def hdpa():
"""Create gene fixture for HDPA."""
params = {
"match_type":
MatchType.NO_MATCH,
"label":
"Hodgkin disease, susceptibility, pseudoautosomal",
"concept_id":
"ncbigene:50829",
"symbol":
"HDPA",
"aliases": [],
"xrefs": [],
"previous_symbols": [],
"associated_with": ["omim:300221"],
"symbol_status":
None,
"location_annotations": [],
"strand":
None,
"locations": [{
"id": "ga4gh:CL.kl9HXvnUCE6Z1ktXibt83NBdXvxnT2RA",
"chr": "X",
"end": "p22.32",
"start": "pter",
"species_id": "taxonomy:9606",
"type": "ChromosomeLocation"
}],
"gene_type":
"unknown"
}
return Gene(**params)
def cecr():
"""Create a CECR gene fixture."""
params = {
"match_type":
MatchType.NO_MATCH,
"label":
"cat eye syndrome chromosome region",
"concept_id":
"hgnc:1838",
"symbol":
"CECR",
"location_annotations": [],
"strand":
None,
"locations": [{
"id": "ga4gh:CL.AgASk5sB6LCeaB6rcqOwmrm16ise3pof",
"chr": "22",
"end": "q11",
"start": "pter",
"species_id": "taxonomy:9606",
"type": "ChromosomeLocation"
}],
"previous_symbols": [],
"aliases": [],
"symbol_status":
"approved",
"xrefs": ["ncbigene:1055"],
"associated_with": [],
"gene_type":
"region"
}
return Gene(**params)
def gene():
"""Create a valid gene test fixture."""
return Gene(
match_type=100,
concept_id='hgnc:1097',
symbol='BRAF'
)
def mhb():
"""Create gene fixture for MHB."""
params = {
"match_type":
MatchType.NO_MATCH,
"label":
"myopathy, hyaline body, autosomal recessive",
"concept_id":
"ncbigene:619511",
"symbol":
"MHB",
"aliases": [],
"xrefs": [],
"previous_symbols": [],
"associated_with": ["omim:255160"],
"symbol_status":
None,
"location_annotations": [],
"strand":
None,
"locations": [{
"id": "ga4gh:CL.6vlmdqdXYxSAGsJI9no7kLN5iLKpvr5X",
"chr": "3",
"end": "p21.32",
"start": "p22.2",
"species_id": "taxonomy:9606",
"type": "ChromosomeLocation"
}],
"gene_type":
"unknown"
}
return Gene(**params)
def trl_cag2_1():
"""Create a TRL-CAG2-1 gene fixture."""
params = {
"match_type":
MatchType.NO_MATCH,
"label":
"tRNA-Leu (anticodon CAG) 2-1",
"concept_id":
"hgnc:34692",
"symbol":
"TRL-CAG2-1",
"location_annotations": [],
"strand":
None,
"locations": [{
"id": "ga4gh:CL.aZ5aYHaC3GhDWgwhKkAcd9GBvkEo034v",
"chr": "16",
"end": "q13",
"start": "q21",
"species_id": "taxonomy:9606",
"type": "ChromosomeLocation"
}],
"previous_symbols": ["TRNAL13"],
"aliases": ["tRNA-Leu-CAG-2-1"],
"symbol_status":
"approved",
"xrefs": ["ncbigene:100189130"],
"associated_with": ["ena.embl:HG983896"],
"gene_type":
"RNA, transfer"
}
return Gene(**params)
def cecr():
"""Create a CECR gene fixture."""
params = {
'match_type':
MatchType.NO_MATCH,
'label':
'cat eye syndrome chromosome region',
'concept_id':
'hgnc:1838',
'symbol':
'CECR',
'location_annotations': [],
'strand':
None,
'locations': [{
'_id': 'ga4gh:VCL.-hT6Cp6B32GmZTD8BXh1xf6SJeLM1uN7',
'chr': '22',
'interval': {
'end': 'q11',
'start': 'pter',
'type': 'CytobandInterval'
},
'species_id': 'taxonomy:9606',
'type': 'ChromosomeLocation'
}],
'previous_symbols': [],
'aliases': [],
'symbol_status':
'approved',
'xrefs': ['ncbigene:1055'],
'associated_with': []
}
return Gene(**params)
def trl_cag2_1():
"""Create a TRL-CAG2-1 gene fixture."""
