def left_exp_from_identity(self, tangent_vec):
"""
Riemannian exponential of a tangent vector wrt the identity associated
to the left-invariant metric.
If the method is called by a right-invariant metric, it uses the
left-invariant metric associated to the same inner-product matrix
at the identity.
"""
tangent_vec = gs.to_ndarray(tangent_vec, to_ndim=2)
tangent_vec = self.group.regularize_tangent_vec_at_identity(
tangent_vec=tangent_vec,
metric=self)
sqrt_inner_product_mat = gs.linalg.sqrtm(
self.inner_product_mat_at_identity)
mat = gs.transpose(sqrt_inner_product_mat, axes=(0, 2, 1))
n_tangent_vecs, _ = tangent_vec.shape
n_mats, _, _ = mat.shape
if n_mats == 1:
mat = gs.tile(mat, (n_tangent_vecs, 1, 1))
if n_tangent_vecs == 1:
tangent_vec = gs.tile(tangent_vec, (n_mats, 1))
exp = gs.einsum('ni,nij->nj', tangent_vec, mat)
exp = self.group.regularize(exp)
return exp
def inner_product_at_identity(self, tangent_vec_a, tangent_vec_b):
"""
Inner product matrix at the tangent space at the identity.
"""
assert self.group.point_representation in ('vector', 'matrix')
if self.group.point_representation == 'vector':
tangent_vec_a = gs.to_ndarray(tangent_vec_a, to_ndim=2)
tangent_vec_b = gs.to_ndarray(tangent_vec_b, to_ndim=2)
inner_prod = gs.einsum('ij,ijk,ik->i', tangent_vec_a,
self.inner_product_mat_at_identity,
tangent_vec_b)
inner_prod = gs.to_ndarray(inner_prod, to_ndim=2, axis=1)
elif self.group.point_representation == 'matrix':
logging.warning(
'Only the canonical inner product -Frobenius inner product-'
' is implemented for Lie groups whose elements are represented'
' by matrices.')
tangent_vec_a = gs.to_ndarray(tangent_vec_a, to_ndim=3)
tangent_vec_b = gs.to_ndarray(tangent_vec_b, to_ndim=3)
aux_prod = gs.matmul(gs.transpose(tangent_vec_a, axes=(0, 2, 1)),
tangent_vec_b)
inner_prod = gs.trace(aux_prod)
return inner_prod
def transform(self, X, y=None):
"""Project X on the principal components.
Parameters
----------
X : array-like, shape=[..., n_features]
Data, where n_samples is the number of samples
and n_features is the number of features.
y : Ignored (Compliance with scikit-learn interface)
Returns
-------
X_new : array-like, shape=[..., n_components]
Projected data.
"""
tangent_vecs = self.metric.log(X, base_point=self.base_point_fit)
if self.point_type == "matrix":
if Matrices.is_symmetric(tangent_vecs).all():
X = SymmetricMatrices.to_vector(tangent_vecs)
else:
X = gs.reshape(tangent_vecs, (len(X), -1))
else:
X = tangent_vecs
X = X - self.mean_
X_transformed = gs.matmul(X, gs.transpose(self.components_))
return X_transformed
def convert_to_planar_coordinates(self, points):
"""Convert polar coordinates to spherical one."""
coords_r, coords_theta = self.convert_to_polar_coordinates(points)
coords_x = coords_r * gs.cos(coords_theta)
coords_y = coords_r * gs.sin(coords_theta)
planar_coords = gs.transpose(gs.stack((coords_x, coords_y)))
return planar_coords
def exp(self, tangent_vec, base_point=None):
"""
Riemannian exponential of a tangent vector wrt to a base point.
