def _integrateFullOrbit(vxvv,pot,t,method,dt):
"""
NAME:
_integrateFullOrbit
PURPOSE:
integrate an orbit in a Phi(R,z,phi) potential
INPUT:
vxvv - array with the initial conditions stacked like
[R,vR,vT,z,vz,phi]; vR outward!
pot - Potential instance
t - list of times at which to output (0 has to be in this!)
method - 'odeint' or 'leapfrog'
dt - if set, force the integrator to use this basic stepsize; must be an integer divisor of output stepsize
OUTPUT:
[:,5] array of [R,vR,vT,z,vz,phi] at each t
HISTORY:
2010-08-01 - Written - Bovy (NYU)
"""
#First check that the potential has C
if '_c' in method:
if not _check_c(pot):
if ('leapfrog' in method or 'symplec' in method):
method= 'leapfrog'
else:
method= 'odeint'
warnings.warn("Cannot use C integration because some of the potentials are not implemented in C (using %s instead)" % (method), galpyWarning)
if method.lower() == 'leapfrog':
#go to the rectangular frame
this_vxvv= nu.array([vxvv[0]*nu.cos(vxvv[5]),
vxvv[0]*nu.sin(vxvv[5]),
vxvv[3],
vxvv[1]*nu.cos(vxvv[5])-vxvv[2]*nu.sin(vxvv[5]),
vxvv[2]*nu.cos(vxvv[5])+vxvv[1]*nu.sin(vxvv[5]),
vxvv[4]])
#integrate
out= symplecticode.leapfrog(_rectForce,this_vxvv,
t,args=(pot,),rtol=10.**-8)
#go back to the cylindrical frame
R= nu.sqrt(out[:,0]**2.+out[:,1]**2.)
phi= nu.arccos(out[:,0]/R)
phi[(out[:,1] < 0.)]= 2.*nu.pi-phi[(out[:,1] < 0.)]
vR= out[:,3]*nu.cos(phi)+out[:,4]*nu.sin(phi)
vT= out[:,4]*nu.cos(phi)-out[:,3]*nu.sin(phi)
out[:,3]= out[:,2]
out[:,4]= out[:,5]
out[:,0]= R
out[:,1]= vR
out[:,2]= vT
out[:,5]= phi
elif ext_loaded and \
(method.lower() == 'leapfrog_c' or method.lower() == 'rk4_c' \
or method.lower() == 'rk6_c' or method.lower() == 'symplec4_c' \
or method.lower() == 'symplec6_c' or method.lower() == 'dopr54_c'):
warnings.warn("Using C implementation to integrate orbits",
galpyWarningVerbose)
#go to the rectangular frame
this_vxvv= nu.array([vxvv[0]*nu.cos(vxvv[5]),
vxvv[0]*nu.sin(vxvv[5]),
vxvv[3],
vxvv[1]*nu.cos(vxvv[5])-vxvv[2]*nu.sin(vxvv[5]),
vxvv[2]*nu.cos(vxvv[5])+vxvv[1]*nu.sin(vxvv[5]),
vxvv[4]])
#integrate
tmp_out, msg= integrateFullOrbit_c(pot,this_vxvv,
t,method,dt=dt)
#go back to the cylindrical frame
R= nu.sqrt(tmp_out[:,0]**2.+tmp_out[:,1]**2.)
phi= nu.arccos(tmp_out[:,0]/R)
phi[(tmp_out[:,1] < 0.)]= 2.*nu.pi-phi[(tmp_out[:,1] < 0.)]
vR= tmp_out[:,3]*nu.cos(phi)+tmp_out[:,4]*nu.sin(phi)
vT= tmp_out[:,4]*nu.cos(phi)-tmp_out[:,3]*nu.sin(phi)
out= nu.zeros((len(t),6))
out[:,0]= R
out[:,1]= vR
out[:,2]= vT
out[:,5]= phi
out[:,3]= tmp_out[:,2]
out[:,4]= tmp_out[:,5]
elif method.lower() == 'odeint' or not ext_loaded:
vphi= vxvv[2]/vxvv[0]
init= [vxvv[0],vxvv[1],vxvv[5],vphi,vxvv[3],vxvv[4]]
intOut= integrate.odeint(_FullEOM,init,t,args=(pot,),
rtol=10.**-8.)#,mxstep=100000000)
out= nu.zeros((len(t),6))
out[:,0]= intOut[:,0]
out[:,1]= intOut[:,1]
out[:,2]= out[:,0]*intOut[:,3]
out[:,3]= intOut[:,4]
out[:,4]= intOut[:,5]
out[:,5]= intOut[:,2]
#post-process to remove negative radii
neg_radii= (out[:,0] < 0.)