params = {
'match_type':
MatchType.NO_MATCH,
'label':
'tRNA-Leu (anticodon CAG) 2-1',
'concept_id':
'hgnc:34692',
'symbol':
'TRL-CAG2-1',
'location_annotations': [],
'strand':
None,
'locations': [{
'_id': 'ga4gh:VCL.r_iXu-FjXuJjmeNhmDEputf6tgjXRQIr',
'chr': '16',
'interval': {
'end': 'q13',
'start': 'q21',
'type': 'CytobandInterval'
},
'species_id': 'taxonomy:9606',
'type': 'ChromosomeLocation'
}],
'previous_symbols': ['TRNAL13'],
'aliases': ['tRNA-Leu-CAG-2-1'],
'symbol_status':
'approved',
'xrefs': ['ncbigene:100189130'],
'associated_with': ['ena.embl:HG983896']
}
return Gene(**params)
def ddx11l1():
"""Create a DDX11L1 fixutre."""
params = {
'match_type': MatchType.NO_MATCH,
'concept_id': 'ensembl:ENSG00000223972',
'symbol': 'DDX11L1',
'label': 'DEAD/H-box helicase 11 like 1 (pseudogene)',
'previous_symbols': [],
'aliases': [],
'xrefs': ['hgnc:37102'],
'symbol_status': None,
'location_annotations': [],
'locations': [
{
'_id': 'ga4gh:VSL.naD2_Q0JKCEKkGj8FvMzerePKnNNcF5N',
'interval': {
'end': {'value': 14409, 'type': 'Number'},
'start': {'value': 11868, 'type': 'Number'},
'type': 'SequenceInterval'
},
'sequence_id': 'ga4gh:SQ.Ya6Rs7DHhDeg7YaOSg1EoNi3U_nQ9SvO',
'type': 'SequenceLocation'
}
],
'strand': '+',
'associated_with': []
}
return Gene(**params)
def u6():
"""Create a U6 test fixture."""
params = {
'match_type': MatchType.NO_MATCH,
'concept_id': 'ensembl:ENSG00000278757',
'symbol': 'U6',
'label': 'U6 spliceosomal RNA',
'previous_symbols': [],
'aliases': [],
'xrefs': [],
'symbol_status': None,
'location_annotations': [],
'locations': [
{
'_id': 'ga4gh:VSL.mtPBK609IiOFy0gztyTnEGdWM_k_e85C',
'interval': {
'end': {'value': 516479, 'type': 'Number'},
'start': {'value': 516375, 'type': 'Number'},
'type': 'SequenceInterval'
},
'sequence_id': 'ga4gh:SQ.Ya6Rs7DHhDeg7YaOSg1EoNi3U_nQ9SvO',
'type': 'SequenceLocation'
}
],
'strand': '-',
'associated_with': ['rfam:RF00026']
}
return Gene(**params)
def spg37():
"""Create gene fixture for SPG37."""
params = {
'match_type':
MatchType.NO_MATCH,
'label':
'spastic paraplegia 37 (autosomal dominant)',
'concept_id':
'ncbigene:100049159',
'symbol':
'SPG37',
'aliases': [],
'xrefs': [],
'previous_symbols': [],
'associated_with': ['omim:611945'],
'symbol_status':
None,
'location_annotations': [],
'strand':
None,
'locations': [{
'_id': 'ga4gh:VCL.P5jAIluXneqHZMV9FBEQ2ZqOpO-8fqbP',
'chr': '8',
'interval': {
'end': 'q13.3',
'start': 'p21.2',
'type': 'CytobandInterval'
},
'species_id': 'taxonomy:9606',
'type': 'ChromosomeLocation'
}]
}
return Gene(**params)
def hsa_mir_1253():
"""Create a AC091057.5 test fixture."""
params = {
'match_type': MatchType.NO_MATCH,
'concept_id': 'ensembl:ENSG00000272920',
'symbol': 'hsa-mir-1253',
'label': 'hsa-mir-1253',
'previous_symbols': [],
'aliases': [],
'xrefs': [],
'symbol_status': None,
'location_annotations': [],
'locations': [
{
'_id': 'ga4gh:VSL.goBvYPYef2mQildG6AiiRNVhTo-g4-1E',
'interval': {
'end': {'value': 2748182, 'type': 'Number'},
'start': {'value': 2748077, 'type': 'Number'},
'type': 'SequenceInterval'
},
'sequence_id': 'ga4gh:SQ.dLZ15tNO1Ur0IcGjwc3Sdi_0A6Yf4zm7',
'type': 'SequenceLocation'
}
],
'strand': '+',
'associated_with': ['mirbase:MI0006387']
}
return Gene(**params)
def hdpa():
"""Create gene fixture for HDPA."""