"""
if base_point is None:
base_point = self.group.identity
base_point = self.group.regularize(base_point)
if base_point is self.group.identity:
return self.exp_from_identity(tangent_vec)
tangent_vec = gs.to_ndarray(tangent_vec, to_ndim=2)
n_tangent_vecs, _ = tangent_vec.shape
n_base_points, _ = base_point.shape
jacobian = self.group.jacobian_translation(
point=base_point, left_or_right=self.left_or_right)
assert jacobian.ndim == 3
inv_jacobian = gs.linalg.inv(jacobian)
inv_jacobian_transposed = gs.transpose(inv_jacobian, axes=(0, 2, 1))
tangent_vec_at_id = gs.einsum('ij,ijk->ik', tangent_vec,
inv_jacobian_transposed)
exp_from_id = self.exp_from_identity(tangent_vec_at_id)
if self.left_or_right == 'left':
exp = self.group.compose(base_point, exp_from_id)
else:
exp = self.group.compose(exp_from_id, base_point)
exp = self.group.regularize(exp)
return exp
def process_function(return_dict, ip=ip, ep=ep):
solution = solve_bvp(
bvp, bc, t_int, initialize(ip, ep), fun_jac=fun_jac)
solution_at_t = solution.sol(t)
geodesic = solution_at_t[:self.dim, :]
geod.append(gs.squeeze(gs.transpose(geodesic)))
return_dict[0] = geod
def metric_matrix(self, base_point=None):
"""Compute the inner-product matrix.
Compute the inner-product matrix of the Fisher information metric
at the tangent space at base point.
Parameters
----------
base_point : array-like, shape=[..., 2]
Base point.
Returns
-------
mat : array-like, shape=[..., 2, 2]
Inner-product matrix.
"""
if base_point is None:
raise ValueError("A base point must be given to compute the "
"metric matrix")
base_point = gs.to_ndarray(base_point, to_ndim=2)
kappa, gamma = base_point[:, 0], base_point[:, 1]
mat_diag = gs.transpose(
gs.array([gs.polygamma(1, kappa) - 1 / kappa, kappa / gamma**2]))
mat = from_vector_to_diagonal_matrix(mat_diag)
return gs.squeeze(mat)
def test_squared_dist_vectorization(self):
n_samples = self.n_samples
one_point_a = gs.array([0., 1.])
one_point_b = gs.array([2., 10.])
n_points_a = gs.array([
[2., 1.],
[-2., -4.],
[-5., 1.]])
n_points_b = gs.array([
[2., 10.],
[8., -1.],
[-3., 6.]])
result = self.metric.squared_dist(one_point_a, one_point_b)
vec = one_point_a - one_point_b
expected = gs.dot(vec, gs.transpose(vec))
self.assertAllClose(result, expected)
result = self.metric.squared_dist(n_points_a, one_point_b)
self.assertAllClose(gs.shape(result), (n_samples,))
result = self.metric.squared_dist(one_point_a, n_points_b)
self.assertAllClose(gs.shape(result), (n_samples,))
result = self.metric.squared_dist(n_points_a, n_points_b)
expected = gs.array([81., 109., 29.])
self.assertAllClose(gs.shape(result), (n_samples,))
self.assertAllClose(result, expected)
def belongs(self, point, tolerance=TOLERANCE):
"""
Check if an (n,n)-matrix is an orthogonal projector
onto a subspace of rank k.
"""
point = gs.to_ndarray(point, to_ndim=3)
n_points, n, k = point.shape
if (n, k) != (self.n, self.k):
return gs.array([[False]] * n_points)
point_transpose = gs.transpose(point, axes=(0, 2, 1))
identity = gs.to_ndarray(gs.eye(k), to_ndim=3)
identity = gs.tile(identity, (n_points, 1, 1))
diff = gs.einsum('nij,njk->nik', point_transpose, point) - identity
diff_norm = gs.linalg.norm(diff, axis=(1, 2))
belongs = gs.less_equal(diff_norm, tolerance)
belongs = gs.to_ndarray(belongs, to_ndim=1)
belongs = gs.to_ndarray(belongs, to_ndim=2, axis=1)
return belongs
raise NotImplementedError(
'The Grassmann `belongs` is not implemented.'
'It shall test whether p*=p, p^2 = p and rank(p) = k.')
def inverse(self, point):
"""
Compute the group inverse in SE(3).