out[neg_radii,0]= -out[neg_radii,0]
out[neg_radii,5]+= m.pi
return out
def _integrateFullOrbit(vxvv,pot,t,method):
"""
NAME:
_integrateFullOrbit
PURPOSE:
integrate an orbit in a Phi(R,z,phi) potential
INPUT:
vxvv - array with the initial conditions stacked like
[R,vR,vT,z,vz,phi]; vR outward!
pot - Potential instance
t - list of times at which to output (0 has to be in this!)
method - 'odeint' or 'leapfrog'
OUTPUT:
[:,5] array of [R,vR,vT,z,vz,phi] at each t
HISTORY:
2010-08-01 - Written - Bovy (NYU)
"""
#First check that the potential has C
if '_c' in method:
if isinstance(pot,list):
allHasC= nu.prod([p.hasC for p in pot])
else:
allHasC= pot.hasC
if not allHasC and ('leapfrog' in method or 'symplec' in method):
method= 'leapfrog'
elif not allHasC:
method= 'odeint'
if method.lower() == 'leapfrog':
#go to the rectangular frame
this_vxvv= nu.array([vxvv[0]*nu.cos(vxvv[5]),
vxvv[0]*nu.sin(vxvv[5]),
vxvv[3],
vxvv[1]*nu.cos(vxvv[5])-vxvv[2]*nu.sin(vxvv[5]),
vxvv[2]*nu.cos(vxvv[5])+vxvv[1]*nu.sin(vxvv[5]),
vxvv[4]])
#integrate
out= symplecticode.leapfrog(_rectForce,this_vxvv,
t,args=(pot,),rtol=10.**-8)
#go back to the cylindrical frame
R= nu.sqrt(out[:,0]**2.+out[:,1]**2.)
phi= nu.arccos(out[:,0]/R)
phi[(out[:,1] < 0.)]= 2.*nu.pi-phi[(out[:,1] < 0.)]
vR= out[:,3]*nu.cos(phi)+out[:,4]*nu.sin(phi)
vT= out[:,4]*nu.cos(phi)-out[:,3]*nu.sin(phi)
out[:,3]= out[:,2]
out[:,4]= out[:,5]
out[:,0]= R
out[:,1]= vR
out[:,2]= vT
out[:,5]= phi
elif ext_loaded and \
(method.lower() == 'leapfrog_c' or method.lower() == 'rk4_c' \
or method.lower() == 'rk6_c' or method.lower() == 'symplec4_c' \
or method.lower() == 'symplec6_c' or method.lower() == 'dopr54_c'):
warnings.warn("Using C implementation to integrate orbits",
galpyWarning)
#go to the rectangular frame
this_vxvv= nu.array([vxvv[0]*nu.cos(vxvv[5]),
vxvv[0]*nu.sin(vxvv[5]),
vxvv[3],
vxvv[1]*nu.cos(vxvv[5])-vxvv[2]*nu.sin(vxvv[5]),
vxvv[2]*nu.cos(vxvv[5])+vxvv[1]*nu.sin(vxvv[5]),
vxvv[4]])
#integrate
tmp_out, msg= integrateFullOrbit_c(pot,this_vxvv,
t,method)
#go back to the cylindrical frame
R= nu.sqrt(tmp_out[:,0]**2.+tmp_out[:,1]**2.)
phi= nu.arccos(tmp_out[:,0]/R)
phi[(tmp_out[:,1] < 0.)]= 2.*nu.pi-phi[(tmp_out[:,1] < 0.)]
vR= tmp_out[:,3]*nu.cos(phi)+tmp_out[:,4]*nu.sin(phi)
vT= tmp_out[:,4]*nu.cos(phi)-tmp_out[:,3]*nu.sin(phi)
out= nu.zeros((len(t),6))
out[:,0]= R
out[:,1]= vR
out[:,2]= vT
out[:,5]= phi
out[:,3]= tmp_out[:,2]
out[:,4]= tmp_out[:,5]
elif method.lower() == 'odeint' or not ext_loaded:
vphi= vxvv[2]/vxvv[0]
init= [vxvv[0],vxvv[1],vxvv[5],vphi,vxvv[3],vxvv[4]]
intOut= integrate.odeint(_FullEOM,init,t,args=(pot,),
rtol=10.**-8.)#,mxstep=100000000)
out= nu.zeros((len(t),6))
out[:,0]= intOut[:,0]
out[:,1]= intOut[:,1]
out[:,2]= out[:,0]*intOut[:,3]
out[:,3]= intOut[:,4]
out[:,4]= intOut[:,5]
out[:,5]= intOut[:,2]
#post-process to remove negative radii
neg_radii= (out[:,0] < 0.)
