DoArchive = True
if not DoArchive:
# If we removed some files it doesn't make sense to archive again
print
print '\tWe already ran DarkDeleter.py on experiment', \
ExperimentID[SelectedExperiment]
print '\tWe thus do not archive it again.'
print '\tTake a look at', os.path.join(
os.path.dirname(Experiment[SelectedExperiment])[len(
StartingFolder):], ExperimentID[SelectedExperiment] +
'.archive.log'), 'for more info'
print
else:
# Archive it!
logfile = functions.myLogger(
os.path.dirname(Experiment[SelectedExperiment]),
ExperimentID[SelectedExperiment] + '.archive.log')
logfile.info('Archival log file for Experiment ID %s, archived on '
'%s', ExperimentID[SelectedExperiment],
time.strftime('%d.%m.%Y at %H:%M:%S'))
logfile.info('\nMade with "%s" at Revision %s', os.path.basename(
__file__), functions.get_git_hash())
logfile.info(80 * '-')
# Tar the selected folder
TarCommand = ['tar', '-czf', Experiment[SelectedExperiment] +
'.tar.gz', '-C',
os.path.dirname(Experiment[SelectedExperiment]),
os.path.basename(Experiment[SelectedExperiment])]
print 'Packing', ExperimentID[SelectedExperiment]
logfile.info('Packing the original files with')
logfile.info('---')
SelectionImage.shape[0],
facecolor='red', alpha=overlayalpha))
tellme(' '.join(['click left (green) if you want to do the '
'evaluation,\nclick right (red) if you want to skip '
'experiment', ExperimentID[Counter]]))
# If the user clicks in the red, we do the analysis, if in the green
# we 'continue' to the next experiment ID
if plt.ginput(1, timeout=-1)[0][0] > SelectionImage.shape[1] / 2:
print 'We skip', ExperimentID[Counter]
plt.close('all')
continue
else:
print 'We evaluate', ExperimentID[Counter]
else:
wediditalready = False
logfile = functions.myLogger(os.path.dirname(Experiment[Counter]),
ExperimentID[Counter] + '.resolution.log')
logfile.info(
'Log file for Experiment %s, Resolution analsyis performed on %s',
ExperimentID[Counter], time.strftime('%d.%m.%Y at %H:%M:%S'))
logfile.info('\nMade with "%s" at Revision %s', os.path.basename(__file__),
git_hash)
logfile.info(80 * '-')
# either read original or contrast-stretched corrected image
OriginalImage = plt.imread(os.path.join(
os.path.dirname(Experiment[Counter]), ExperimentID[Counter] +
'.image.corrected.png'))
StretchedImage = plt.imread(os.path.join(
os.path.dirname(Experiment[Counter]), ExperimentID[Counter] +
'.image.corrected.stretched.png'))
logfile.info('Loading corrected and contrast stretched corrected image')
logfile.info(os.path.join(os.path.dirname(Experiment[Counter]),