Formula:
(R, t)^{-1} = (R^{-1}, R^{-1}.(-t))
:param point: 6d vector element in SE(3)
:returns inverse_point: 6d vector inverse of point
"""
rotations = self.rotations
dim_rotations = rotations.dimension
point = self.regularize(point)
n_points, _ = point.shape
rot_vec = point[:, :dim_rotations]
translation = point[:, dim_rotations:]
inverse_point = gs.zeros_like(point)
inverse_rotation = -rot_vec
inv_rot_mat = rotations.matrix_from_rotation_vector(inverse_rotation)
inverse_translation = gs.zeros((n_points, self.n))
for i in range(n_points):
inverse_translation[i] = gs.dot(-translation[i],
gs.transpose(inv_rot_mat[i]))
inverse_point[:, :dim_rotations] = inverse_rotation
inverse_point[:, dim_rotations:] = inverse_translation
inverse_point = self.regularize(inverse_point)
return inverse_point
def test_inner_product(self):
base_point = gs.array([
[1., 2., 3.],
[0., 0., 0.],
[3., 1., 1.]])
tangent_vector_1 = gs.array([
[1., 2., 3.],
[0., -10., 0.],
[30., 1., 1.]])
tangent_vector_2 = gs.array([
[1., 4., 3.],
[5., 0., 0.],
[3., 1., 1.]])
result = self.metric.inner_product(
tangent_vector_1,
tangent_vector_2,
base_point=base_point)
expected = gs.trace(
gs.matmul(
gs.transpose(tangent_vector_1),
tangent_vector_2))
self.assertAllClose(result, expected)
def left_exp_from_identity(self, tangent_vec):
"""
Compute the *left* Riemannian exponential from the identity of the
Lie group of tangent vector tangent_vec.
The left Riemannian exponential has a special role since the
left Riemannian exponential of the canonical metric parameterizes
the points.
Note: In the case where the method is called by a right-invariant
metric, it used the left-invariant metric associated to the same
inner-product at the identity.
"""
import geomstats.spd_matrices_space as spd_matrices_space
tangent_vec = gs.to_ndarray(tangent_vec, to_ndim=2)
tangent_vec = self.group.regularize_tangent_vec_at_identity(
tangent_vec=tangent_vec, metric=self)
sqrt_inner_product_mat = spd_matrices_space.sqrtm(
self.inner_product_mat_at_identity)
mat = gs.transpose(sqrt_inner_product_mat, axes=(0, 2, 1))
exp = gs.matmul(tangent_vec, mat)
exp = gs.squeeze(exp, axis=0)
exp = self.group.regularize(exp)
return exp
def random_tangent_vec_uniform(self, n_samples=1, base_point=None):
"""Define a uniform random sample of tangent vectors."""
if base_point is None:
base_point = gs.eye(self.n)
base_point = gs.to_ndarray(base_point, to_ndim=3)
n_base_points, _, _ = base_point.shape
assert n_base_points == n_samples or n_base_points == 1
if n_base_points == 1:
base_point = gs.tile(base_point, (n_samples, 1, 1))
sqrt_base_point = gs.linalg.sqrtm(base_point)
tangent_vec_at_id = (2 * gs.random.rand(n_samples,
self.n,
self.n)
- 1)
tangent_vec_at_id = (tangent_vec_at_id
+ gs.transpose(tangent_vec_at_id,
axes=(0, 2, 1)))
tangent_vec = gs.matmul(sqrt_base_point, tangent_vec_at_id)
tangent_vec = gs.matmul(tangent_vec, sqrt_base_point)
return tangent_vec
def random_uniform(self, n_samples=1):
"""Define a log-uniform random sample of SPD matrices."""
mat = 2 * gs.random.rand(n_samples, self.n, self.n) - 1
spd_mat = self.embedding_manifold.exp(
mat + gs.transpose(mat, axes=(0, 2, 1)))
return spd_mat
def test_aux_differential_square_root_velocity(self):
"""Test differential of square root velocity transform.
Check that its value at (curve, tangent_vec) coincides
with the derivative at zero of the square root velocity
transform of a path of curves starting at curve with
initial derivative tangent_vec.
