.n, dtype=np.float)
self.interactions = []
self.pin_fun = None
self.step = 0
self.saver = DataSaver(self, name + '.txt')
self.saver.entities['E_total'] = {
'unit': '<J>',
'get': lambda sim: sim.compute_energy(),
'header': 'E_total'
}
self.saver.entities['m_error'] = {
'unit': '<>',
'get': lambda sim: sim.compute_spin_error(),
'header': 'm_error'
}
self.saver.entities['skx_num'] = {
'unit': '<>',
'get': lambda sim: sim.skyrmion_number(),
'header': 'skx_num'
}
self.saver.update_entity_order()
# This is only for old C files using the xperiodic variable
self.xperiodic, self.yperiodic = mesh.periodicity[0], mesh.periodicity[
1]
self.vtk = SaveVTK(self.mesh, name=name)
if use_jac is not True:
self.vode = cvode.CvodeSolver(self.spin, self.sundials_rhs)
else:
self.vode = cvode.CvodeSolver(self.spin, self.sundials_rhs,
self.sundials_jtn)
self.set_default_options()
self.set_tols()
