class SubsetFacetState(State):
log = CallbackProperty(False)
v_min = CallbackProperty(0.)
v_max = CallbackProperty(1.)
steps = CallbackProperty(5)
data = SelectionCallbackProperty()
att = SelectionCallbackProperty()
cmap = CallbackProperty()
def __init__(self, data_collection):
super(SubsetFacetState, self).__init__()
self.data_helper = DataCollectionComboHelper(self, 'data',
data_collection)
self.att_helper = ComponentIDComboHelper(self, 'att')
self.lim_helper = StateAttributeLimitsHelper(self,
attribute='att',
lower='v_min',
upper='v_max',
log='log')
self.add_callback('data', self._on_data_change)
self._on_data_change()
def _on_data_change(self, *args, **kwargs):
self.att_helper.set_multiple_data(
[] if self.data is None else [self.data])
def __init__(self, viewer_state=None, layer=None, **kwargs):
self.vz_att_helper = ComponentIDComboHelper(self,
'vz_att',
numeric=True,
categorical=False)
super(Scatter3dLayerState, self).__init__(viewer_state=viewer_state,
layer=layer)
def __init__(self, **kwargs):
super(HistogramViewerState, self).__init__()
self.hist_helper = StateAttributeHistogramHelper(
self,
'x_att',
lower='hist_x_min',
upper='hist_x_max',
n_bin='hist_n_bin',
common_n_bin='common_n_bin')
self.x_lim_helper = StateAttributeLimitsHelper(self,
'x_att',
lower='x_min',
upper='x_max',
log='x_log')
self.add_callback('layers', self._layers_changed)
self.x_att_helper = ComponentIDComboHelper(self,
'x_att',
pixel_coord=True,
world_coord=True)
self.update_from_dict(kwargs)
# This should be added after update_from_dict since we don't want to
# influence the restoring of sessions.
self.add_callback('hist_x_min', self.update_view_to_bins)
self.add_callback('hist_x_max', self.update_view_to_bins)
self.add_callback('x_log', self._reset_x_limits, priority=1000)
def __init__(self, layer=None, viewer_state=None, **kwargs):
super(ProfileLayerState, self).__init__(layer=layer,
viewer_state=viewer_state)
self.attribute_att_helper = ComponentIDComboHelper(self,
'attribute',
numeric=True,
categorical=False)
percentile_display = {
100: 'Min/Max',
99.5: '99.5%',
99: '99%',
95: '95%',
90: '90%',
'Custom': 'Custom'
}
ProfileLayerState.percentile.set_choices(
self, [100, 99.5, 99, 95, 90, 'Custom'])
ProfileLayerState.percentile.set_display_func(self,
percentile_display.get)
self.add_callback('layer', self._update_attribute, priority=1000)
self.add_callback('layer', self._update_profile, priority=1000)
self.add_callback('attribute', self._update_profile, priority=1000)
if layer is not None:
self._update_attribute()
self.update_from_dict(kwargs)
class SaveDataState(State):
data = SelectionCallbackProperty()
component = SelectionCallbackProperty()
exporter = SelectionCallbackProperty()
def __init__(self, data_collection=None):
super(SaveDataState, self).__init__()
self.data_helper = DataCollectionComboHelper(self, 'data', data_collection)
self.component_helper = ComponentIDComboHelper(self, 'component',
data_collection=data_collection)
self.add_callback('data', self._on_data_change)
self._on_data_change()
self._sync_data_exporters()
def _sync_data_exporters(self):
exporters = list(config.data_exporter)
def display_func(exporter):
if exporter.extension == '':
return "{0} (*)".format(exporter.label)
else:
return "{0} ({1})".format(exporter.label, ' '.join('*.' + ext for ext in exporter.extension))
SaveDataState.exporter.set_choices(self, exporters)
SaveDataState.exporter.set_display_func(self, display_func)
def _on_data_change(self, event=None):
self.component_helper.set_multiple_data([self.data])
def __init__(self, **kwargs):
super(ScatterViewerState, self).__init__()
self.limits_cache = {}
self.x_lim_helper = StateAttributeLimitsHelper(self, attribute='x_att',
lower='x_min', upper='x_max',
log='x_log', margin=0.05,
limits_cache=self.limits_cache)
self.y_lim_helper = StateAttributeLimitsHelper(self, attribute='y_att',
lower='y_min', upper='y_max',
log='y_log', margin=0.05,
limits_cache=self.limits_cache)
self.add_callback('layers', self._layers_changed)
self.x_att_helper = ComponentIDComboHelper(self, 'x_att', pixel_coord=True, world_coord=True)
self.y_att_helper = ComponentIDComboHelper(self, 'y_att', pixel_coord=True, world_coord=True)
self.update_from_dict(kwargs)
self.add_callback('x_log', self._reset_x_limits)
self.add_callback('y_log', self._reset_y_limits)
def __init__(self, layer=None, **kwargs):
self._sync_markersize = None
super(ScatterLayerState, self).__init__(layer=layer)
if self.layer is not None:
self.color = self.layer.style.color
self.size = self.layer.style.markersize
self.alpha = self.layer.style.alpha
self.size_att_helper = ComponentIDComboHelper(self, 'size_attribute')
self.cmap_att_helper = ComponentIDComboHelper(self, 'cmap_attribute')
self.size_lim_helper = StateAttributeLimitsHelper(self, attribute='size_attribute',
lower='size_vmin', upper='size_vmax',
cache=self.size_limits_cache)
self.cmap_lim_helper = StateAttributeLimitsHelper(self, attribute='cmap_attribute',
lower='cmap_vmin', upper='cmap_vmax',
cache=self.cmap_limits_cache)
self.add_callback('layer', self._on_layer_change)
if layer is not None:
self._on_layer_change()
self.cmap = colormaps.members[0][1]
self.update_from_dict(kwargs)
def __init__(self, *args, **kwargs):
super(TutorialViewerState, self).__init__(*args, **kwargs)
self._x_att_helper = ComponentIDComboHelper(self, 'x_att')
self._y_att_helper = ComponentIDComboHelper(self, 'y_att')
self.add_callback('layers', self._on_layers_change)
self.add_callback('x_att', self._on_attribute_change)
self.add_callback('y_att', self._on_attribute_change)
class SpecvizLayerState(LayerState):
"""
"""
color = CallbackProperty(docstring='The color used to display the data')
alpha = CallbackProperty(docstring='The transparency used to display the data')
linewidth = CallbackProperty(1, docstring='The width of the line for the data')
attribute = SelectionCallbackProperty(docstring='The attribute to use for the spectrum')
statistic = SelectionCallbackProperty(docstring='The statistic to use to collapse data')