params = {
'match_type':
MatchType.NO_MATCH,
'label':
'Hodgkin disease, susceptibility, pseudoautosomal',
'concept_id':
'ncbigene:50829',
'symbol':
'HDPA',
'aliases': [],
'xrefs': [],
'previous_symbols': [],
'associated_with': ['omim:300221'],
'symbol_status':
None,
'location_annotations': [],
'strand':
None,
'locations': [{
'_id': 'ga4gh:VCL.faRHNO_VJMssbjYQ628mfdRgLqg9qK2b',
'chr': 'X',
'interval': {
'end': 'p22.32',
'start': 'pter',
'type': 'CytobandInterval'
},
'species_id': 'taxonomy:9606',
'type': 'ChromosomeLocation'
}]
}
return Gene(**params)
def mhb():
"""Create gene fixture for MHB."""
params = {
'match_type':
MatchType.NO_MATCH,
'label':
'myopathy, hyaline body, autosomal recessive',
'concept_id':
'ncbigene:619511',
'symbol':
'MHB',
'aliases': [],
'xrefs': [],
'previous_symbols': [],
'associated_with': ['omim:255160'],
'symbol_status':
None,
'location_annotations': [],
'strand':
None,
'locations': [{
'_id': 'ga4gh:VCL.2WDJu032Gc_9BN4qiNELb577XomiZv8z',
'chr': '3',
'interval': {
'end': 'p21.32',
'start': 'p22.2',
'type': 'CytobandInterval'
},
'species_id': 'taxonomy:9606',
'type': 'ChromosomeLocation'
}]
}
return Gene(**params)
def glc1b():
"""Create gene fixture for GLC1B."""
params = {
'match_type':
MatchType.NO_MATCH,
'label':
'glaucoma 1, open angle, B (adult-onset)',
'concept_id':
'ncbigene:2722',
'symbol':
'GLC1B',
'aliases': [],
'xrefs': [],
'previous_symbols': [],
'associated_with': ['omim:606689'],
'symbol_status':
None,
'location_annotations': [],
'strand':
None,
'locations': [{
'_id': 'ga4gh:VCL.HStPIl_6UkNQmbjZW1TeUmHFMptbIj6t',
'chr': '2',
'interval': {
'end': 'q13',
'start': 'cen',
'type': 'CytobandInterval'
},
'species_id': 'taxonomy:9606',
'type': 'ChromosomeLocation'
}]
}
return Gene(**params)
def loc106783576():
"""Create gene fixture for ."""
params = {
'match_type':
MatchType.NO_MATCH,
'label':
'nonconserved acetylation island sequence 68 enhancer',
'concept_id':
'ncbigene:106783576',
'symbol':
'LOC106783576',
'aliases': [],
'xrefs': [],
'previous_symbols': [],
'associated_with': [],
'symbol_status':
None,
'location_annotations': [],
'strand':
None,
'locations': [{
'_id': 'ga4gh:VCL.RFN35KQMhqzhmo4QP7AxKAzlPtnh7slL',
'chr': '10',
'interval': {
'end': 'cen',
'start': 'pter',
'type': 'CytobandInterval'
},
'species_id': 'taxonomy:9606',
'type': 'ChromosomeLocation'
}]
}
return Gene(**params)
def spg37():
"""Create gene fixture for SPG37."""
params = {
"match_type":
MatchType.NO_MATCH,
"label":
"spastic paraplegia 37 (autosomal dominant)",
"concept_id":
"ncbigene:100049159",
"symbol":
"SPG37",
"aliases": [],
"xrefs": [],
"previous_symbols": [],
"associated_with": ["omim:611945"],
"symbol_status":
None,
"location_annotations": [],
"strand":
None,
"locations": [{
"id": "ga4gh:CL.XWbwTwmJ95KD-aCuXfJcD8cNIvXbiXRh",
"chr": "8",
"end": "q13.3",
"start": "p21.2",
"species_id": "taxonomy:9606",
"type": "ChromosomeLocation"
}],
"gene_type":
"unknown"
}
return Gene(**params)
def CH17_340M24_3():
"""Create a CH17-340M24.3 test fixture."""
