def calculateThreshold(image, roi, method):
if roi != None:
bounds = roi.getBounds()
stack = image.getStack()
newstack = ImageStack(bounds.width, bounds.height)
for i in xrange(1, stack.getSize() + 1):
ip = stack.getProcessor(i).duplicate()
ip.fillOutside(roi)
ip.setRoi(roi)
c = ip.crop()
newstack.addSlice(str(i), c)
imp = ImagePlus("ThresholdImage", newstack)
else:
imp = image
thresholder = Auto_Threshold()
result = thresholder.exec(imp, method, False, False, True, False, False, True)
return result
def getThreshold(self, imp, method): thresholder = Auto_Threshold() duplicator = Duplicator() tmp = duplicator.run(imp) return thresholder.exec(tmp, method, False, False, True, False, False, True)
