def checkParameterSets(self, data, allowTermination, name, isTool):
success = True
# Define the allowed attributes.
allowedAttributes = {}
allowedAttributes['id'] = (str, True, True, 'id')
allowedAttributes['description'] = (str, True, True, 'description')
allowedAttributes['data'] = (list, True, False, None)
# Define the allowed attributes in the data section of the parameter set.
allowedDataAttributes = {}
allowedDataAttributes['id'] = (str, True, True, 'id')
allowedDataAttributes['values'] = (list, True, True, 'values')
# The parameter set definitions differ slightly between tools and pipelines. For tools, the argument is
# provided as the means of identifying the node for which the supplied values apply. For pipelines, it is
# the node within the pipeline that is supplied.
if isTool: allowedDataAttributes['argument'] = (str, True, True, 'argument')
else: allowedDataAttributes['node'] = (str, True, True, 'nodeId')
# Loop over all of the defined parameter sets.
for parameterSet in data:
# Check that the supplied structure is a dictionary.
if not methods.checkIsDictionary(parameterSet, allowTermination): return False
# Check that the node has a valid ID. This is required for help messages.
id = methods.checkForId(parameterSet, name, 'parameter sets', allowTermination, isTool)
if not id: return False
# Define a set of information to be used in help messages.
helpInfo = (name, 'parameter sets', id)
# Define a structure to hold the data.
attributes = parameterSetData()
# Check the attributes.
success, attributes = methods.checkAttributes(parameterSet, allowedAttributes, attributes, allowTermination, helpInfo)
# Loop over all of the data supplied with the parameter set and check the validity.
for dataSet in parameterSet['data']:
# Check that the supplied structure is a dictionary.
if not methods.checkIsDictionary(dataSet, allowTermination): return False
# Define a structure to hold the information for each argument.
dataAttributes = parameterSetArguments()
# Check the attributes.
success, dataAttributes = methods.checkAttributes(dataSet, allowedDataAttributes, dataAttributes, allowTermination, helpInfo)
# Append this argument to the main parameter set attributes.
attributes.data.append(dataAttributes)
# Store the parameter set data.
#TODO RROR
if attributes.id in self.sets: print('parameterSets.checkParameterSets - REPEAT', attributes.id); exit(0)
self.sets[attributes.id] = attributes
return success
def checkUniqueNodes(self, data):
# If there is not information on unique graph nodes, return.
if 'unique graph nodes' not in data: return
# Define the allowed nodes attributes.
allowedAttributes = {}
allowedAttributes['delete files'] = (bool, False, True, 'isDelete')
allowedAttributes['evaluate command'] = (dict, False, True, 'evaluateCommand')
allowedAttributes['id'] = (str, True, True, 'id')
allowedAttributes['omit from reduced plot'] = (bool, False, True, 'omitFromReducedPlot')
allowedAttributes['node id'] = (str, False, True, 'nodeId')
allowedAttributes['task'] = (str, True, True, 'task')
allowedAttributes['task argument'] = (str, False, True, 'taskArgument')
# Loop over all of the defined nodes.
for uniqueNode in data['unique graph nodes']:
# Check that the supplied structure is a dictionary.
if not methods.checkIsDictionary(uniqueNode, self.allowTermination): return
# Check that the node has a valid ID. This is required for help messages.
id = methods.checkForId(uniqueNode, self.name, 'unique graph nodes', self.allowTermination, isTool = False)
if not id: return
# Define a set of information to be used in help messages.
helpInfo = (self.name, 'unique graph nodes', id)
# Define the attributes object.
attributes = uniqueGraphNodes()
# Check the attributes conform to expectations.
self.success, attributes = methods.checkAttributes(uniqueNode, allowedAttributes, attributes, self.allowTermination, helpInfo)
# If the nodeId already exists in the attributes, a node of this name has already been seen. All
#nodes must have a unique name.
if attributes.id in self.uniqueNodeAttributes: self.errors.repeatedNodeId(helpInfo)
# Also check that the node id is not the name of a task.
if attributes.id in self.allTasks: self.errors.nodeIdIsTaskId('unique', helpInfo)
# Store the attributes.
self.uniqueNodeAttributes[attributes.id] = attributes