def lookforurl(username, task_id):
"""
Uses module global API client instance.
"""
activer=[username,"-c",os.getcwd()+"/credential-"+username+".pem"]
global api
api, _ = create_client_from_args(activer)
#print " Here: ",api.task_list()
# See what is in the account before we make any submissions.
#print "=== Before transfer ==="
#display_tasksummary(); print
#display_task_list(); print
#display_endpoint_list(); print
#status, reason, result = api.task(task_id)
oldstdout=sys.stdout
sys.stdout = open(os.devnull,'w')
status, reason, result = api.task(task_id)
sys.stdout = oldstdout # enable output
if result["status"] != "SUCCEEDED":
print "The process is not finished yet."
print "Its status is "+result["status"]; print
sys.exit(0)
#else:
#print "The task succeeded"
#status, reason, result = api.subtask_list(task_id)
destendpoint = []
status, reason, result = api.get("/task/%s" % task_id)
#print " ++++++++++++++++++++++++ "
#print result["source_endpoint"], result["destination_endpoint"]
#print " ++++++++++++++++++++++++ "
try:
destendpoint.append(re.split("#",result["destination_endpoint"])[1])
except:
destendpoint.append(result["destination_path"])
inurllist = []
outurllist = []
status, reason, result = api.task_successful_transfers(task_id)
for subtask in result["DATA"]:
#print " ++++++++++++++++++++++++ "
#print subtask["source_path"], subtask["destination_path"], subtask["destination_endpoint"]
#print " ++++++++++++++++++++++++ "
inurllist.append(subtask["source_path"])
outurllist.append(subtask["destination_path"])
while result["next_marker"] != [] and result["next_marker"] != None:
#print result["next_marker"]
#print "There are more pid..."
status, reason, result = api.task_successful_transfers(task_id, marker=result["next_marker"])
for subtask in result["DATA"]:
#print subtask
#print subtask["source_path"], subtask["destination_path"], subtask["destination_endpoint"]
inurllist.append(subtask["source_path"])
outurllist.append(subtask["destination_path"])
return inurllist, outurllist, destendpoint
def defineurlendpoint(username):
"""
Uses module global API client instance.
"""
activer=[username,"-c",os.getcwd()+"/credential-"+username+".pem"]
global api
api, _ = create_client_from_args(activer)
urlendpoint={}
#print; print "============= Retrieving endpoint-list =============="
status, message, data = api.endpoint_list(filter="username:"******"99")
for ep_data in data["DATA"]:
value = ep_data["canonical_name"]
key = ep_data["DATA"][0]["hostname"]
urlendpoint[key]=value
#print "============= endpoint-list retrivied =============="
return urlendpoint
def detailsoftask(username, task_id):
"""
Uses module global API client instance.
"""
activer=[username,"-c",os.getcwd()+"/credential-"+username+".pem"]
global api
global interactivity
api, _ = create_client_from_args(activer)
oldstdout=sys.stdout
sys.stdout = open(os.devnull,'w')
status, reason, result = api.task(task_id)
sys.stdout = oldstdout # enable output
if result["status"] != "SUCCEEDED":
print "The process is not finished yet: its status is "+result["status"]; print
status, reason, result = api.task_event_list(task_id)
#print "====== File info ======"
#print result
#for data in result["DATA"]:
#matchObj=re.search( r'(.*)Command(.*) .*',data["details"])
#if matchObj:
#containingfilename=matchObj.group(0)
#break
#filename=containingfilename.split()[2]
#print filename
#api.file_list(filename)
#print "====== File info end ======"; print
print "The operation has the following details:"; print
try:
data=result["DATA"][0]
except:
print "The data are not available yet. Try in a few seconds again."
sys.exit(0)
for key, value in data.iteritems():
print key, value; print
print
if not interactivity: full_exit("Done!")
else:
print "The task already succeeded"
if not interactivity: full_exit("Done!")
def canceltask(username, task_id):
"""
Uses module global API client instance.
"""
activer=[username,"-c",os.getcwd()+"/credential-"+username+".pem"]
global api
global interactivity
api, _ = create_client_from_args(activer)
oldstdout=sys.stdout
sys.stdout = open(os.devnull,'w')
status, reason, result = api.task(task_id)
sys.stdout = oldstdout # enable output
if result["status"] != "SUCCEEDED":
print "The process is not finished yet: its status is "+result["status"]; print
print "It is going to be cancelled."; print
status, reason, result = api.task_cancel(task_id)
print "The cancel operation exited with the following message from GO:"
print result["message"]; print
if not interactivity: full_exit("Done!")
else:
print "The task already succeeded"
if not interactivity: full_exit("Done!")