"""
dim = 3
n_sampling_points = 2000
sampling_times = gs.linspace(0.0, 1.0, n_sampling_points)
curve_a = self.curve_fun_a(sampling_times)
tangent_vec = gs.transpose(
gs.tile(gs.linspace(1.0, 2.0, n_sampling_points), (dim, 1))
)
result = self.srv_metric_r3.aux_differential_square_root_velocity(
tangent_vec, curve_a
)
n_curves = 2000
times = gs.linspace(0.0, 1.0, n_curves)
path_of_curves = curve_a + gs.einsum("i,jk->ijk", times, tangent_vec)
srv_path = self.srv_metric_r3.square_root_velocity(path_of_curves)
expected = n_curves * (srv_path[1] - srv_path[0])
self.assertAllClose(result, expected, atol=1e-3, rtol=1e-3)
def make_symmetric(matrix):
"""Make a matrix fully symmetric to avoid numerical issues."""
matrix = gs.to_ndarray(matrix, to_ndim=3)
n_mats, m, n = matrix.shape
assert m == n
matrix = gs.to_ndarray(matrix, to_ndim=3)
return (matrix + gs.transpose(matrix, axes=(0, 2, 1))) / 2
def test_horizontal_geodesic(self):
"""Test horizontal geodesic.
Check that the time derivative of the geodesic is
horizontal at all time.
"""
curve_b = gs.transpose(
gs.stack(
(
gs.zeros(self.n_sampling_points),
gs.zeros(self.n_sampling_points),
gs.linspace(1.0, 0.5, self.n_sampling_points),
)
)
)
horizontal_geod_fun = self.quotient_srv_metric_r3.horizontal_geodesic(
self.curve_a, curve_b
)
n_times = 20
times = gs.linspace(0.0, 1.0, n_times)
horizontal_geod = horizontal_geod_fun(times)
velocity_vec = n_times * (horizontal_geod[1:] - horizontal_geod[:-1])
_, _, vertical_norms = self.quotient_srv_metric_r3.split_horizontal_vertical(
velocity_vec, horizontal_geod[:-1]
)
result = gs.sum(vertical_norms ** 2, axis=1) ** (1 / 2)
expected = gs.zeros(n_times - 1)
self.assertAllClose(result, expected, atol=1e-3)
def test_dist_vectorization(self):
n_samples = self.n_samples
one_point_a = gs.array([0., 1.])
one_point_b = gs.array([2., 10.])
n_points_a = gs.array([[2., 1.], [-2., -4.], [-5., 1.]])
n_points_b = gs.array([[2., 10.], [8., -1.], [-3., 6.]])
result = self.metric.dist(one_point_a, one_point_b)
vec = one_point_a - one_point_b
expected = gs.sqrt(gs.dot(vec, gs.transpose(vec)))
expected = helper.to_scalar(expected)
self.assertAllClose(result, expected)
result = self.metric.dist(n_points_a, one_point_b)
self.assertAllClose(gs.shape(result), (n_samples, 1))
result = self.metric.dist(one_point_a, n_points_b)
self.assertAllClose(gs.shape(result), (n_samples, 1))
result = self.metric.dist(n_points_a, n_points_b)
expected = gs.array([[9.], [gs.sqrt(109.)], [gs.sqrt(29.)]])
self.assertAllClose(gs.shape(result), (n_samples, 1))
self.assertAllClose(result, expected)
def tangent_natural_to_standard(self, vec, base_point):
"""Convert tangent vector from natural coordinates to standard coordinates.
The change of variable is symmetric.
Parameters
----------
base_point : array-like, shape=[..., 2]
Point of the Gamma manifold, given in natural coordinates.
vec : array-like, shape=[..., 2]
Tangent vector at base_point, given in natural coordinates.
Returns
-------
vec : array-like, shape=[..., 2]
Tangent vector at base_point, given in standard coordinates.
