def create_labels():
minimal_labels = {
"Position": {
"Cy3": {
"attach_id": 1,
"linker_length": 20,
"linker_width": 5,
"dye_radius1": 8,
"dye_radius2": 3,
"dye_radius3": 3,
"use_LabelLib": False,
},
"Cy5": {
"attach_id": 288,
"linker_length": 20,
"linker_width": 5,
"dye_radius1": 9.5,
"dye_radius2": 3,
"dye_radius3": 3,
"use_LabelLib": False,
},
},
"Distance": {
"Cy3-Cy5": {
"R0": 54
}
}
}
cloud.check_labels(minimal_labels, verbose=False)
return minimal_labels
def test_AV1(complete_labels, monkeypatch):
monkeypatch.setitem(MINIMAL_LABELS["Position"]["Cy3"], "simulation_type", "AV1")
cloud.check_labels(MINIMAL_LABELS, verbose=False)
assert complete_labels["Position"]["Cy3"]["dye_radius2"] == 0
def test_unrecognized_key(monkeypatch):
monkeypatch.setitem(MINIMAL_LABELS["Position"]["Cy3"], "unknown_key", "some_value")
with pytest.raises(KeyError):
cloud.check_labels(MINIMAL_LABELS, verbose=False)
def test_attachID_wrongtype(monkeypatch):
monkeypatch.setitem(MINIMAL_LABELS["Position"]["Cy3"], "linker_length", "1")
with pytest.raises(TypeError):
cloud.check_labels(MINIMAL_LABELS, verbose=False)
def test_missing_item(label_dict, missing_item, error, monkeypatch):
monkeypatch.delitem(label_dict, missing_item)
with pytest.raises(error):
cloud.check_labels(MINIMAL_LABELS, verbose=False)
def complete_labels():
cloud.check_labels(MINIMAL_LABELS, verbose=False)
return MINIMAL_LABELS