def __init__(self, viewer_state=None, **kwargs):
super(SpecvizLayerState, self).__init__(viewer_state=viewer_state, **kwargs)
self.color = self.layer.style.color
self.alpha = self.layer.style.alpha
self._sync_color = keep_in_sync(self, 'color', self.layer.style, 'color')
self._sync_alpha = keep_in_sync(self, 'alpha', self.layer.style, 'alpha')
self._att_helper = ComponentIDComboHelper(self, 'attribute')
self.add_callback('layer', self._on_layer_change)
self._on_layer_change()
SpecvizLayerState.statistic.set_choices(self, list(FUNCTIONS))
SpecvizLayerState.statistic.set_display_func(self, FUNCTIONS.get)
def _on_layer_change(self, *args):
if self.layer is None:
self._att_helper.set_multiple_data([])
else:
self._att_helper.set_multiple_data([self.layer])
def __init__(self, **kwargs):
super(WWTDataViewerState, self).__init__()
WWTDataViewerState.mode.set_choices(self, ['Sky'] + MODES_3D + MODES_BODIES)
WWTDataViewerState.frame.set_choices(self, CELESTIAL_FRAMES)
WWTDataViewerState.alt_unit.set_choices(self, [str(x) for x in ALT_UNITS])
WWTDataViewerState.alt_type.set_choices(self, ALT_TYPES)
self.add_callback('imagery_layers', self._update_imagery_layers)
self.lon_att_helper = ComponentIDComboHelper(self, 'lon_att',
numeric=True,
categorical=False,
world_coord=True,
pixel_coord=False)
self.lat_att_helper = ComponentIDComboHelper(self, 'lat_att',
numeric=True,
categorical=False,
world_coord=True,
pixel_coord=False)
self.alt_att_helper = ComponentIDComboHelper(self, 'alt_att',
numeric=True,
categorical=False,
world_coord=True,
pixel_coord=False,
none='None')
self.add_callback('layers', self._on_layers_changed)
self._on_layers_changed()
self.update_from_dict(kwargs)
class SpecvizLayerState(LayerState):
"""
"""
color = CallbackProperty(docstring='The color used to display the data')
alpha = CallbackProperty(docstring='The transparency used to display the data')
linewidth = CallbackProperty(1, docstring='The width of the line for the data')
attribute = SelectionCallbackProperty(docstring='The attribute to use for the spectrum')
statistic = SelectionCallbackProperty(docstring='The statistic to use to collapse data')
def __init__(self, viewer_state=None, **kwargs):
super(SpecvizLayerState, self).__init__(viewer_state=viewer_state, **kwargs)
self.color = self.layer.style.color
self.alpha = self.layer.style.alpha
self._sync_color = keep_in_sync(self, 'color', self.layer.style, 'color')
self._sync_alpha = keep_in_sync(self, 'alpha', self.layer.style, 'alpha')
self._att_helper = ComponentIDComboHelper(self, 'attribute')
self.add_callback('layer', self._on_layer_change)
self._on_layer_change()
SpecvizLayerState.statistic.set_choices(self, list(FUNCTIONS))
SpecvizLayerState.statistic.set_display_func(self, FUNCTIONS.get)
def _on_layer_change(self, *args):
if self.layer is None:
self._att_helper.set_multiple_data([])
else:
self._att_helper.set_multiple_data([self.layer])
def __init__(self, **kwargs):
super(ImageViewerState, self).__init__()
self.limits_cache = {}
# NOTE: we don't need to use StateAttributeLimitsHelper here because
# we can simply call reset_limits below when x/y attributes change.
# Using StateAttributeLimitsHelper makes things a lot slower.
self.ref_data_helper = ManualDataComboHelper(self, 'reference_data')
self.xw_att_helper = ComponentIDComboHelper(self, 'x_att_world',
numeric=False, categorical=False)
self.yw_att_helper = ComponentIDComboHelper(self, 'y_att_world',
numeric=False, categorical=False)
self.add_callback('reference_data', self._reference_data_changed, priority=1000)
self.add_callback('layers', self._layers_changed, priority=1000)
self.add_callback('x_att', self._on_xatt_change, priority=500)
self.add_callback('y_att', self._on_yatt_change, priority=500)
self.add_callback('x_att_world', self._on_xatt_world_change, priority=1000)
self.add_callback('y_att_world', self._on_yatt_world_change, priority=1000)
aspect_display = {'equal': 'Square Pixels', 'auto': 'Automatic'}
ImageViewerState.aspect.set_choices(self, ['equal', 'auto'])
ImageViewerState.aspect.set_display_func(self, aspect_display.get)
ImageViewerState.color_mode.set_choices(self, ['Colormaps', 'One color per layer'])
self.update_from_dict(kwargs)
def __init__(self, layer=None, **kwargs):
super(VolumeLayerState, self).__init__(layer=layer)
if self.layer is not None:
self.color = self.layer.style.color
self.alpha = self.layer.style.alpha
self.att_helper = ComponentIDComboHelper(self, 'attribute')
self.lim_helper = StateAttributeLimitsHelper(self,
attribute='attribute',
lower='vmin',
upper='vmax',
cache=self.limits_cache)
self.add_callback('layer', self._on_layer_change)
if layer is not None:
self._on_layer_change()
if isinstance(self.layer, Subset):
self.vmin = 0
self.lim_helper.lower_frozen = True
self.update_from_dict(kwargs)
def __init__(self, **kwargs):
super(ScatterViewerState, self).__init__()
self.limits_cache = {}
self.x_lim_helper = StateAttributeLimitsHelper(
self,
attribute='x_att',
lower='x_min',
upper='x_max',
log='x_log',
limits_cache=self.limits_cache)
self.y_lim_helper = StateAttributeLimitsHelper(
self,
attribute='y_att',
lower='y_min',
upper='y_max',
log='y_log',
limits_cache=self.limits_cache)
self.add_callback('layers', self._layers_changed)
self.x_att_helper = ComponentIDComboHelper(self, 'x_att')
self.y_att_helper = ComponentIDComboHelper(self, 'y_att')
self.update_from_dict(kwargs)
def test_component(app, dataxz, dataxyz):
# setup
state = DummyState()
helper = ComponentIDComboHelper(state, 'x_att', app.data_collection)
helper.append_data(dataxz)
state.helper = helper
# main object we test
dropdown = LinkedDropdown(state, 'x_att', 'x test attribute')
# simple sanity tests
assert dropdown.description == 'x test attribute'
assert [item[0] for item in dropdown.options] == ['x', 'z']
# initial state
assert state.x_att is dataxz.id['x']
assert dropdown.value is dataxz.id['x']
# glue state -> ui
state.x_att = dataxz.id['z']
assert dropdown.value is dataxz.id['z']
