def test_make_pandas_transformer_transform(transformer, kwargs, sk_path,
input_csv):
"""Test wrapped transformer has the initial transform functionality.
Args:
transformer: wrapped transformer class name
kwargs: key word arguments for transformer initialization
sk_path: path to the module containing the wrapped sklearn
transformer
input_csv: dataset to test on
"""
import pandas as pd
import numpy as np
from scipy.sparse import issparse
sk_transformer = get_transformer(transformer, source_lib=sk_path)(**kwargs)
transformer = get_transformer(transformer)(**kwargs)
df = pd.read_csv(input_csv)
crim_df = df[["crim"]]
transformer.fit(crim_df)
sk_transformer.fit(crim_df)
sk_out = sk_transformer.transform(crim_df)
if issparse(sk_out):
sk_out = sk_out.toarray()
assert np.array_equal(transformer.transform(crim_df).values, sk_out)
def pick_transformer(self, X, y=None, **fit_params):
"""Get best intent transformer for a given column.
Note:
This function also sets the cache_manager
Args:
X: input DataFrame
y: input labels
**fit_params: fit_params
Returns:
Best intent transformer.
"""
column = X.columns[0]
override_key = "_".join([Override.INTENT, column])
if override_key in self.cache_manager[AcceptedKey.OVERRIDE]:
intent_override = self.cache_manager[
AcceptedKey.OVERRIDE][override_key]
intent_class = get_transformer(intent_override)
else:
intent_class = get_transformer(self._resolve_intent(X, y=y))
return intent_class()
def test_make_pandas_transformer_init(transformer, sk_path):
"""Test pandas_wrap has initial transformer init functionality.
Should be able to accept any parameters from the sklearn transformer and
initialize on the wrapped instance. They should also posses the is_wrapped
method.
Args:
transformer: wrapped transformer
sk_path: path to the module containing the wrapped sklearn
transformer
"""
sk_transformer = get_transformer(transformer, source_lib=sk_path)()
params = sk_transformer.get_params()
transformer = get_transformer(transformer)(**params)
def transformer(self, value):
"""Validate transformer initialization.
Args:
value (object): The selected transformer that SmartTransformer
should use.
Raises:
ValueError: If input is neither a valid foreshadow wrapped
transformer, scikit-learn Pipeline, scikit-learn FeatureUnion,
nor None.
"""
if isinstance(value, str):
value = get_transformer(value)(**self.kwargs)
self.unset_resolve()
# Check transformer type
is_trans = is_transformer(value)
trans_wrapped = (is_wrapped(value)
if getattr(self, "check_wrapped", True) else True)
# True by default passes this check if we don't want it.
is_pipe = isinstance(value, Pipeline)
is_none = value is None
checks = [is_trans, is_pipe, is_none, trans_wrapped]
# Check the transformer inheritance status
if not any(checks):
logging.error("transformer: {} failed checks: {}".format(
value, checks))
raise ValueError(
"{} is neither a scikit-learn Pipeline, FeatureUnion, a "
"wrapped foreshadow transformer, nor None.".format(value))
self._transformer = value
def test_make_pandas_transformer_meta(transformer, expected_path):
"""Test that the wrapped transformer has proper metadata.
Args:
transformer: wrapped transformer class name
expected_path: path to the initial transformer
Returns:
"""
expected_class = get_transformer(transformer, source_lib=expected_path)
transformer = get_transformer(transformer)()
assert isinstance(transformer, expected_class) # should remain a subclass
assert type(transformer).__name__ == expected_class.__name__
assert transformer.__doc__ == expected_class.__doc__
def get_config(self):
"""Resolve a config instance.
Returns:
dict: A resolved version of the system configuration that merges \
system, user, and local configuration setups.
"""
local_path = os.path.abspath("")
local_config = load_config(local_path)
# Expand the dictionaries in order of precedence
resolved_strs = {
**self.system_config,
**self.user_config,
**local_config,
}
resolved_hash = hash(json.dumps(resolved_strs, sort_keys=True))
if resolved_hash in self._cfg_list:
return self._cfg_list[resolved_hash]
resolved = {}
# key is cleaner, resolver, or intent
# all individual steps are converted to classes
for key, data in resolved_strs.items():
if not len(data):
resolved[key] = data
elif isinstance(data, list):
resolved[key] = [
get_transformer(transformer) for transformer in data
]
elif isinstance(data, dict):
resolved[key] = {
step: [
get_transformer(transformer)
for transformer in transformer_list
]
for step, transformer_list in data.items()
}
self._cfg_list[resolved_hash] = resolved
return resolved
def _summarize(self, X_df):
summary = {}
if self.y_var:
intent = "Label"
data = standard_col_summary(X_df)
summary[X_df.columns[0]] = {"intent": intent, "data": data}
else:
for k in X_df.columns.values.tolist():
intent = self.cache_manager[AcceptedKey.INTENT, k]
data = get_transformer(intent).column_summary(X_df[[k]])
summary[k] = {"intent": intent, "data": data}
return summary
def test_make_pandas_transformer_fit(transformer, input_csv):
"""Test pandas_wrap has initial transformer fit functionality.
Args:
transformer: wrapped transformer class name
input_csv: dataset to test on
"""
import pandas as pd
transformer = get_transformer(transformer)()
df = pd.read_csv(input_csv)
assert transformer.fit(df) == transformer