"""
vec = gs.to_ndarray(vec, to_ndim=2)
base_point = gs.broadcast_to(base_point, vec.shape)
n_points = base_point.shape[0]
kappa, scale = (
base_point[..., 0],
base_point[..., 1],
)
jac = gs.array([[gs.ones(n_points),
gs.zeros(n_points)], [1 / scale, -kappa / scale**2]])
jac = gs.transpose(jac, [2, 0, 1])
vec = gs.einsum("...jk,...k->...j", jac, vec)
return gs.squeeze(vec)
def random_uniform(self, n_samples=1, tol=1e-6):
"""Sample in SE(n) from the uniform distribution.
Parameters
----------
n_samples : int
Number of samples.
Optional, default: 1.
tol : unused
Returns
-------
samples : array-like, shape=[..., n + 1, n + 1]
Sample in SE(n).
"""
random_translation = self.translations.random_uniform(n_samples)
random_rotation = self.rotations.random_uniform(n_samples)
random_rotation = gs.to_ndarray(random_rotation, to_ndim=3)
random_translation = gs.to_ndarray(random_translation, to_ndim=2)
random_translation = gs.transpose(
gs.to_ndarray(random_translation, to_ndim=3, axis=1), (0, 2, 1))
random_point = gs.concatenate((random_rotation, random_translation),
axis=2)
last_line = gs.zeros((n_samples, 1, self.n + 1))
random_point = gs.concatenate((random_point, last_line), axis=1)
random_point = gs.assignment(random_point, 1, (-1, -1), axis=0)
if gs.shape(random_point)[0] == 1:
random_point = gs.squeeze(random_point, axis=0)
return random_point
def basis_representation(self, matrix_representation):
"""Calculate the coefficients of given matrix in the basis.
Compute a 1d-array that corresponds to the input matrix in the basis
representation.
Parameters
----------
matrix_representation : array-like, shape=[..., n, n]
Matrix.
Returns
-------
basis_representation : array-like, shape=[..., dim]
Representation in the basis.
"""
if self.n == 2:
return matrix_representation[..., 1, 0][..., None]
if self.n == 3:
vec = gs.stack([
matrix_representation[..., 2, 1],
matrix_representation[..., 0, 2],
matrix_representation[..., 1, 0]])
return gs.transpose(vec)
return gs.triu_to_vec(matrix_representation, k=1)
def square_root_velocity_inverse(self, srv, starting_point):
"""
Retreive a curve from its square root velocity representation
and starting point.
"""
if not isinstance(self.embedding_metric, EuclideanMetric):
raise AssertionError('The square root velocity inverse is only '
'implemented for dicretized curves embedded '
'in a Euclidean space.')
if gs.ndim(srv) != gs.ndim(starting_point):
starting_point = gs.transpose(np.tile(starting_point, (1, 1, 1)),
axes=(1, 0, 2))
srv_shape = srv.shape
srv = gs.to_ndarray(srv, to_ndim=3)
n_curves, n_sampling_points_minus_one, n_coords = srv.shape
srv = gs.reshape(srv,
(n_curves * n_sampling_points_minus_one, n_coords))
srv_norm = self.embedding_metric.norm(srv)
delta_points = 1 / n_sampling_points_minus_one * srv_norm * srv
delta_points = gs.reshape(delta_points, srv_shape)
curve = np.concatenate((starting_point, delta_points), -2)
curve = np.cumsum(curve, -2)
return curve
def inner_product_matrix(self, base_point=None):
"""
Inner product matrix at the tangent space at a base point.
"""
if self.group.point_representation == 'matrix':
raise NotImplementedError(
'inner_product_matrix not implemented for Lie groups'
' whose elements are represented as matrices.')
if base_point is None:
base_point = self.group.identity
base_point = self.group.regularize(base_point)
jacobian = self.group.jacobian_translation(
point=base_point, left_or_right=self.left_or_right)
assert jacobian.ndim == 3
inv_jacobian = gs.linalg.inv(jacobian)
inv_jacobian_transposed = gs.transpose(inv_jacobian, axes=(0, 2, 1))
inner_product_mat_at_id = self.inner_product_mat_at_identity
inner_product_mat_at_id = gs.to_ndarray(inner_product_mat_at_id,
to_ndim=3)
metric_mat = gs.matmul(inv_jacobian_transposed,
inner_product_mat_at_id)
metric_mat = gs.matmul(metric_mat, inv_jacobian)
return metric_mat
def projection(self, mat):
"""
Project a matrix on SO(n), using the Frobenius norm.
