def setup_class(cls):
TestBase.setup_class()
cls.ctx, cls.expt, cls.protocol = cls.make_experiment_fixture()
print("Importing example field data: {}".format(EXAMPLE_FIELD_DATA_CSV))
import_csv(cls.ctx,
container_uri=str(cls.expt.getURI().toString()),
protocol_uri=str(cls.protocol.getURI().toString()),
files=[EXAMPLE_FIELD_DATA_CSV])
def should_use_existing_sources(self):
expt2 = self.ctx.insertProject("project2","project2",DateTime()).insertExperiment("purpose", DateTime())
protocol2 = self.ctx.insertProtocol("protocol", "description")
import_csv(self.ctx,
container_uri=expt2.getURI().toString(),
protocol_uri=protocol2.getURI().toString(),
files=[EXAMPLE_FIELD_DATA_CSV])
expected_source_names = np.unique(self.df.Site)
sources = self.ctx.getTopLevelSources()
assert_equals(len(expected_source_names), len(list(iterable(sources))))
def should_use_existing_site_epoch_when_present(self):
expt2 = self.ctx.insertProject("project2","project2",DateTime()).insertExperiment("purpose", DateTime())
protocol2 = self.ctx.insertProtocol("protocol", "description")
import_csv(self.ctx,
container_uri=expt2.getURI().toString(),
protocol_uri=protocol2.getURI().toString(),
files=[EXAMPLE_FIELD_DATA_CSV])
import_csv(self.ctx,
container_uri=expt2.getURI().toString(),
protocol_uri=protocol2.getURI().toString(),
files=[EXAMPLE_FIELD_DATA_CSV])
self.check_epoch_per_site(expt2)
def import_wrapper(ctx,
container=None,
protocol=None,
files=None,
timezone=None,
header_rows=None,
date_column=None,
measurement_column=None,
**args):
return import_csv(ctx,
container_uri=container,
protocol_uri=protocol,
files=files,
timezone=timezone,
csv_header_row=header_rows,
date_column=date_column,
first_measurement_column=measurement_column)
def import_wrapper(ctx,
container=None,
protocol=None,
files=None,
timezone=None,
header_rows=None,
date_column=None,
measurement_column=None,
**args):
return import_csv(ctx,
container_uri=container,
protocol_uri=protocol,
files=files,
timezone=timezone,
csv_header_row=header_rows,
date_column=date_column,
first_measurement_column=measurement_column)