params = {
'match_type': MatchType.NO_MATCH,
'concept_id': 'ensembl:ENSG00000197180',
'symbol': 'CH17-340M24.3',
'label': 'uncharacterized protein BC009467',
'previous_symbols': [],
'aliases': [],
'xrefs': ['ncbigene:158960'],
'symbol_status': None,
'location_annotations': [],
'locations': [
{
'_id': 'ga4gh:VSL.EJaq2KK3bIftDcyP1YAmJLb08JbBAmAn',
'interval': {
'end': {'value': 154428479, 'type': 'Number'},
'start': {'value': 154424379, 'type': 'Number'},
'type': 'SequenceInterval'
},
'sequence_id': 'ga4gh:SQ.w0WZEvgJF0zf_P4yyTzjjv9oW1z61HHP',
'type': 'SequenceLocation'
}
],
'strand': '-',
'associated_with': []
}
return Gene(**params)
def add_record(self, response: Dict[str, Dict], item: Dict,
match_type: MatchType) -> (Dict, str):
"""Add individual record (i.e. Item in DynamoDB) to response object
:param Dict[str, Dict] response: in-progress response object to return
to client
:param Dict item: Item retrieved from DynamoDB
:param MatchType match_type: match type for query
:return: Tuple containing updated response object, and string
containing name of the source of the match
"""
del item['label_and_type']
# DynamoDB Numbers get converted to Decimal
item = self._cast_location_ints(item)
item["match_type"] = match_type
gene = Gene(**item)
src_name = item['src_name']
matches = response['source_matches']
if src_name not in matches.keys():
pass
elif matches[src_name] is None:
matches[src_name] = {
'records': [gene],
'source_meta_': self.fetch_meta(src_name)
}
else:
matches[src_name]['records'].append(gene)
return response, src_name
def AC091057_5():
"""Create a AC091057.5 test fixture."""
params = {
'match_type': MatchType.NO_MATCH,
'concept_id': 'ensembl:ENSG00000284906',
'symbol': 'AC091057.5',
'label': 'Rho GTPase-activating protein 11B',
'previous_symbols': [],
'aliases': [],
'xrefs': [],
'symbol_status': None,
'location_annotations': [],
'locations': [
{
'_id': 'ga4gh:VSL.sZGLn8Ah76rP34pu8-7W73lkCwQ7XSJD',
'interval': {
'end': {'value': 30685606, 'type': 'Number'},
'start': {'value': 30624547, 'type': 'Number'},
'type': 'SequenceInterval'
},
'sequence_id': 'ga4gh:SQ.AsXvWL1-2i5U_buw6_niVIxD6zTbAuS6',
'type': 'SequenceLocation'
}
],
'strand': '+',
'associated_with': ['uniprot:Q3KRB8']
}
return Gene(**params)
def gage4():
"""Create a GAGE4 gene fixture."""
params = {
"match_type":
MatchType.NO_MATCH,
"label":
"G antigen 4",
"concept_id":
"hgnc:4101",
"symbol":
"GAGE4",
"location_annotations": ["not on reference assembly"],
"strand":
None,
"locations": [{
"id": "ga4gh:CL.6KzwrFm2WeSXqwIIiNbAu-pKQQHt2q5Q",
"chr": "X",
"end": "p11.2",
"start": "p11.4",
"species_id": "taxonomy:9606",
"type": "ChromosomeLocation"
}],
"previous_symbols": [],
"aliases": ["CT4.4"],
"symbol_status":
"approved",
"xrefs": ["ncbigene:2576"],
"associated_with": [
"refseq:NM_001474", "omim:300597", "uniprot:P0DSO3",
"ena.embl:U19145", "pubmed:7544395"
],
"gene_type":
"gene with protein product"
}
return Gene(**params)
def spry3():
"""Create a SPRY3 test fixture."""
params = {
'match_type': MatchType.NO_MATCH,
'concept_id': 'ensembl:ENSG00000168939',
'symbol': 'SPRY3',
'label': 'sprouty RTK signaling antagonist 3',
'previous_symbols': [],
'aliases': [],
'xrefs': ['hgnc:11271'],
'symbol_status': None,
'location_annotations': [],
'locations': [
{
'_id': 'ga4gh:VSL.7Jax3UNlW_EZrZ44U-R1eLe_OeCC71IR',
'interval': {
'end': {'value': 155782459, 'type': 'Number'},
'start': {'value': 155612571, 'type': 'Number'},
'type': 'SequenceInterval'
},
'sequence_id': 'ga4gh:SQ.w0WZEvgJF0zf_P4yyTzjjv9oW1z61HHP',
'type': 'SequenceLocation'
}
],
'strand': '+',
'associated_with': []
}
return Gene(**params)
def a1bg_as1():
"""Create an A1BG-AS1 gene fixture."""