# ui -> glue state
dropdown.value = dataxz.id['x']
assert state.x_att is dataxz.id['x']
# same, but now be ok with strings
state.x_att = 'z'
assert dropdown.value is dataxz.id['z']
state.x_att = 'x'
assert dropdown.value is dataxz.id['x']
def __init__(self, **kwargs):
super(ProfileViewerState, self).__init__()
self.ref_data_helper = ManualDataComboHelper(self, 'reference_data')
self.x_lim_helper = StateAttributeLimitsHelper(self,
'x_att',
lower='x_min',
upper='x_max')
self.add_callback('layers', self._layers_changed)
self.add_callback('reference_data', self._reference_data_changed)
self.add_callback('normalize', self._reset_y_limits)
self.x_att_helper = ComponentIDComboHelper(self,
'x_att',
numeric=False,
categorical=False,
world_coord=True,
pixel_coord=True)
ProfileViewerState.function.set_choices(self, list(FUNCTIONS))
ProfileViewerState.function.set_display_func(self, FUNCTIONS.get)
self.update_from_dict(kwargs)
def _enable_viewer_combo(self, viewer, data, index, selection_label):
connect_combo_selection(self, selection_label, viewer.combo)
helper = ComponentIDComboHelper(self, selection_label)
helper.set_multiple_data([data])
viewer.combo.setEnabled(True)
viewer.combo.currentIndexChanged.connect(
self._get_change_viewer_combo_func(viewer.combo, index))
self._viewer_combo_helpers.append(helper)
def _enable_viewer_combo(self, viewer, data, index, selection_label):
connect_combo_selection(self, selection_label, viewer.combo)
helper = ComponentIDComboHelper(self, selection_label)
helper.set_multiple_data([data])
viewer.combo.setEnabled(True)
viewer.combo.currentIndexChanged.connect(
self._get_change_viewer_combo_func(viewer.combo, index))
self._viewer_combo_helpers.append(helper)
def __init__(self, layer=None, viewer_state=None, **kwargs):
self.uuid = str(uuid.uuid4())
super(ImageLayerState, self).__init__(layer=layer,
viewer_state=viewer_state)
self.attribute_lim_helper = StateAttributeLimitsHelper(
self,
attribute='attribute',
percentile='percentile',
lower='v_min',
upper='v_max')
self.attribute_att_helper = ComponentIDComboHelper(self,
'attribute',
numeric=True,
categorical=False)
percentile_display = {
100: 'Min/Max',
99.5: '99.5%',
99: '99%',
95: '95%',
90: '90%',
'Custom': 'Custom'
}
ImageLayerState.percentile.set_choices(
self, [100, 99.5, 99, 95, 90, 'Custom'])
ImageLayerState.percentile.set_display_func(self,
percentile_display.get)
stretch_display = {
'linear': 'Linear',
'sqrt': 'Square Root',
'arcsinh': 'Arcsinh',
'log': 'Logarithmic'
}
ImageLayerState.stretch.set_choices(
self, ['linear', 'sqrt', 'arcsinh', 'log'])
ImageLayerState.stretch.set_display_func(self, stretch_display.get)
self.add_callback('global_sync', self._update_syncing)
self.add_callback('layer', self._update_attribute)
self._update_syncing()
if layer is not None:
self._update_attribute()
self.update_from_dict(kwargs)
if self.cmap is None:
self.cmap = self.layer.style.preferred_cmap or colormaps.members[
0][1]
def __init__(self, *args, **kwargs):
super(TutorialViewerState, self).__init__(*args, **kwargs)
self._x_att_helper = ComponentIDComboHelper(self, 'x_att')
self._y_att_helper = ComponentIDComboHelper(self, 'y_att')
self.add_callback('layers', self._on_layers_change)
self.add_callback('x_att', self._on_attribute_change)
self.add_callback('y_att', self._on_attribute_change)
TutorialViewerState.orientation.set_choices(
self, ['bottom-up', 'left-right', 'top-down', 'right-left'])
self.add_callback('orientation', self._on_attribute_change)
def __init__(self, **kwargs):
super(ImageViewerState, self).__init__()
self.limits_cache = {}
self.x_lim_helper = StateAttributeLimitsHelper(
self,
attribute='x_att',
lower='x_min',
upper='x_max',
limits_cache=self.limits_cache)
self.y_lim_helper = StateAttributeLimitsHelper(
self,
attribute='y_att',
lower='y_min',
upper='y_max',
limits_cache=self.limits_cache)
self.ref_data_helper = ManualDataComboHelper(self, 'reference_data')
self.xw_att_helper = ComponentIDComboHelper(self,
'x_att_world',
numeric=False,
categorical=False,
visible=False,
world_coord=True)
self.yw_att_helper = ComponentIDComboHelper(self,
'y_att_world',
numeric=False,
categorical=False,
visible=False,
world_coord=True)
self.add_callback('reference_data',
self._reference_data_changed,
priority=1000)
self.add_callback('layers', self._layers_changed, priority=1000)
self.add_callback('x_att', self._on_xatt_change, priority=500)
self.add_callback('y_att', self._on_yatt_change, priority=500)
self.add_callback('x_att_world', self._update_att, priority=500)
self.add_callback('y_att_world', self._update_att, priority=500)
self.add_callback('x_att_world',
self._on_xatt_world_change,
priority=1000)
self.add_callback('y_att_world',
self._on_yatt_world_change,
priority=1000)
self.update_from_dict(kwargs)
def __init__(self, **kwargs):
super(Vispy3DScatterViewerState, self).__init__()
self.x_att_helper = ComponentIDComboHelper(self, 'x_att', categorical=False)
self.y_att_helper = ComponentIDComboHelper(self, 'y_att', categorical=False)
self.z_att_helper = ComponentIDComboHelper(self, 'z_att', categorical=False)
self.add_callback('layers', self._on_layers_change)
self.update_from_dict(kwargs)
def __init__(self, data_collection):
super(SubsetFacetState, self).__init__()
self.data_helper = DataCollectionComboHelper(self, 'data', data_collection)
self.att_helper = ComponentIDComboHelper(self, 'att')
self.lim_helper = StateAttributeLimitsHelper(self, attribute='att',
lower='v_min', upper='v_max',
log='log')
self.add_callback('data', self._on_data_change)
self._on_data_change()
def __init__(self, parent=None, data_viewer=None):
super(OptionsWidget, self).__init__(parent=parent)
self.ui = load_ui('viewer_options.ui',
self,
directory=os.path.dirname(__file__))
self.file_helper = ComponentIDComboHelper(
self, 'file_att', data_collection=data_viewer._data)
connect_combo_selection(self, 'file_att', self.ui.combo_file_attribute)
def __init__(self, data_collection=None):
super(SaveDataState, self).__init__()
