class ModelTest(unittest.TestCase):
def setUp(self):
cwd = os.getcwd()
if os.path.split(cwd)[1] == "tests":
BASEDIR = os.path.split(cwd)[0]
elif os.path.split(cwd)[1] == "gdi":
BASEDIR = cwd
else:
print "ERROR: Model test cannot find home dir -- cwd", cwd
self.projectID = "utest"
self.homeDir = os.path.join(BASEDIR, "gdiqt4", "projects", self.projectID)
self.model = Model()
self.model.initialize(self.projectID, self.homeDir)
self.testFilePathName = os.path.join(BASEDIR, "tests", "example_data", "simple_mmu_list.csv")
self.fileName = "simple_mmu_list.csv"
self.assertTrue(os.path.isfile(self.testFilePathName))
def testLoadFile(self):
## test that events and channels may be retrieved
self.model.load_files([self.testFilePathName])
fName = re.sub("\s+", "_", os.path.split(self.fileName)[-1])
fName = re.sub("\.csv|\.txt", "", fName)
geneList = self.model.get_genes(fName)
self.assertEqual(len(geneList), 7)
def testGetAllGeneLists(self):
allGeneLists = get_gene_list_names(self.homeDir)
self.assertEqual(len(allGeneLists), 1)
def setUp(self):
cwd = os.getcwd()
if os.path.split(cwd)[1] == "tests":
BASEDIR = os.path.split(cwd)[0]
elif os.path.split(cwd)[1] == "gdi":
BASEDIR = cwd
else:
print "ERROR: Model test cannot find home dir -- cwd", cwd
self.projectID = "utest"
self.homeDir = os.path.join(BASEDIR, "gdiqt4", "projects", self.projectID)
self.model = Model()
self.model.initialize(self.projectID, self.homeDir)
self.testFilePathName = os.path.join(BASEDIR, "tests", "example_data", "simple_mmu_list.csv")
self.fileName = "simple_mmu_list.csv"
self.assertTrue(os.path.isfile(self.testFilePathName))
