def analyserscan_v1(*args):
starttime = time.ctime()
if PRINTTIME: print "=== Scan started: " + starttime
newargs = []
i = 0
while i < len(args):
arg = args[i]
newargs.append(arg)
i = i + 1
if isinstance(arg, RegionScannable):
controller = Finder.find("SequenceFileObserver")
xmldir = InterfaceProvider.getPathConstructor(
).createFromDefaultProperty() + "xml" + os.sep
filename = xmldir + args[i]
if (OsUtil.isWindows()):
FilenameUtil.setPrefix("D:")
filename = FilenameUtil.convertSeparator(filename)
controller.update(controller, SequenceFileChangeEvent(filename))
sleep(1.0)
while (InterfaceProvider.getScanStatusHolder().getScanStatus() ==
JythonStatus.PAUSED):
sleep(1.0)
newargs.append(RegionPositionProvider(filename))
#newargs.append( arg ) # to read the actual position
i = i + 1
scan(newargs)
if PRINTTIME:
print("=== Scan ended: " + time.ctime() +
". Elapsed time: %.0f seconds" % (time.time() - starttime))
def analyserpathscan_v1(scannables, path, *args):
'''
perform a single region analyser data collection at each point on the specified path,
and produce a single scan data files recording scannables' poistions and metadata, and
analyser data for the active region defined in your sequence definition file under ew4001 node.
implementation details:
This function pre-process sequence file to set up Region Position Provider for scannable
'regions' ready for data collection using analyser 'ew4001', then delegate the scan
process to 'pathscan'.
'''
newargs = []
i = 0
while i < len(args):
arg = args[i]
newargs.append(arg)
i = i + 1
if isinstance(arg, RegionScannable):
controller = Finder.find("SequenceFileObserver")
xmldir = InterfaceProvider.getPathConstructor(
).createFromDefaultProperty() + "xml" + os.sep
filename = xmldir + args[i]
if (OsUtil.isWindows()):
FilenameUtil.setPrefix("D:")
filename = FilenameUtil.convertSeparator(filename)
controller.update(controller, SequenceFileChangeEvent(filename))
sleep(1.0)
while (InterfaceProvider.getScanStatusHolder().getScanStatus() ==
JythonStatus.PAUSED):
sleep(1.0)
newargs.append(RegionPositionProvider(filename))
#newargs.append( arg ) # to read the actual position
i = i + 1
pathscan(scannables, path, newargs)
def isScanRunning():
return InterfaceProvider.getScanStatusHolder().getScanStatus(
) != JythonStatus.IDLE
def isScanRunning(): return InterfaceProvider.getScanStatusHolder().getScanStatus() != JythonStatus.IDLE