self.data_helper = DataCollectionComboHelper(self, 'data', data_collection)
self.component_helper = ComponentIDComboHelper(self, 'component',
data_collection=data_collection)
self.add_callback('data', self._on_data_change)
self._on_data_change()
self._sync_data_exporters()
def __init__(self, **kwargs):
super(ScatterViewerState, self).__init__()
self.limits_cache = {}
self.x_lim_helper = StateAttributeLimitsHelper(
self,
attribute='x_att',
lower='x_min',
upper='x_max',
log='x_log',
margin=0.04,
limits_cache=self.limits_cache)
self.y_lim_helper = StateAttributeLimitsHelper(
self,
attribute='y_att',
lower='y_min',
upper='y_max',
log='y_log',
margin=0.04,
limits_cache=self.limits_cache)
self.add_callback('layers', self._layers_changed)
self.x_att_helper = ComponentIDComboHelper(self,
'x_att',
pixel_coord=True,
world_coord=True)
self.y_att_helper = ComponentIDComboHelper(self,
'y_att',
pixel_coord=True,
world_coord=True)
self.plot_mode_helper = ComboHelper(self, 'plot_mode')
self.plot_mode_helper.choices = [
proj for proj in get_projection_names()
if proj not in ['3d', 'scatter_density']
]
self.plot_mode_helper.selection = 'rectilinear'
self.angle_unit_helper = ComboHelper(self, 'angle_unit')
self.angle_unit_helper.choices = ['radians', 'degrees']
self.angle_unit_helper.selection = 'radians'
self.update_from_dict(kwargs)
self.add_callback('x_log', self._reset_x_limits)
self.add_callback('y_log', self._reset_y_limits)
if self.using_polar:
self.full_circle()
def __init__(self, *args, **kwargs):
# provides dropdown, parent, height etc. for plot options
super(TutorialViewerState, self).__init__(*args, **kwargs)
self._x_att_helper = ComponentIDComboHelper(self, 'x_att')
self._y_att_helper = ComponentIDComboHelper(self, 'y_att')
self.add_callback('layers', self._on_layers_change)
self.add_callback('x_att', self._on_attribute_change)
self.add_callback('y_att', self._on_attribute_change)
TutorialViewerState.orientation.set_choices(
self, ['bottom-up', 'left-right', 'top-down', 'right-left'])
self.add_callback('orientation', self._on_attribute_change)
TutorialViewerState.sort_by.set_choices(self, ['parent', 'height'])
self.add_callback('sort_by', self._on_attribute_change)
def __init__(self, **kwargs):
super(OpenSpaceViewerState, self).__init__()
OpenSpaceViewerState.mode.set_choices(self, MODES)
OpenSpaceViewerState.frame.set_choices(self, CELESTIAL_FRAMES)
OpenSpaceViewerState.alt_unit.set_choices(
self, [str(x) for x in ALTERNATIVE_UNITS])
OpenSpaceViewerState.alt_type.set_choices(self, ALTERNATIVE_TYPES)
self.lon_att_helper = ComponentIDComboHelper(self,
'lon_att',
numeric=True,
categorical=False,
world_coord=True,
pixel_coord=False)
self.lat_att_helper = ComponentIDComboHelper(self,
'lat_att',
numeric=True,
categorical=False,
world_coord=True,
pixel_coord=False)
self.lum_att_helper = ComponentIDComboHelper(self,
'lum_att',
numeric=True,
categorical=False,
world_coord=True,
pixel_coord=False)
self.vel_att_helper = ComponentIDComboHelper(self,
'vel_att',
numeric=True,
categorical=False,
world_coord=True,
pixel_coord=False)
self.alt_att_helper = ComponentIDComboHelper(self,
'alt_att',
numeric=True,
categorical=False,
world_coord=True,
pixel_coord=False)
self.add_callback('layers', self._on_layers_changed)
self._on_layers_changed()
self.update_from_dict(kwargs)
def __init__(self, viewer_state=None, layer=None, **kwargs):
super(ScatterLayerState, self).__init__(viewer_state=viewer_state, layer=layer)
self.limits_cache = {}
self.cmap_lim_helper = StateAttributeLimitsHelper(self, attribute='cmap_att',
lower='cmap_vmin', upper='cmap_vmax',
limits_cache=self.limits_cache)
self.size_lim_helper = StateAttributeLimitsHelper(self, attribute='size_att',
lower='size_vmin', upper='size_vmax',
limits_cache=self.limits_cache)
self.cmap_att_helper = ComponentIDComboHelper(self, 'cmap_att',
numeric=True, categorical=False)
self.size_att_helper = ComponentIDComboHelper(self, 'size_att',
numeric=True, categorical=False)
self.xerr_att_helper = ComponentIDComboHelper(self, 'xerr_att',
numeric=True, categorical=False)
self.yerr_att_helper = ComponentIDComboHelper(self, 'yerr_att',
numeric=True, categorical=False)
ScatterLayerState.style.set_choices(self, ['Scatter', 'Line'])
ScatterLayerState.cmap_mode.set_choices(self, ['Fixed', 'Linear'])
ScatterLayerState.size_mode.set_choices(self, ['Fixed', 'Linear'])
linestyle_display = {'solid': '–––––––',
'dashed': '– – – – –',
'dotted': '· · · · · · · ·',
'dashdot': '– · – · – ·'}
ScatterLayerState.linestyle.set_choices(self, ['solid', 'dashed', 'dotted', 'dashdot'])
ScatterLayerState.linestyle.set_display_func(self, linestyle_display.get)
self.add_callback('layer', self._on_layer_change)
if layer is not None:
self._on_layer_change()
self.cmap = colormaps.members[0][1]
self.size = self.layer.style.markersize
self._sync_size = keep_in_sync(self, 'size', self.layer.style, 'markersize')
self.update_from_dict(kwargs)
class VolumeLayerState(VispyLayerState):
"""
A state object for volume layers
"""
attribute = SelectionCallbackProperty()
vmin = CallbackProperty()
vmax = CallbackProperty()
subset_mode = CallbackProperty('data')
limits_cache = CallbackProperty({})
def __init__(self, layer=None, **kwargs):
super(VolumeLayerState, self).__init__(layer=layer)
if self.layer is not None:
self.color = self.layer.style.color
self.alpha = self.layer.style.alpha
self.att_helper = ComponentIDComboHelper(self, 'attribute')
self.lim_helper = StateAttributeLimitsHelper(self,
attribute='attribute',
lower='vmin',
upper='vmax',
cache=self.limits_cache)
self.add_callback('layer', self._on_layer_change)
if layer is not None:
self._on_layer_change()
if isinstance(self.layer, Subset):
self.vmin = 0
self.lim_helper.lower_frozen = True
self.update_from_dict(kwargs)
def _on_layer_change(self, layer=None):
with delay_callback(self, 'vmin', 'vmin'):
if self.layer is None:
self.att_helper.set_multiple_data([])
else:
self.att_helper.set_multiple_data([self.layer])
def update_priority(self, name):