params = {
"match_type":
MatchType.NO_MATCH,
"label":
"A1BG antisense RNA 1",
"concept_id":
"hgnc:37133",
"symbol":
"A1BG-AS1",
"location_annotations": [],
"strand":
None,
"locations": [{
"id": "ga4gh:CL.Rz-M5wA0_bIhQYLKi2ZPqlqW3nBPfAx5",
"chr": "19",
"end": "q13.43",
"start": "q13.43",
"species_id": "taxonomy:9606",
"type": "ChromosomeLocation"
}],
"previous_symbols": ["NCRNA00181", "A1BGAS", "A1BG-AS"],
"aliases": ["FLJ23569"],
"symbol_status":
"approved",
"associated_with": [
"vega:OTTHUMG00000183508", "ucsc:uc002qse.3", "refseq:NR_015380",
"ena.embl:BC040926", "refseq:NR_015380", "ena.embl:BC040926"
],
"xrefs": ["ensembl:ENSG00000268895", "ncbigene:503538"],
"gene_type":
"RNA, long non-coding"
}
return Gene(**params)
def tp53():
"""Create a TP53 fixture."""
params = {
'match_type': MatchType.NO_MATCH,
'concept_id': 'ensembl:ENSG00000141510',
'symbol': 'TP53',
'label': 'tumor protein p53',
'previous_symbols': [],
'aliases': [],
'xrefs': ['hgnc:11998'],
'symbol_status': None,
'location_annotations': [],
'locations': [
{
'_id': 'ga4gh:VSL.7q-vAjxSYARaPbbUjhDng2oay795NfbE',
'interval': {
'end': {'value': 7687538, 'type': 'Number'},
'start': {'value': 7661778, 'type': 'Number'},
'type': 'SequenceInterval'
},
'sequence_id': 'ga4gh:SQ.dLZ15tNO1Ur0IcGjwc3Sdi_0A6Yf4zm7',
'type': 'SequenceLocation'
}
],
'strand': '-',
'associated_with': []
}
return Gene(**params)
def mafip():
"""Create a MAFIP gene fixture."""
params = {
"match_type":
MatchType.NO_MATCH,
"label":
"MAFF interacting protein (pseudogene)",
"concept_id":
"hgnc:31102",
"symbol":
"MAFIP",
"location_annotations": ["unplaced", "14"],
"locations": [],
"strand":
None,
"previous_symbols": [],
"aliases":
["FLJ35473", "FLJ00219", "FLJ39633", "MIP", "pp5644", "TEKT4P4"],
"symbol_status":
"approved",
"xrefs": ["ensembl:ENSG00000274847", "ncbigene:727764"],
"associated_with": [
"vega:OTTHUMG00000188065", "refseq:NR_046439", "uniprot:Q8WZ33",
"ena.embl:AK074146", "ena.embl:AF289559", "pubmed:16549056",
"pubmed:15881666"
],
"gene_type":
"pseudogene"
}
return Gene(**params)
def mafip():
"""Create a MAFIP gene fixture."""
params = {
'match_type':
MatchType.NO_MATCH,
'label':
'MAFF interacting protein (pseudogene)',
'concept_id':
'hgnc:31102',
'symbol':
'MAFIP',
'location_annotations': ['unplaced', '14'],
'locations': [],
'strand':
None,
'previous_symbols': [],
'aliases':
['FLJ35473', 'FLJ00219', 'FLJ39633', 'MIP', 'pp5644', 'TEKT4P4'],
'symbol_status':
'approved',
'xrefs': ['ensembl:ENSG00000274847', 'ncbigene:727764'],
'associated_with': [
'vega:OTTHUMG00000188065', 'refseq:NR_046439', 'uniprot:Q8WZ33',
'ena.embl:AK074146', 'ena.embl:AF289559', 'pubmed:16549056',
'pubmed:15881666'
]
}
return Gene(**params)
def glc1b():
"""Create gene fixture for GLC1B."""
params = {
"match_type":
MatchType.NO_MATCH,
"label":
"glaucoma 1, open angle, B (adult-onset)",
"concept_id":
"ncbigene:2722",
"symbol":
"GLC1B",
"aliases": [],
"xrefs": [],
"previous_symbols": [],
"associated_with": ["omim:606689"],
"symbol_status":
None,
"location_annotations": [],
"strand":
None,
"locations": [{
"id": "ga4gh:CL.8D0hLCktRxyPrx4Etgabq10vEq6TtU43",
"chr": "2",
"end": "q13",
"start": "cen",
"species_id": "taxonomy:9606",
"type": "ChromosomeLocation"
}],
"gene_type":
"unknown"
}
return Gene(**params)
def rps24p5():
"""Create a RPS24P5 gene fixture."""