out[neg_radii,0]= -out[neg_radii,0]
out[neg_radii,5]+= m.pi
return out
def _integrateFullOrbit(vxvv, pot, t, method):
"""
NAME:
_integrateFullOrbit
PURPOSE:
integrate an orbit in a Phi(R,z,phi) potential
INPUT:
vxvv - array with the initial conditions stacked like
[R,vR,vT,z,vz,phi]; vR outward!
pot - Potential instance
t - list of times at which to output (0 has to be in this!)
method - 'odeint' or 'leapfrog'
OUTPUT:
[:,5] array of [R,vR,vT,z,vz,phi] at each t
HISTORY:
2010-08-01 - Written - Bovy (NYU)
"""
if method.lower() == 'leapfrog':
#go to the rectangular frame
this_vxvv = nu.array([
vxvv[0] * nu.cos(vxvv[5]), vxvv[0] * nu.sin(vxvv[5]), vxvv[3],
vxvv[1] * nu.cos(vxvv[5]) - vxvv[2] * nu.sin(vxvv[5]),
vxvv[2] * nu.cos(vxvv[5]) + vxvv[1] * nu.sin(vxvv[5]), vxvv[4]
])
#integrate
out = symplecticode.leapfrog(_rectForce,
this_vxvv,
t,
args=(pot, ),
rtol=10.**-8)
#go back to the cylindrical frame
R = nu.sqrt(out[:, 0]**2. + out[:, 1]**2.)
phi = nu.arccos(out[:, 0] / R)
phi[(out[:, 1] < 0.)] = 2. * nu.pi - phi[(out[:, 1] < 0.)]
vR = out[:, 3] * nu.cos(phi) + out[:, 4] * nu.sin(phi)
vT = out[:, 4] * nu.cos(phi) - out[:, 3] * nu.sin(phi)
out[:, 3] = out[:, 2]
out[:, 4] = out[:, 5]
out[:, 0] = R
out[:, 1] = vR
out[:, 2] = vT
out[:, 5] = phi
elif method.lower() == 'leapfrog_c' or method.lower() == 'rk4_c' \
or method.lower() == 'rk6_c' or method.lower() == 'symplec4_c' \
or method.lower() == 'symplec6_c' or method.lower() == 'dopr54_c':
warnings.warn("Using C implementation to integrate orbits")
#go to the rectangular frame
this_vxvv = nu.array([
vxvv[0] * nu.cos(vxvv[5]), vxvv[0] * nu.sin(vxvv[5]), vxvv[3],
vxvv[1] * nu.cos(vxvv[5]) - vxvv[2] * nu.sin(vxvv[5]),
vxvv[2] * nu.cos(vxvv[5]) + vxvv[1] * nu.sin(vxvv[5]), vxvv[4]
])
#integrate
tmp_out, msg = integrateFullOrbit_c(pot, this_vxvv, t, method)
#go back to the cylindrical frame
R = nu.sqrt(tmp_out[:, 0]**2. + tmp_out[:, 1]**2.)
phi = nu.arccos(tmp_out[:, 0] / R)
phi[(tmp_out[:, 1] < 0.)] = 2. * nu.pi - phi[(tmp_out[:, 1] < 0.)]
vR = tmp_out[:, 3] * nu.cos(phi) + tmp_out[:, 4] * nu.sin(phi)
vT = tmp_out[:, 4] * nu.cos(phi) - tmp_out[:, 3] * nu.sin(phi)
out = nu.zeros((len(t), 6))
out[:, 0] = R
out[:, 1] = vR
out[:, 2] = vT
out[:, 5] = phi
out[:, 3] = tmp_out[:, 2]
out[:, 4] = tmp_out[:, 5]
elif method.lower() == 'odeint':
vphi = vxvv[2] / vxvv[0]
init = [vxvv[0], vxvv[1], vxvv[5], vphi, vxvv[3], vxvv[4]]
intOut = integrate.odeint(_FullEOM,
init,
t,
args=(pot, ),
rtol=10.**-8.) #,mxstep=100000000)
out = nu.zeros((len(t), 6))
out[:, 0] = intOut[:, 0]
out[:, 1] = intOut[:, 1]
out[:, 2] = out[:, 0] * intOut[:, 3]
out[:, 3] = intOut[:, 4]
out[:, 4] = intOut[:, 5]
out[:, 5] = intOut[:, 2]
#post-process to remove negative radii
neg_radii = (out[:, 0] < 0.)
out[neg_radii, 0] = -out[neg_radii, 0]
out[neg_radii, 5] += m.pi
return out