return 0 if name.endswith(('vmin', 'vmax')) else 1
class SaveDataState(State):
data = SelectionCallbackProperty()
subset = SelectionCallbackProperty()
component = SelectionCallbackProperty()
exporter = SelectionCallbackProperty()
def __init__(self, data_collection=None):
super(SaveDataState, self).__init__()
self.data_helper = DataCollectionComboHelper(self, 'data', data_collection)
self.component_helper = ComponentIDComboHelper(self, 'component',
data_collection=data_collection)
self.add_callback('data', self._on_data_change)
self._on_data_change()
self._sync_data_exporters()
def _sync_data_exporters(self):
exporters = list(config.data_exporter)
def display_func(exporter):
if exporter.extension == '':
return "{0} (*)".format(exporter.label)
else:
return "{0} ({1})".format(exporter.label, ' '.join('*.' + ext for ext in exporter.extension))
SaveDataState.exporter.set_choices(self, exporters)
SaveDataState.exporter.set_display_func(self, display_func)
def _on_data_change(self, event=None):
self.component_helper.set_multiple_data([self.data])
self._sync_subsets()
def _sync_subsets(self):
def display_func(subset):
if subset is None:
return "All data (no subsets applied)"
else:
return subset.label
subsets = [None] + list(self.data.subsets)
SaveDataState.subset.set_choices(self, subsets)
SaveDataState.subset.set_display_func(self, display_func)
class Scatter3dLayerState(ScatterLayerState):
vz_att = DDSCProperty(docstring="The attribute to use for the z vector arrow")
def __init__(self, viewer_state=None, layer=None, **kwargs):
self.vz_att_helper = ComponentIDComboHelper(self, 'vz_att',
numeric=True, categorical=False)
super(Scatter3dLayerState, self).__init__(viewer_state=viewer_state, layer=layer)
# self.update_from_dict(kwargs)
def _on_layer_change(self, layer=None):
super(Scatter3dLayerState, self)._on_layer_change(layer=layer)
if self.layer is None:
self.vz_att_helper.set_multiple_data([])
else:
self.vz_att_helper.set_multiple_data([self.layer])
class TutorialViewerState(ViewerState):
x_att = SelectionCallbackProperty(docstring='The attribute to use on the x-axis')
y_att = SelectionCallbackProperty(docstring='The attribute to use on the y-axis')
def __init__(self, *args, **kwargs):
super(TutorialViewerState, self).__init__(*args, **kwargs)
self._x_att_helper = ComponentIDComboHelper(self, 'x_att')
self._y_att_helper = ComponentIDComboHelper(self, 'y_att')
self.add_callback('layers', self._on_layers_change)
def _on_layers_change(self, value):
# self.layers_data is a shortcut for
# [layer_state.layer for layer_state in self.layers]
self._x_att_helper.set_multiple_data(self.layers_data)
self._y_att_helper.set_multiple_data(self.layers_data)
def __init__(self, viewer_state=None, **kwargs):
super(SpecvizLayerState, self).__init__(viewer_state=viewer_state, **kwargs)
self.color = self.layer.style.color
self.alpha = self.layer.style.alpha
self._sync_color = keep_in_sync(self, 'color', self.layer.style, 'color')
self._sync_alpha = keep_in_sync(self, 'alpha', self.layer.style, 'alpha')
self._att_helper = ComponentIDComboHelper(self, 'attribute')
self.add_callback('layer', self._on_layer_change)
self._on_layer_change()
SpecvizLayerState.statistic.set_choices(self, list(FUNCTIONS))
SpecvizLayerState.statistic.set_display_func(self, FUNCTIONS.get)
class VolumeLayerState(VispyLayerState):
"""
A state object for volume layers
"""
attribute = SelectionCallbackProperty()
vmin = CallbackProperty()
vmax = CallbackProperty()
subset_mode = CallbackProperty('data')
limits_cache = CallbackProperty({})
def __init__(self, layer=None, **kwargs):
super(VolumeLayerState, self).__init__(layer=layer)
if self.layer is not None:
self.color = self.layer.style.color
self.alpha = self.layer.style.alpha
self.att_helper = ComponentIDComboHelper(self, 'attribute')
self.lim_helper = StateAttributeLimitsHelper(self, attribute='attribute',
lower='vmin', upper='vmax',
cache=self.limits_cache)
self.add_callback('layer', self._on_layer_change)
if layer is not None:
self._on_layer_change()
if isinstance(self.layer, Subset):
self.vmin = 0
self.lim_helper.lower_frozen = True
self.update_from_dict(kwargs)
def _on_layer_change(self, layer=None):
with delay_callback(self, 'vmin', 'vmin'):
if self.layer is None:
self.att_helper.set_multiple_data([])
else:
self.att_helper.set_multiple_data([self.layer])
def update_priority(self, name):
return 0 if name.endswith(('vmin', 'vmax')) else 1
def __init__(self, layer=None, **kwargs):
super(WWTImageLayerState, self).__init__(layer=layer)
self._sync_color = keep_in_sync(self, 'color', self.layer.style, 'color')
self._sync_alpha = keep_in_sync(self, 'alpha', self.layer.style, 'alpha')
self.color = self.layer.style.color
self.img_data_att_helper = ComponentIDComboHelper(self, 'img_data_att',
numeric=True,
categorical=False)
self.add_callback('layer', self._on_layer_change)
if layer is not None:
self._on_layer_change()
self.update_from_dict(kwargs)
def __init__(self, layer=None, **kwargs):
self._sync_markersize = None
super(WWTLayerState, self).__init__(layer=layer)
self._sync_color = keep_in_sync(self, 'color', self.layer.style, 'color')
self._sync_alpha = keep_in_sync(self, 'alpha', self.layer.style, 'alpha')
self._sync_size = keep_in_sync(self, 'size', self.layer.style, 'markersize')
self.color = self.layer.style.color
self.size = self.layer.style.markersize
self.alpha = self.layer.style.alpha
self.size_att_helper = ComponentIDComboHelper(self, 'size_att',
numeric=True,
categorical=False)
self.cmap_att_helper = ComponentIDComboHelper(self, 'cmap_att',
numeric=True,
categorical=False)
self.size_lim_helper = StateAttributeLimitsHelper(self, attribute='size_att',
lower='size_vmin', upper='size_vmax',
cache=self.size_limits_cache)
self.cmap_lim_helper = StateAttributeLimitsHelper(self, attribute='cmap_att',
lower='cmap_vmin', upper='cmap_vmax',
cache=self.cmap_limits_cache)
self.add_callback('layer', self._on_layer_change)
if layer is not None:
self._on_layer_change()
self.cmap = colormaps.members[0][1]
