def test_seed(self):
sel1 = subsample_longitudinal(self.md2,
samples_per_interval=1,
start_date='2019-12-26',
seed=1)
for _ in range(self._N_TEST_ITERATIONS):
sel2 = subsample_longitudinal(self.md2,
samples_per_interval=1,
start_date='2019-12-26',
seed=1)
self.assertEqual(list(sel1.inclusion.items()),
list(sel2.inclusion.items()))
def test_interval_bounds1(self):
for _ in range(self._N_TEST_ITERATIONS):
sel = subsample_longitudinal(self.md2,
samples_per_interval=1,
start_date='2019-12-26')
exp_int1_dates = [
'2020-01-02', '2020-01-03', '2020-01-04', '2020-01-05',
'2020-01-06', '2020-01-07', '2020-01-08'
]
exp_int2_dates = [
'2020-01-09', '2020-01-10', '2020-01-11', '2020-01-12',
'2020-01-13', '2020-01-14', '2020-01-15'
]
exp_int3_dates = ['2020-01-16', '2020-01-17']
exp_int4_dates = ['2020-02-21']
exp_int5_dates = ['2020-03-15']
self.assertEqual(sel.inclusion.sum(), 5)
self.assertEqual(sel.metadata.get_column('date-md'), self.md2)
self.assertEqual(sel.label, 'subsample_longitudinal')
sampled_dates = set(self.md2.to_series()[sel.inclusion].values)
self.assertEqual(len(sampled_dates & set(exp_int1_dates)), 1)
self.assertEqual(len(sampled_dates & set(exp_int2_dates)), 1)
self.assertEqual(len(sampled_dates & set(exp_int3_dates)), 1)
self.assertEqual(len(sampled_dates & set(exp_int4_dates)), 1)
self.assertEqual(len(sampled_dates & set(exp_int5_dates)), 1)
def test_start_date_not_in_data(self):
sel = subsample_longitudinal(self.md1, start_date='2019-12-30')
self.assertEqual(sel.inclusion.sum(), 8)
self.assertEqual(sel.metadata.get_column('date-md'), self.md1)
self.assertEqual(sel.label, 'subsample_longitudinal')
self.assertFalse(np.nan in list(sel.inclusion.index))
def test_two_sample_per_interval(self):
sel = subsample_longitudinal(self.md1, samples_per_interval=2)
self.assertEqual(sel.inclusion.sum(), 8)
self.assertEqual(sel.metadata.get_column('date-md'), self.md1)
self.assertEqual(sel.label, 'subsample_longitudinal')
def test_default(self):
sel = subsample_longitudinal(self.md1)
self.assertEqual(sel.inclusion.sum(), 9)
self.assertEqual(sel.metadata.get_column('date-md'), self.md1)
self.assertEqual(sel.label, 'subsample_longitudinal')
