def test_make_mini_otu_files(self): os.system("mkdir tmp") extension_seqs = list(skbio.io.read(self.extension_seqs, format='fasta')) _make_mini_otu_files(self.key_node, self.extension_genus_dic_few, extension_seqs) result = str(list(skbio.io.read('tmp/mini_seq_gt.fasta', format='fasta'))[0]) os.system("rm -r tmp") self.assertEqual(result, 'TTAAAAAA')
def test_make_mini_otu_files(self): os.system("mkdir tmp") extension_seqs = list( skbio.io.read(self.extension_seqs, format='fasta')) with tempfile.TemporaryDirectory() as tmp: _make_mini_otu_files(self.key_node, self.extension_genus_dic_few, extension_seqs, tmp) result = str( list(skbio.io.read(tmp + "/mini_seq_gt.fasta", format='fasta'))[0]) os.system("rm -r tmp") self.assertEqual(result, 'TTAAAAAA')
def test_make_mini_otu_files(self): os.system("mkdir tmp") extension_seqs = list(skbio.io.read(self.extension_seqs, format='fasta')) with tempfile.TemporaryDirectory() as tmp: _make_mini_otu_files(self.key_node, self.extension_genus_dic_few, extension_seqs, tmp) result = str(list(skbio.io.read(tmp + "/mini_seq_gt.fasta", format='fasta'))[0]) os.system("rm -r tmp") self.assertEqual(result, 'TTAAAAAA')
def test_make_mini_otu_files(self): os.system("mkdir tmp") self.extension_seqs = SequenceCollection.read(self.extension_seqs) result = _make_mini_otu_files(self.key_node, self.extension_genus_dic_few, self.extension_seqs) os.system("rm -r tmp") self.assertEqual(result, """>P1\nTTAAAAAA\n""")