import gl
gl.resetdefaults()
gl.meshload('BrainMesh_ICBM152.rh.mz3')
gl.meshcurv()
gl.overlayminmax(1, -1, 1)
gl.overlaycolorname(1, 'surface')
gl.overlayinvert(1, 1)
gl.overlayload('motor_4t95vol.nii.gz')
gl.overlaycolorname(2, 'kelvin')
gl.overlayminmax(2, 2, 7)
gl.overlayload('scalp.mz3')
gl.overlaycolorname(3, 'gold')
gl.shaderxray(1.0, 0.9)
gl.meshoverlayorder(1)
gl.colorbarvisible(0)
gl.shaderambientocclusion(0.05)
gl.azimuthelevation(90, 15)
gl.clipazimuthelevation(0.5, 0, 90)
import gl
gl.meshload('lh.pial')
gl.overlayload('motor_4t95vol.nii.gz')
gl.overlayminmax(gl.overlaycount(), -2, -3)
gl.overlayopacity(gl.overlaycount(), 20)
#create new overlay based on contour of motor map:
gl.contour(gl.overlaycount())
#next line: make border thicker
#gl.overlayminmax(gl.overlaycount(),0.1,0.1)
#next line: make border a gradient
#gl.overlayminmax(gl.overlaycount(),0.1,1.0)
import gl
gl.resetdefaults()
gl.azimuthelevation(70, 15)
gl.meshload('BrainMesh_ICBM152Right.mz3')
gl.overlayload('motor_4t95vol.nii.gz')
gl.overlayminmax(1, 2, 12)
gl.overlayload('motor_4t95vol.nii.gz')
gl.overlayminmax(2, -1, -2)
gl.colorbarvisible(1)
gl.overlaytransparencyonbackground(25)
gl.meshcurv()
import gl
gl.resetdefaults()
gl.meshhemisphere(1)
#gl.meshloadbilateral(1)
#gl.hemispheredistance(0.5)
gl.meshload("/Users/chris/aa/_rh.inflated")
gl.overlayload(
'fs7converted_fs5_sct2in_fwhm10_npc_cft3.1_rh_dpv_npc_fisher_cfdrp_d1_c1.mgz'
)
gl.overlayminmax(1, 2.301, 4)
gl.overlaycolor(1, 128, 255, 128, 255, 0, 255)
gl.overlayload(
'fs7converted_fs5_sct2in_fwhm10_npc_cft3.1_rh_dpv_npc_fisher_cfdrp_d1_c2.mgz'
)
gl.overlayminmax(2, 2.301, 4)
gl.overlaycolor(2, 255, 0, 255, 128, 128, 128)
gl.overlayload(
'fs7converted_fs5_sct2in_fwhm10_npc_cft3.1_rh_dpv_npc_fisher_cfdrp_d1_c3.mgz'
)
gl.overlayminmax(3, 2.301, 4)
gl.overlaycolor(3, 255, 0, 0, 128, 255, 128)
gl.overlayload(
'fs7converted_fs5_sct2in_fwhm10_npc_cft3.1_rh_dpv_npc_fisher_cfdrp_d1_c4.mgz'
)
gl.overlayminmax(4, 2.301, 4)
gl.overlaycolor(4, 0, 0, 255, 128, 255, 128)
import gl
gl.resetdefaults()
#opacity adjusts whether overlays are translucent (0)
opacity = 50
pth = '/Users/chris/Downloads/sf/'
gl.azimuthelevation(70, 15)
gl.meshload('BrainMesh_ICBM152_smoothed.mz3')
gl.overlayload(pth+'bin.thr.ACC_LR.nii.gz')
gl.overlaycolorname(1, 'Violet [r+b]')
gl.overlayminmax(1,0.5,0.5)
gl.overlayopacity(1, opacity)
gl.overlayload(pth+'bin.thr.S2_OP1_LR.nii.gz')
gl.overlaycolorname(2, 'Violet [r+b]')
gl.overlayminmax(2,0.5,0.5)
gl.overlayopacity(2, opacity)
gl.overlayload(pth+'bin.thr.INS_LR.nii.gz')
gl.overlaycolorname(3, 'Bronze-Gold')
gl.overlayminmax(3,0.5,0.5)
gl.overlayopacity(3, opacity)
gl.overlayload(pth+'bin.thr.Tha_LR.nii.gz')
gl.overlaycolorname(4, 'Blue')
gl.overlayminmax(4,0.5,0.5)
gl.overlayopacity(4, opacity)
gl.overlayload(pth+'bin.thr.S1_BA2_LR.nii.gz')
gl.overlaycolorname(5, 'Cyan [g+b]')
gl.overlayminmax(5,0.5,0.5)
gl.overlayopacity(5, opacity)
gl.overlayload(pth+'thresh_zstat1.nii.gz')
gl.overlaycolorname(6, 'Red')
gl.overlayminmax(6,0.5,0.5)
gl.overlayopacity(6, 100)
import gl
gl.resetdefaults()
gl.meshload('BrainMesh_ICBM152.lh.mz3')
gl.edgeload('LPBA40.edge')
gl.clipazimuthelevation(0.3, 0, 130)
gl.nodesize(6, 1)
gl.edgesize(3,1)
gl.nodehemisphere(-1)
gl.azimuthelevation(250, 35)
gl.edgecolor('actc',1)
gl.nodecolor('blue',1)
gl.nodethresh(1.0,1.0)
gl.edgethresh(0.5,1.0)
gl.meshcurv()
gl.overlayminmax(1,-1,1)
gl.overlaycolorname(1,'surface')
gl.overlayinvert(1,1)
gl.overlaytranslucent(1, 1)
import gl
gl.resetdefaults()
gl.meshload('BrainMesh_ICBM152.rh.mz3')
gl.overlayload('motor_4t95vol.nii.gz')
gl.overlayminmax(1,2,12)
gl.overlaycolorname(2, 'Red-Yellow')
gl.azimuthelevation(110, 15)
gl.shadername('MatCap');
gl.meshcurv()
gl.overlaytranslucent(2, 1)