def globus_transfer(image_id, cfg):
packages_directory = os.path.join(os.path.expanduser("~"), ".gdclient","packages")
package_directory = os.path.join(packages_directory, image_id)
if not os.path.isdir(package_directory):
print "Cannot find image "+image_id+" for transfer; please run --package level collaboration"
return
if not cfg.config['GLOBUS']['local-folder']:
print "Cannot obtain from config file: local folder shared in GLOBUS "
return
if not cfg.config['GLOBUS']['local-endpoint']:
print "Cannot obtain from config file: GLOBUS local endpoint"
return
if not cfg.config['GLOBUS']['remote-endpoint']:
print "Cannot obtain from config file: GLOBUS remote endpoint"
return
if not cfg.config['GLOBUS']['globus-remote-folder']:
print "Cannot obtain from config file: globus folder shared in remote GLOBUS endpoint"
return
if not cfg.config['GLOBUS']['globus-local-folder']:
print "Cannot obtain from config file: globus folder shared in local GLOBUS endpoint"
return
print "Please wait. Saving image ..."
short_image_name = image_id.strip()+".tgz"
image_file = cfg.config['GLOBUS']['local-folder']+"/"+short_image_name
command = "cd "+packages_directory+";tar czf "+image_file+" "+ image_id
# print "will run: ",command
run_command(command)
source_endpoint = cfg.config['GLOBUS']['local-endpoint'] # 'globuspublish#cirlab'
source_folder= cfg.config['GLOBUS']['globus-local-folder'] # '/globuspublication_52/'
remote_endpoint = cfg.config['GLOBUS']['remote-endpoint'] # 'globuspublish#cirlab'
remote_folder= cfg.config['GLOBUS']['globus-remote-folder'] # '/globuspublication_52/'
# # command = "ssh [email protected] scp cvlaescx#test_2:/docker_image/dockeraf8db02049ae25d3e64436769411206258b3b003.tar cvlaescx#test:/home/cristian/Installs/new3.tar"
# source = "%s%s%s" %(source_endpoint,source_folder, short_image_name)
# destination = "%s%s%s" %(remote_endpoint,remote_folder, short_image_name)
# command = "ssh %[email protected] transfer -- %s %s" % (cfg.config['Default']['uname'], source, destination)
# # print "will run: ",command
# run_command(command)
# #print "USAGE: transfer [destination_endpoint:destination_folder]"
transfer_args = [cfg.config['Default']['uname'], '-g', cfg.config['Default']['goauth-token']]
TransferAPIClient, _ = create_client_from_args(transfer_args)
activate_endpoint(TransferAPIClient, source_endpoint)
activate_endpoint(TransferAPIClient, remote_endpoint)
# submit the transfer
code, message, data = TransferAPIClient.transfer_submission_id()
submission_id = data["value"]
deadline = datetime.utcnow() + timedelta(minutes=10)
t = Transfer(submission_id, source_endpoint, remote_endpoint, deadline)
source_image_name = "%s%s"%(source_folder,short_image_name)
destination_image_name = "%s%s"%(remote_folder,short_image_name)
t.add_item(source_image_name, destination_image_name)
code, reason, data = TransferAPIClient.transfer(t)
task_id = data["task_id"]
print "Submitted transfer id: ", task_id
return "globus://%s%s%s"%(remote_endpoint,remote_folder,short_image_name)
print " (%s)" % s["subject"]
else:
print
def unicode_(data):
"""
Coerce any type to unicode, assuming utf-8 encoding for strings.
"""
if isinstance(data, unicode):
return data
if isinstance(data, str):
return unicode(data, "utf-8")
else:
return unicode(data)
def display_ls(endpoint_name, path=""):
code, reason, data = api.endpoint_ls(endpoint_name, path)
# Server returns canonical path; "" maps to the users default path,
# which is typically their home directory "/~/".
path = data["path"]
print "Contents of %s on %s:" % (path, endpoint_name)
headers = "name, type, permissions, size, user, group, last_modified"
headers_list = headers.split(", ")
print headers
for f in data["DATA"]:
print ", ".join([unicode_(f[k]) for k in headers_list])
if __name__ == '__main__':
api, _ = create_client_from_args()
tutorial()
The credential passed as the third argument is what is used to activate the
endpoint, and may be the same or different from the credential used to
authenticate to the API (passed with -k/-c).
The endpoint name may contain a # which is a shell comment, so be sure to
quote the endpoint name.
