def test_get_sample_gate_events(self):
wsp_path = "examples/data/8_color_data_set/8_color_ICS_simple.wsp"
sample_grp = 'DEN'
sample_id = '101_DEN084Y5_15_E01_008_clean.fcs'
gate_name = 'CD3+'
fks = Session(copy.deepcopy(test_samples_8c_full_set))
fks.import_flowjo_workspace(wsp_path, ignore_missing_files=True)
fks.analyze_samples(sample_grp, sample_id)
sample_comp = fks.get_sample_comp_matrices(sample_grp, sample_id)[0]
sample_xform = transforms.LogicleTransform('my_logicle',
param_t=262144.0,
param_w=1.0,
param_m=4.418539922,
param_a=0.0)
df_gated_events = fks.get_gate_events(sample_grp,
sample_id,
gate_name,
matrix=sample_comp,
transform=sample_xform)
self.assertIsInstance(df_gated_events, pd.DataFrame)
self.assertEqual(len(df_gated_events), 133670)
def test_get_sample_comp_matrices(self):
wsp_path = "examples/data/8_color_data_set/8_color_ICS_simple.wsp"
sample_grp = 'DEN'
sample_id = '101_DEN084Y5_15_E01_008_clean.fcs'
fks = Session(copy.deepcopy(test_samples_8c_full_set))
fks.import_flowjo_workspace(wsp_path, ignore_missing_files=True)
comp_matrices = fks.get_sample_comp_matrices(sample_grp, sample_id)
self.assertEqual(len(comp_matrices), 1)
for cm in comp_matrices:
self.assertIsInstance(cm, Matrix)
