Python set_datatypes_registryの例

コード例 #1

ファイル: db_shell.py プロジェクト: BiocrucesBizkaia/galaxy-mikel

sys.path.insert(
    1,
    os.path.abspath(os.path.join(os.path.dirname(__file__), os.pardir, 'lib')))

from galaxy.datatypes.registry import Registry
from galaxy.model import *  # noqa
from galaxy.model import set_datatypes_registry  # More explicit than `*` import
from galaxy.model.mapping import init
from galaxy.model.orm.scripts import get_config

if sys.version_info > (3, ):
    long = int

registry = Registry()
registry.load_datatypes()
set_datatypes_registry(registry)
db_url = get_config(sys.argv)['db_url']
sa_session = init('/tmp/', db_url).context


# Helper function for debugging sqlalchemy queries...
# http://stackoverflow.com/questions/5631078/sqlalchemy-print-the-actual-query
def printquery(statement, bind=None):
    """
    Print a query, with values filled in
    for debugging purposes *only*
    for security, you should always separate queries from their values
    please also note that this function is quite slow
    """
    import sqlalchemy.orm
    if isinstance(statement, sqlalchemy.orm.Query):

コード例 #2

 def init_datatypes(self):
     datatypes_registry = registry.Registry()
     datatypes_registry.load_datatypes()
     model.set_datatypes_registry(datatypes_registry)
     self.datatypes_registry = datatypes_registry

コード例 #3

ファイル: galaxy_mock.py プロジェクト: AAFC-MBB/galaxy-1

 def init_datatypes( self ):
     datatypes_registry = registry.Registry()
     datatypes_registry.load_datatypes()
     model.set_datatypes_registry( datatypes_registry )

コード例 #4

 def init_datatypes(self):
     datatypes_registry = registry.Registry()
     datatypes_registry.load_datatypes()
     model.set_datatypes_registry(datatypes_registry)
     datatypes_registry.set_external_metadata_tool = MockSetExternalTool()
     self.datatypes_registry = datatypes_registry

コード例 #5

def datatypes_registry():
    r = registry.Registry()
    r.load_datatypes()
    set_datatypes_registry(r)

コード例 #6

ファイル: db_shell.py プロジェクト: ImmPortDB/immport-galaxy

from sqlalchemy.sql import label  # noqa

sys.path.insert(1, os.path.abspath(os.path.join(os.path.dirname(__file__), os.pardir, 'lib')))

from galaxy.datatypes.registry import Registry
from galaxy.model import *  # noqa
from galaxy.model import set_datatypes_registry  # More explicit than `*` import
from galaxy.model.mapping import init
from galaxy.model.orm.scripts import get_config

if sys.version_info > (3,):
    long = int

registry = Registry()
registry.load_datatypes()
set_datatypes_registry(registry)
db_url = get_config(sys.argv)['db_url']
sa_session = init('/tmp/', db_url).context


# Helper function for debugging sqlalchemy queries...
# http://stackoverflow.com/questions/5631078/sqlalchemy-print-the-actual-query
def printquery(statement, bind=None):
    """
    Print a query, with values filled in
    for debugging purposes *only*
    for security, you should always separate queries from their values
    please also note that this function is quite slow
    """
    import sqlalchemy.orm
    if isinstance(statement, sqlalchemy.orm.Query):