def test_02(self):
""" Tests whether files of input format Chimera prettyPrint can
be parsed"""
fusions = ReadChimeraPrettyPrint("tests/data/test_Readers.TestReadChimeraPrettyPrint.test_02.txt","test")
self.assertEqual(fusions[0].acceptor_donor_direction , AD_DIRECTION_FORWARD )
self.assertEqual(fusions[1].acceptor_donor_direction , AD_DIRECTION_REVERSE )
self.assertEqual(fusions[2].acceptor_donor_direction , AD_DIRECTION_REVERSE )
self.assertEqual(fusions[3].acceptor_donor_direction , AD_DIRECTION_FORWARD )
def test_01(self):
""" Tests whether files of input format Chimera prettyPrint can
be parsed"""
fusions = ReadChimeraPrettyPrint("tests/data/test_Readers.TestReadChimeraPrettyPrint.test_01.txt","test")
self.assertEqual(len(fusions) , 2)
self.assertEqual(fusions[0].left_break_position , 8407 )
self.assertEqual(fusions[0].right_break_position , 14006 )
self.assertEqual(fusions[0].left_strand , STRAND_REVERSE )
self.assertEqual(fusions[0].right_strand , STRAND_FORWARD )
self.assertEqual(fusions[1].left_break_position , 5320 )
self.assertEqual(fusions[1].right_break_position , 11706 )
self.assertEqual(fusions[1].left_strand , STRAND_FORWARD )
self.assertEqual(fusions[1].right_strand , STRAND_REVERSE )