# Color and size encoding depending on attributes is only available
# in PyWWT 0.6 or later.
if PYWWT_LT_06:
modes = ['Fixed']
else:
modes = ['Fixed', 'Linear']
WWTLayerState.color_mode.set_choices(self, modes)
WWTLayerState.size_mode.set_choices(self, modes)
self.update_from_dict(kwargs)
def __init__(self, **kwargs):
super(DendrogramViewerState, self).__init__()
self.add_callback('layers', self._layers_changed)
self.height_att_helper = ComponentIDComboHelper(self, 'height_att')
self.parent_att_helper = ComponentIDComboHelper(self, 'parent_att')
self.order_att_helper = ComponentIDComboHelper(self, 'order_att')
self.add_callback('height_att', self._update_layout)
self.add_callback('parent_att', self._update_layout)
self.add_callback('order_att', self._update_layout)
self.add_callback('reference_data', self._on_reference_data_change)
self.update_from_dict(kwargs)
def __init__(self, *args, **kwargs):
super(CustomMatplotlibViewerState, self).__init__(*args)
self._cid_helpers = []
for name, property in self.iter_callback_properties():
if isinstance(property, DynamicComponentIDProperty):
self._cid_helpers.append(ComponentIDComboHelper(self, name))
self.add_callback('layers', self._on_layer_change)
self.update_from_dict(kwargs)
def test_component_default_index(app, dataxz, dataxyz):
# Regression test for a bug that caused the incorrect element to be selected
# when default_index is involved.
# setup
state = DummyState()
helper = ComponentIDComboHelper(state, 'y_att', app.data_collection)
state.helper = helper
dropdown = LinkedDropdown(state, 'y_att', 'y test attribute')
assert [item[0] for item in dropdown.options] == []
helper.append_data(dataxz)
assert [item[0] for item in dropdown.options] == ['x', 'z']
assert state.y_att is dataxz.id['z']
assert dropdown.value is dataxz.id['z']
def __init__(self, data_collection=None):
super(SaveDataState, self).__init__()
self.data_helper = DataCollectionComboHelper(self, 'data', data_collection)
self.component_helper = ComponentIDComboHelper(self, 'component',
data_collection=data_collection)
self.add_callback('data', self._on_data_change)
self._on_data_change()
self._sync_data_exporters()
def __init__(self, **kwargs):
super(ImageViewerState, self).__init__()
self.limits_cache = {}
self.x_lim_helper = StateAttributeLimitsHelper(self, attribute='x_att',
lower='x_min', upper='x_max',
limits_cache=self.limits_cache)
self.y_lim_helper = StateAttributeLimitsHelper(self, attribute='y_att',
lower='y_min', upper='y_max',
limits_cache=self.limits_cache)
self.ref_data_helper = ManualDataComboHelper(self, 'reference_data')
self.xw_att_helper = ComponentIDComboHelper(self, 'x_att_world',
numeric=False, categorical=False,
world_coord=True)
self.yw_att_helper = ComponentIDComboHelper(self, 'y_att_world',
numeric=False, categorical=False,
world_coord=True)
self.add_callback('reference_data', self._reference_data_changed, priority=1000)
self.add_callback('layers', self._layers_changed, priority=1000)
self.add_callback('x_att', self._on_xatt_change, priority=500)
self.add_callback('y_att', self._on_yatt_change, priority=500)
self.add_callback('x_att_world', self._update_att, priority=500)
self.add_callback('y_att_world', self._update_att, priority=500)
self.add_callback('x_att_world', self._on_xatt_world_change, priority=1000)
self.add_callback('y_att_world', self._on_yatt_world_change, priority=1000)
self.update_from_dict(kwargs)
def __init__(self, viewer_state=None, **kwargs):
super(SpecvizLayerState, self).__init__(viewer_state=viewer_state, **kwargs)
self.color = self.layer.style.color
self.alpha = self.layer.style.alpha
self._sync_color = keep_in_sync(self, 'color', self.layer.style, 'color')
self._sync_alpha = keep_in_sync(self, 'alpha', self.layer.style, 'alpha')
self._att_helper = ComponentIDComboHelper(self, 'attribute')
self.add_callback('layer', self._on_layer_change)
self._on_layer_change()
SpecvizLayerState.statistic.set_choices(self, list(FUNCTIONS))
SpecvizLayerState.statistic.set_display_func(self, FUNCTIONS.get)
def __init__(self, **kwargs):
super(HistogramViewerState, self).__init__()
self.hist_helper = StateAttributeHistogramHelper(self, 'x_att', lower='hist_x_min',
upper='hist_x_max', n_bin='hist_n_bin',
common_n_bin='common_n_bin')
self.x_lim_helper = StateAttributeLimitsHelper(self, 'x_att', lower='x_min',
upper='x_max', log='x_log')
self.add_callback('layers', self._layers_changed)
self.x_att_helper = ComponentIDComboHelper(self, 'x_att')
self.update_from_dict(kwargs)
def __init__(self, **kwargs):
super(ProfileViewerState, self).__init__()