params = {
'match_type':
MatchType.NO_MATCH,
'label':
'ribosomal protein S24 pseudogene 5',
'concept_id':
'hgnc:36026',
'symbol':
'RPS24P5',
'location_annotations': [],
'strand':
None,
'locations': [{
'_id': 'ga4gh:VCL.dLLTOKtFTnVd3ope5gTii1Gbdj7FxSfa',
'chr': '1',
'interval': {
'end': 'q41',
'start': 'p36.13',
'type': 'CytobandInterval'
},
'species_id': 'taxonomy:9606',
'type': 'ChromosomeLocation'
}],
'previous_symbols': [],
'aliases': [],
'symbol_status':
'approved',
'xrefs': ['ncbigene:100271094'],
'associated_with': ['refseq:NG_011274', 'pubmed:19123937']
}
return Gene(**params)
def rps24p5():
"""Create a RPS24P5 gene fixture."""
params = {
"match_type":
MatchType.NO_MATCH,
"label":
"ribosomal protein S24 pseudogene 5",
"concept_id":
"hgnc:36026",
"symbol":
"RPS24P5",
"location_annotations": [],
"strand":
None,
"locations": [{
"id": "ga4gh:CL.Ri0ddtMpe6DGzrC9_QGbL35gYAtU2bh_",
"chr": "1",
"end": "q41",
"start": "p36.13",
"species_id": "taxonomy:9606",
"type": "ChromosomeLocation"
}],
"previous_symbols": [],
"aliases": [],
"symbol_status":
"approved",
"xrefs": ["ncbigene:100271094"],
"associated_with": ["refseq:NG_011274", "pubmed:19123937"],
"gene_type":
"pseudogene"
}
return Gene(**params)
def loc106783576():
"""Create gene fixture for ."""
params = {
"match_type":
MatchType.NO_MATCH,
"label":
"nonconserved acetylation island sequence 68 enhancer",
"concept_id":
"ncbigene:106783576",
"symbol":
"LOC106783576",
"aliases": [],
"xrefs": [],
"previous_symbols": [],
"associated_with": [],
"symbol_status":
None,
"location_annotations": [],
"strand":
None,
"locations": [{
"id": "ga4gh:CL.YYGQrLtmKwKgp38asAkHT8AydAidnui8",
"chr": "10",
"end": "cen",
"start": "pter",
"species_id": "taxonomy:9606",
"type": "ChromosomeLocation"
}],
"gene_type":
"biological-region"
}
return Gene(**params)
def prkrap1():
"""Create gene fixture for PRKRAP1."""
params = {
"match_type":
MatchType.NO_MATCH,
"label":
"protein activator of interferon induced protein kinase "
"EIF2AK2 pseudogene 1",
"concept_id":
"ncbigene:731716",
"symbol":
"PRKRAP1",
"aliases": [],
"xrefs": ["hgnc:33447"],
"previous_symbols": ["LOC100289695"],
"associated_with": [],
"symbol_status":
None,
"location_annotations": ["alternate reference locus"],
"strand":
"+",
"locations": [{
"id": "ga4gh:CL.FYt7UkCHZVLpkYe7zhNdMk1K6lxl_k7I",
"chr": "6",
"end": "p21.3",
"start": "p21.3",
"species_id": "taxonomy:9606",
"type": "ChromosomeLocation"
}, {
"id": "ga4gh:SL.4rniEdEGTHBg9ZkvZLEVPR_MSBUlU2ih",
"end": {
"value": 3941874,
"type": "Number"
},
"start": {
"value": 3940269,
"type": "Number"
},
"sequence_id": "ga4gh:SQ.MjujHSAsgNWRTX4w3ysM7b5OVhZpdXu1",
"type": "SequenceLocation"
}, {
"id": "ga4gh:SL.qlH29_Ijp2JDyb29kxyCrtLOBa0NNx9j",
"end": {
"value": 3932085,
"type": "Number"
},
"start": {
"value": 3930480,
"type": "Number"
},
"sequence_id": "ga4gh:SQ.Q8IworEhpLeXwpz1CHM7C3luysh-ltx-",
"type": "SequenceLocation"
}],
"gene_type":
"pseudo"
}
return Gene(**params)