def main(path, config, reprep=False):
if reprep:
culled_dataset = prep_dataset.main(path, config)
dataset = culled_dataset
else:
culled_dataset_filename = os.path.join(path, config.culled_datasets_path, config.culled_dataset_name)
culled_dataset = fad.load(culled_dataset_filename)
dataset = culled_dataset
if 0:
raw_dataset_name = os.path.join(path, config.raw_datasets_path, config.raw_dataset_name)
raw_dataset = fad.load(raw_dataset_name)
prep_dataset.prep_data(raw_dataset, path, config)
dataset = raw_dataset
figure_path = os.path.join(path, config.figure_path)
plot_heatmaps.pdf_book(config, dataset, save_figure_path=os.path.join(figure_path, 'heatmaps/') )
#plot_spagetti.main(config, dataset, save_figure_path=os.path.join(figure_path, 'spagetti/') )
#plot_activity_histograms.main(dataset, save_figure_path=os.path.join(figure_path, 'activity/') )
#plot_distance_histograms.plot_distance_histogram(config, dataset, save_figure_path='')
plot_landing_histogram.plot_landing_histogram(config, dataset)
sachead.main(config, dataset)
def main(path, config):
if 0:
culled_dataset = prep_dataset.main(path, config)
dataset = culled_dataset
if 1:
raw_dataset_name = os.path.join(path, config.raw_datasets_path, config.raw_dataset_name)
raw_dataset = fad.load(raw_dataset_name)
prep_dataset.prep_data(raw_dataset, path, config)
dataset = raw_dataset
figure_path = os.path.join(path, config.figure_path)
plot_heatmaps.main(dataset, save_figure_path=os.path.join(figure_path, 'heatmaps/') )
plot_spagetti.main(dataset, save_figure_path=os.path.join(figure_path, 'spagetti/') )
plot_activity_histograms.main(dataset, save_figure_path=os.path.join(figure_path, 'activity/') )
ax.set_xticklabels(xticklabels)
ax.set_ylabel('occurences, normalized')
path = config.path
figure_path = os.path.join(config.path, config.figure_path)
save_figure_path=os.path.join(figure_path, 'odor_traces/')
figure_path = os.path.join(path, config.figure_path)
save_figure_path = os.path.join(figure_path, 'odor_traces/')
fig_name_with_path = os.path.join(save_figure_path, savename)
print 'SAVING TO: ', fig_name_with_path
fig.savefig(fig_name_with_path, format='pdf')
if __name__ == '__main__':
parser = OptionParser()
parser.add_option("--path", type="str", dest="path", default='',
help="path to data folder, where you have a configuration file")
(options, args) = parser.parse_args()
path = options.path
analysis_configuration = imp.load_source('analysis_configuration', os.path.join(path, 'analysis_configuration.py'))
config = analysis_configuration.Config(path)
culled_dataset_filename = os.path.join(path, config.culled_datasets_path, config.culled_dataset_name)
dataset = fad.load(culled_dataset_filename)
plot_orientation_airheading_groundheading(dataset, config, visual_stimulus='none')