self.ref_data_helper = ManualDataComboHelper(self, 'reference_data')
self.add_callback('layers', self._layers_changed)
self.add_callback('reference_data', self._reference_data_changed)
self.add_callback('x_att', self._update_att)
self.add_callback('normalize', self._reset_y_limits)
self.x_att_helper = ComponentIDComboHelper(self, 'x_att',
numeric=False, categorical=False,
pixel_coord=True)
ProfileViewerState.function.set_choices(self, list(FUNCTIONS))
ProfileViewerState.function.set_display_func(self, FUNCTIONS.get)
self.update_from_dict(kwargs)
def __init__(self, layer=None, viewer_state=None, **kwargs):
self.uuid = str(uuid.uuid4())
super(ImageLayerState, self).__init__(layer=layer, viewer_state=viewer_state)
self.attribute_lim_helper = StateAttributeLimitsHelper(self, attribute='attribute',
percentile='percentile',
lower='v_min', upper='v_max')
self.attribute_att_helper = ComponentIDComboHelper(self, 'attribute',
numeric=True, categorical=False)
percentile_display = {100: 'Min/Max',
99.5: '99.5%',
99: '99%',
95: '95%',
90: '90%',
'Custom': 'Custom'}
ImageLayerState.percentile.set_choices(self, [100, 99.5, 99, 95, 90, 'Custom'])
ImageLayerState.percentile.set_display_func(self, percentile_display.get)
stretch_display = {'linear': 'Linear',
'sqrt': 'Square Root',
'arcsinh': 'Arcsinh',
'log': 'Logarithmic'}
ImageLayerState.stretch.set_choices(self, ['linear', 'sqrt', 'arcsinh', 'log'])
ImageLayerState.stretch.set_display_func(self, stretch_display.get)
self.add_callback('global_sync', self._update_syncing)
self.add_callback('layer', self._update_attribute)
self._update_syncing()
if layer is not None:
self._update_attribute()
self.update_from_dict(kwargs)
if self.cmap is None:
self.cmap = colormaps.members[0][1]
def __init__(self, layer=None, viewer_state=None, **kwargs):
super(ProfileLayerState, self).__init__(layer=layer, viewer_state=viewer_state)
self.attribute_att_helper = ComponentIDComboHelper(self, 'attribute',
numeric=True, categorical=False)
percentile_display = {100: 'Min/Max',
99.5: '99.5%',
99: '99%',
95: '95%',
90: '90%',
'Custom': 'Custom'}
ProfileLayerState.percentile.set_choices(self, [100, 99.5, 99, 95, 90, 'Custom'])
ProfileLayerState.percentile.set_display_func(self, percentile_display.get)
self.add_callback('layer', self._update_attribute, priority=1000)
if layer is not None:
self._update_attribute()
self.update_from_dict(kwargs)
def __init__(self, **kwargs):
super(HistogramViewerState, self).__init__()
self.hist_helper = StateAttributeHistogramHelper(self, 'x_att', lower='hist_x_min',
upper='hist_x_max', n_bin='hist_n_bin',
common_n_bin='common_n_bin')
self.x_lim_helper = StateAttributeLimitsHelper(self, 'x_att', lower='x_min',
upper='x_max', log='x_log')
self.add_callback('layers', self._layers_changed)
self.x_att_helper = ComponentIDComboHelper(self, 'x_att',
pixel_coord=True, world_coord=True)
self.update_from_dict(kwargs)
# This should be added after update_from_dict since we don't want to
# influence the restoring of sessions.
self.add_callback('hist_x_min', self.update_view_to_bins)
self.add_callback('hist_x_max', self.update_view_to_bins)
self.add_callback('x_log', self._reset_x_limits, priority=1000)
def __init__(self, layer=None, **kwargs):
super(VolumeLayerState, self).__init__(layer=layer)
if self.layer is not None:
self.color = self.layer.style.color
self.alpha = self.layer.style.alpha
self.att_helper = ComponentIDComboHelper(self, 'attribute')
self.lim_helper = StateAttributeLimitsHelper(self, attribute='attribute',
lower='vmin', upper='vmax',
cache=self.limits_cache)
self.add_callback('layer', self._on_layer_change)
if layer is not None:
self._on_layer_change()
if isinstance(self.layer, Subset):
self.vmin = 0
self.lim_helper.lower_frozen = True
self.update_from_dict(kwargs)
class Vispy3DScatterViewerState(Vispy3DViewerState):
def __init__(self, **kwargs):
super(Vispy3DScatterViewerState, self).__init__()
self.x_att_helper = ComponentIDComboHelper(self, 'x_att', categorical=False)
self.y_att_helper = ComponentIDComboHelper(self, 'y_att', categorical=False)
self.z_att_helper = ComponentIDComboHelper(self, 'z_att', categorical=False)
self.add_callback('layers', self._on_layers_change)
self.update_from_dict(kwargs)
def _on_layers_change(self, *args):
layers_data = [layer_state.layer for layer_state in self.layers]
self.x_att_helper.set_multiple_data(layers_data)
self.y_att_helper.set_multiple_data(layers_data)
self.z_att_helper.set_multiple_data(layers_data)
class DendrogramViewerState(MatplotlibDataViewerState):
"""
A state class that includes all the attributes for a dendrogram viewer.
