def test_tool_requirements():
tool_requirements_ab = ToolRequirements([REQUIREMENT_A, REQUIREMENT_B])
tool_requirements_ab_dup = ToolRequirements([REQUIREMENT_A, REQUIREMENT_B])
tool_requirements_b = ToolRequirements([REQUIREMENT_A])
assert tool_requirements_ab == ToolRequirements(
[REQUIREMENT_B, REQUIREMENT_A])
assert tool_requirements_ab == ToolRequirements(
[REQUIREMENT_B, REQUIREMENT_A, REQUIREMENT_A])
assert tool_requirements_ab != tool_requirements_b
assert len({tool_requirements_ab, tool_requirements_ab_dup}) == 1
def get_dependencies(builder: "HasReqsHints") -> ToolRequirements:
(software_requirement, _) = builder.get_requirement("SoftwareRequirement")
dependencies = [] # type: List[ToolRequirement]
if software_requirement and software_requirement.get("packages"):
packages = cast(
MutableSequence[MutableMapping[str, Union[str,
MutableSequence[str]]]],
software_requirement.get("packages"),
)
for package in packages:
version = package.get("version", None)
if isinstance(version, MutableSequence):
if version:
version = version[0]
else:
version = None
specs = [{"uri": s} for s in package.get("specs", [])]
dependencies.append(
ToolRequirement.from_dict(
dict(
name=cast(str, package["package"]).split("#")[-1],
version=version,
type="package",
specs=specs,
)))
return ToolRequirements.from_list(dependencies)
def __init__(self, requirements=None, installed_tool_dependencies=None):
requirements = requirements or ToolRequirements()
if installed_tool_dependencies is None:
installed_tool_dependencies = []
self.requirements = requirements
# tool shed installed tool dependencies...
self.installed_tool_dependencies = installed_tool_dependencies
def from_dict(as_dict):
if as_dict is None:
return None
requirements_dicts = as_dict.get('requirements', [])
requirements = ToolRequirements.from_list(requirements_dicts)
installed_tool_dependencies_dicts = as_dict.get(
'installed_tool_dependencies', [])
installed_tool_dependencies = map(
DependenciesDescription._toolshed_install_dependency_from_dict,
installed_tool_dependencies_dicts)
return DependenciesDescription(
requirements=requirements,
installed_tool_dependencies=installed_tool_dependencies)
def test_shell_commands_built():
# Test that dependency manager builds valid shell commands for a list of
# requirements.
with __test_base_path() as base_path:
dm = __dependency_manager_for_base_path(default_base_path=base_path)
__setup_galaxy_package_dep(base_path,
TEST_REPO_NAME,
TEST_VERSION,
contents="export FOO=\"bar\"")
mock_requirements = ToolRequirements([{
'type': 'package',
'version': TEST_VERSION,
'name': TEST_REPO_NAME
}])
commands = dm.dependency_shell_commands(mock_requirements)
__assert_foo_exported(commands)