"""
# TODO(nina): projection when the point_type is not 'matrix'?
mat = gs.to_ndarray(mat, to_ndim=3)
n_mats, mat_dim_1, mat_dim_2 = mat.shape
assert mat_dim_1 == mat_dim_2 == self.n
if self.n == 3:
mat_unitary_u, diag_s, mat_unitary_v = gs.linalg.svd(mat)
rot_mat = gs.matmul(mat_unitary_u, mat_unitary_v)
mask = gs.nonzero(gs.linalg.det(rot_mat) < 0)
diag = gs.array([1, 1, -1])
new_mat_diag_s = gs.tile(gs.diag(diag), len(mask))
rot_mat[mask] = gs.matmul(
gs.matmul(mat_unitary_u[mask], new_mat_diag_s),
mat_unitary_v[mask])
else:
aux_mat = gs.matmul(gs.transpose(mat, axes=(0, 2, 1)), mat)
inv_sqrt_mat = gs.zeros_like(mat)
for i in range(n_mats):
sym_mat = aux_mat[i]
assert spd_matrices_space.is_symmetric(sym_mat)
inv_sqrt_mat[i] = gs.linalg.inv(
spd_matrices_space.sqrtm(sym_mat))
rot_mat = gs.matmul(mat, inv_sqrt_mat)
assert gs.ndim(rot_mat) == 3
return rot_mat
def log(self, point, base_point=None):
"""
Riemannian logarithm of a point wrt a base point.
"""
if base_point is None:
base_point = self.group.identity
base_point = self.group.regularize(base_point)
if base_point is self.group.identity:
return self.log_from_identity(point)
point = self.group.regularize(point)
n_points, _ = point.shape
n_base_points, _ = base_point.shape
if self.left_or_right == 'left':
point_near_id = self.group.compose(self.group.inverse(base_point),
point)
else:
point_near_id = self.group.compose(point,
self.group.inverse(base_point))
log_from_id = self.log_from_identity(point_near_id)
jacobian = self.group.jacobian_translation(
base_point, left_or_right=self.left_or_right)
log = gs.einsum('ij,ijk->ik', log_from_id,
gs.transpose(jacobian, axes=(0, 2, 1)))
assert log.ndim == 2
return log
def closest_neighbor_index(self, point, neighbors):
"""Closest neighbor of point among neighbors.
Parameters
----------
point : array-like, shape=[..., dim]
Point.
neighbors : array-like, shape=[n_neighbors, dim]
Neighbors.
Returns
-------
closest_neighbor_index : int
Index of closest neighbor.
"""
n_points = point.shape[0] if gs.ndim(point) == gs.ndim(
neighbors) else 1
n_neighbors = neighbors.shape[0]
if n_points > 1 and n_neighbors > 1:
neighbors = gs.repeat(neighbors, n_points, axis=0)
point = gs.concatenate([point for _ in range(n_neighbors)])
closest_neighbor_index = gs.argmin(
gs.transpose(
gs.reshape(self.dist(point, neighbors),
(n_neighbors, n_points)), ),
axis=1,
)
if n_points == 1:
return closest_neighbor_index[0]
return closest_neighbor_index
def grad(y_pred, y_true, metric):
"""Closed-form for the gradient of the loss function.
Parameters
----------
y_pred : array-like, shape=[..., dim]
Prediction.
y_true : array-like, shape=[..., dim]
Ground-truth.
metric : RiemannianMetric
Metric.
Returns
-------
loss_grad : array-like, shape=[...,]
Gradient of the loss.
