def runTrackerArguments_fillDefaults(options):
coreJsonDb = fp.getCoreFileName(options.jsonDbFile);
if (options.logFile is None):
options.logFile = fp.getFileNameParts(options.jsonDbFile)\
.getFilePathWithTransformation(lambda x: "log_"+x, extension=".txt");
if (options.jobName is None):
options.jobName = coreJsonDb;
def __init__(self, val, argumentName, sep="+"):
import fileProcessing as fp
super(ArrOfFileNamesArgument,
self).__init__(val,
argumentName,
sep,
toStringFunc=lambda x: fp.getCoreFileName(x))
def transform(self):
import fileProcessing as fp
return self.argNamePrefix() + fp.getCoreFileName(self.val)
raise Exception("Please set environment variable UTIL_SCRIPTS_DIR");
sys.path.insert(0,scriptsDir);
import pathSetter;
import fileProcessing as fp;
import util;
import argparse;
def writeFileAndEmailWhenDone(args):
fileHandle = fp.getFileHandle(args.shPath, 'w');
fileHandle.write(" ".join(args.args));
fileHandle.close();
os.system("bash "+args.shPath);
util.sendEmail(args.email, '*****@*****.**', "Done "+args.shPath, "");
if (args.dontRm == False):
os.system("rm "+args.shPath);
if __name__ == "__main__":
parser = argparse.ArgumentParser(description="Generate a shell script that is then launched and an email is sent when done");
parser.add_argument('--shPath', help="The path of the .sh file. Defaults to temp.sh");
parser.add_argument('--email', default='*****@*****.**');
parser.add_argument('args', nargs=argparse.REMAINDER, help="The command that you are actuall submitting through the shell script");
parser.add_argument('--dontRm', action='store_true', help='Wont remove file when done');
args = parser.parse_args();
if (len(args.args) < 1):
parser.print_help();
sys.exit(1);
if (args.shPath is None):
args.shPath = fp.getCoreFileName(args.args[0])+".shTempFile";
writeFileAndEmailWhenDone(args);