"""
import sys
from globusonline.transfer.api_client import create_client_from_args
from globusonline.transfer.api_client import x509_proxy
if __name__ == '__main__':
api, args = create_client_from_args()
if len(args) < 2:
sys.stderr.write(
"username, endpoint, cred_file arguments are required")
sys.exit(1)
ep = args[0]
cred_file = args[1]
print "Using x509_proxy implementation '%s'" % x509_proxy.implementation
_, _, reqs = api.endpoint_activation_requirements(ep,
type="delegate_proxy")
public_key = reqs.get_requirement_value("delegate_proxy", "public_key")
proxy = x509_proxy.create_proxy_from_file(cred_file, public_key)
reqs.set_requirement_value("delegate_proxy", "proxy_chain", proxy)
def unicode_(data):
"""
Coerce any type to unicode, assuming utf-8 encoding for strings.
"""
if isinstance(data, unicode):
return data
if isinstance(data, str):
return unicode(data, "utf-8")
else:
return unicode(data)
def display_ls(endpoint_name, path=""):
code, reason, data = api.endpoint_ls(endpoint_name, path)
# Server returns canonical path; "" maps to the users default path,
# which is typically their home directory "/~/".
path = data["path"]
print "Contents of %s on %s:" % (path, endpoint_name)
headers = "name, type, permissions, size, user, group, last_modified"
headers_list = headers.split(", ")
print headers
for f in data["DATA"]:
print ", ".join([unicode_(f[k]) for k in headers_list])
if __name__ == '__main__':
api, _ = create_client_from_args()
tutorial()
def globus_transfer(image_id, cfg):
packages_directory = os.path.join(os.path.expanduser("~"), ".gdclient","packages")
package_directory = os.path.join(packages_directory, image_id)
if not os.path.isdir(package_directory):
print "Cannot find image "+image_id+" for transfer; please run --package level collaboration"
return
if not cfg.config['GLOBUS']['local-folder']:
print "Cannot obtain from config file: local folder shared in GLOBUS "
return
if not cfg.config['GLOBUS']['local-endpoint']:
print "Cannot obtain from config file: GLOBUS local endpoint"
return
if not cfg.config['GLOBUS']['remote-endpoint']:
print "Cannot obtain from config file: GLOBUS remote endpoint"
return
if not cfg.config['GLOBUS']['globus-remote-folder']:
print "Cannot obtain from config file: globus folder shared in remote GLOBUS endpoint"
return
if not cfg.config['GLOBUS']['globus-local-folder']:
print "Cannot obtain from config file: globus folder shared in local GLOBUS endpoint"
return
print "Please wait. Saving image ..."
short_image_name = image_id.strip()+".tgz"
image_file = cfg.config['GLOBUS']['local-folder']+"/"+short_image_name
command = "cd "+packages_directory+";tar czf "+image_file+" "+ image_id
# print "will run: ",command
run_command(command)
source_endpoint = cfg.config['GLOBUS']['local-endpoint'] # 'globuspublish#cirlab'
source_folder= cfg.config['GLOBUS']['globus-local-folder'] # '/globuspublication_52/'
remote_endpoint = cfg.config['GLOBUS']['remote-endpoint'] # 'globuspublish#cirlab'
remote_folder= cfg.config['GLOBUS']['globus-remote-folder'] # '/globuspublication_52/'
# # command = "ssh [email protected] scp cvlaescx#test_2:/docker_image/dockeraf8db02049ae25d3e64436769411206258b3b003.tar cvlaescx#test:/home/cristian/Installs/new3.tar"
# source = "%s%s%s" %(source_endpoint,source_folder, short_image_name)
# destination = "%s%s%s" %(remote_endpoint,remote_folder, short_image_name)
# command = "ssh %[email protected] transfer -- %s %s" % (cfg.config['Default']['uname'], source, destination)
# # print "will run: ",command
# run_command(command)
# #print "USAGE: transfer [destination_endpoint:destination_folder]"
transfer_args = [cfg.config['Default']['uname'], '-g', cfg.config['Default']['goauth-token']]
TransferAPIClient, _ = create_client_from_args(transfer_args)
activate_endpoint(TransferAPIClient, source_endpoint)
activate_endpoint(TransferAPIClient, remote_endpoint)
# submit the transfer
code, message, data = TransferAPIClient.transfer_submission_id()
submission_id = data["value"]
deadline = datetime.utcnow() + timedelta(minutes=10)
t = Transfer(submission_id, source_endpoint, remote_endpoint, deadline)
source_image_name = "%s%s"%(source_folder,short_image_name)
destination_image_name = "%s%s"%(remote_folder,short_image_name)
t.add_item(source_image_name, destination_image_name)
code, reason, data = TransferAPIClient.transfer(t)
task_id = data["task_id"]
print "Submitted transfer id: ", task_id
return "globus://%s%s%s"%(remote_endpoint,remote_folder,short_image_name)