"""
tangent_vec = metric.log(base_point=y_pred, point=y_true)
grad_vec = - 2. * tangent_vec
inner_prod_mat = metric.metric_matrix(base_point=y_pred)
is_vectorized = inner_prod_mat.ndim == 3
axes = (0, 2, 1) if is_vectorized else (1, 0)
loss_grad = gs.einsum(
'...i,...ij->...i',
grad_vec,
gs.transpose(inner_prod_mat, axes=axes))
return loss_grad
def test_inner_product_vectorization(self):
n_samples = 3
one_point_a = gs.array([[-1., 0.]])
one_point_b = gs.array([[1.0, 0.]])
n_points_a = gs.array([[-1., 0.], [1., 0.], [2., math.sqrt(3)]])
n_points_b = gs.array([[2., -math.sqrt(3)], [4.0, math.sqrt(15)],
[-4.0, math.sqrt(15)]])
result = self.metric.inner_product(one_point_a, one_point_b)
expected = gs.dot(one_point_a, gs.transpose(one_point_b))
expected -= (2 * one_point_a[:, self.time_like_dim] *
one_point_b[:, self.time_like_dim])
expected = helper.to_scalar(expected)
result_no = self.metric.inner_product(n_points_a, one_point_b)
result_on = self.metric.inner_product(one_point_a, n_points_b)
result_nn = self.metric.inner_product(n_points_a, n_points_b)
self.assertAllClose(result, expected)
self.assertAllClose(gs.shape(result_no), (n_samples, 1))
self.assertAllClose(gs.shape(result_on), (n_samples, 1))
self.assertAllClose(gs.shape(result_nn), (n_samples, 1))
with self.session():
expected = np.zeros(n_samples)
for i in range(n_samples):
expected[i] = gs.eval(gs.dot(n_points_a[i], n_points_b[i]))
expected[i] -= (2 *
gs.eval(n_points_a[i, self.time_like_dim]) *
gs.eval(n_points_b[i, self.time_like_dim]))
expected = helper.to_scalar(gs.array(expected))
self.assertAllClose(result_nn, expected)
def square_root_velocity_inverse(self, srv, starting_point):
"""Retrieve a curve from sqrt velocity rep and starting point.
Parameters
----------
srv :
starting_point :
Returns
-------
curve :
"""
if not isinstance(self.ambient_metric, EuclideanMetric):
raise AssertionError('The square root velocity inverse is only '
'implemented for dicretized curves embedded '
'in a Euclidean space.')
if gs.ndim(srv) != gs.ndim(starting_point):
starting_point = gs.transpose(
gs.tile(starting_point, (1, 1, 1)),
axes=(1, 0, 2))
srv_shape = srv.shape
srv = gs.to_ndarray(srv, to_ndim=3)
n_curves, n_sampling_points_minus_one, n_coords = srv.shape
srv = gs.reshape(srv,
(n_curves * n_sampling_points_minus_one, n_coords))
srv_norm = self.ambient_metric.norm(srv)
delta_points = gs.einsum(
'...,...i->...i', 1 / n_sampling_points_minus_one * srv_norm, srv)
delta_points = gs.reshape(delta_points, srv_shape)
curve = gs.concatenate((starting_point, delta_points), -2)
curve = gs.cumsum(curve, -2)
return curve
def group_exp(self, tangent_vec, base_point=None):
"""
Compute the group exponential at point base_point
of tangent vector tangent_vec.
"""
if base_point is None:
base_point = self.identity
base_point = self.regularize(base_point)
if base_point is self.identity:
return self.group_exp_from_identity(tangent_vec)
tangent_vec = gs.to_ndarray(tangent_vec, to_ndim=2)
jacobian = self.jacobian_translation(point=base_point,
left_or_right='left')
inv_jacobian = gs.linalg.inv(jacobian)
tangent_vec_at_id = gs.einsum(
'ij,ijk->ik', tangent_vec,
gs.transpose(inv_jacobian, axes=(0, 2, 1)))
group_exp_from_identity = self.group_exp_from_identity(
tangent_vec=tangent_vec_at_id)
group_exp = self.compose(base_point, group_exp_from_identity)
group_exp = self.regularize(group_exp)
return group_exp