"""
height_att = DDSCProperty()
parent_att = DDSCProperty()
order_att = DDSCProperty()
y_log = DDCProperty(False)
select_substruct = DDCProperty(True)
reference_data = DDCProperty()
_layout = DDCProperty()
def __init__(self, **kwargs):
super(DendrogramViewerState, self).__init__()
self.add_callback('layers', self._layers_changed)
self.height_att_helper = ComponentIDComboHelper(self, 'height_att')
self.parent_att_helper = ComponentIDComboHelper(self, 'parent_att')
self.order_att_helper = ComponentIDComboHelper(self, 'order_att')
self.add_callback('height_att', self._update_layout)
self.add_callback('parent_att', self._update_layout)
self.add_callback('order_att', self._update_layout)
self.add_callback('reference_data', self._on_reference_data_change)
self.update_from_dict(kwargs)
def _on_reference_data_change(self, data):
if self.reference_data is None:
return
self.height_att = self.reference_data.find_component_id('height')
self.parent_att = self.reference_data.find_component_id('parent')
self.order_att = self.height_att
def _update_layout(self, att):
if self.height_att is None or self.parent_att is None or self.order_att is None or self.reference_data is None:
self._layout = None
else:
height = self.reference_data[self.height_att].ravel()
parent = self.reference_data[self.parent_att].astype(int).ravel()
order = self.reference_data[self.order_att].ravel()
x, y = dendrogram_layout(parent, height, order)
self._layout = Layout(x, y)
def _layers_changed(self, *args):
layers_data = self.layers_data
layers_data_cache = getattr(self, '_layers_data_cache', [])
if layers_data == layers_data_cache:
return
self.height_att_helper.set_multiple_data(layers_data)
self.parent_att_helper.set_multiple_data(layers_data)
self.order_att_helper.set_multiple_data(layers_data)
for layer in layers_data:
if isinstance(layer, Data):
self.reference_data = layer
break
self._layers_data_cache = layers_data
def __init__(self, viewer_state=None, layer=None, **kwargs):
super(ScatterLayerState, self).__init__(viewer_state=viewer_state, layer=layer)
self.limits_cache = {}
self.cmap_lim_helper = StateAttributeLimitsHelper(self, attribute='cmap_att',
lower='cmap_vmin', upper='cmap_vmax',
limits_cache=self.limits_cache)
self.size_lim_helper = StateAttributeLimitsHelper(self, attribute='size_att',
lower='size_vmin', upper='size_vmax',
limits_cache=self.limits_cache)
self.cmap_att_helper = ComponentIDComboHelper(self, 'cmap_att',
numeric=True, categorical=False)
self.size_att_helper = ComponentIDComboHelper(self, 'size_att',
numeric=True, categorical=False)
self.xerr_att_helper = ComponentIDComboHelper(self, 'xerr_att',
numeric=True, categorical=False)
self.yerr_att_helper = ComponentIDComboHelper(self, 'yerr_att',
numeric=True, categorical=False)
self.vx_att_helper = ComponentIDComboHelper(self, 'vx_att',
numeric=True, categorical=False)
self.vy_att_helper = ComponentIDComboHelper(self, 'vy_att',
numeric=True, categorical=False)
points_mode_display = {'auto': 'Density map or markers (auto)',
'markers': 'Markers',
'density': 'Density map'}
ScatterLayerState.points_mode.set_choices(self, ['auto', 'markers', 'density'])
ScatterLayerState.points_mode.set_display_func(self, points_mode_display.get)
self.add_callback('points_mode', self._update_density_map_mode)
ScatterLayerState.cmap_mode.set_choices(self, ['Fixed', 'Linear'])
ScatterLayerState.size_mode.set_choices(self, ['Fixed', 'Linear'])
linestyle_display = {'solid': '–––––––',
'dashed': '– – – – –',
'dotted': '· · · · · · · ·',
'dashdot': '– · – · – ·'}
ScatterLayerState.linestyle.set_choices(self, ['solid', 'dashed', 'dotted', 'dashdot'])
ScatterLayerState.linestyle.set_display_func(self, linestyle_display.get)
ScatterLayerState.vector_mode.set_choices(self, ['Cartesian', 'Polar'])
vector_origin_display = {'tail': 'Tail of vector',
'middle': 'Middle of vector',
'tip': 'Tip of vector'}
ScatterLayerState.vector_origin.set_choices(self, ['tail', 'middle', 'tip'])
ScatterLayerState.vector_origin.set_display_func(self, vector_origin_display.get)
stretch_display = {'linear': 'Linear',
'sqrt': 'Square Root',
'arcsinh': 'Arcsinh',
'log': 'Logarithmic'}
ScatterLayerState.stretch.set_choices(self, ['linear', 'sqrt', 'arcsinh', 'log'])
ScatterLayerState.stretch.set_display_func(self, stretch_display.get)
self.add_callback('layer', self._on_layer_change)
if layer is not None:
self._on_layer_change()
self.cmap = colormaps.members[0][1]
self.size = self.layer.style.markersize
self._sync_size = keep_in_sync(self, 'size', self.layer.style, 'markersize')
self.update_from_dict(kwargs)
class ScatterViewerState(MatplotlibDataViewerState):
"""
A state class that includes all the attributes for a scatter viewer.
"""
x_att = DDSCProperty(docstring='The attribute to show on the x-axis', default_index=0)
y_att = DDSCProperty(docstring='The attribute to show on the y-axis', default_index=1)
dpi = DDCProperty(72, docstring='The resolution (in dots per inch) of density maps, if present')
def __init__(self, **kwargs):
super(ScatterViewerState, self).__init__()
self.limits_cache = {}
self.x_lim_helper = StateAttributeLimitsHelper(self, attribute='x_att',
lower='x_min', upper='x_max',
log='x_log', margin=0.05,
limits_cache=self.limits_cache)
self.y_lim_helper = StateAttributeLimitsHelper(self, attribute='y_att',
lower='y_min', upper='y_max',
log='y_log', margin=0.05,
limits_cache=self.limits_cache)
self.add_callback('layers', self._layers_changed)
self.x_att_helper = ComponentIDComboHelper(self, 'x_att', pixel_coord=True, world_coord=True)
self.y_att_helper = ComponentIDComboHelper(self, 'y_att', pixel_coord=True, world_coord=True)
self.update_from_dict(kwargs)
self.add_callback('x_log', self._reset_x_limits)
self.add_callback('y_log', self._reset_y_limits)
def _reset_x_limits(self, *args):
self.x_lim_helper.percentile = 100
self.x_lim_helper.update_values(force=True)
def _reset_y_limits(self, *args):
self.y_lim_helper.percentile = 100
self.y_lim_helper.update_values(force=True)
def reset_limits(self):
self._reset_x_limits()
self._reset_y_limits()
def flip_x(self):
"""
Flip the x_min/x_max limits.
"""
self.x_lim_helper.flip_limits()
def flip_y(self):
"""
Flip the y_min/y_max limits.
"""
self.y_lim_helper.flip_limits()
@property
def x_categories(self):
return self._categories(self.x_att)
@property
def y_categories(self):
return self._categories(self.y_att)
def _categories(self, cid):
categories = []
for layer_state in self.layers:
if isinstance(layer_state.layer, BaseData):
layer = layer_state.layer
else:
layer = layer_state.layer.data
try:
if layer.data.get_kind(cid) == 'categorical':
categories.append(layer.data.get_data(cid).categories)
except IncompatibleAttribute:
pass
if len(categories) == 0:
return None
else:
return np.unique(np.hstack(categories))
@property
def x_kinds(self):
return self._component_kinds(self.x_att)
@property
def y_kinds(self):
return self._component_kinds(self.y_att)
def _component_kinds(self, cid):
# Construct list of component kinds over all layers
kinds = set()
for layer_state in self.layers:
if isinstance(layer_state.layer, BaseData):
layer = layer_state.layer
else:
layer = layer_state.layer.data
try:
kinds.add(layer.data.get_kind(cid))
except IncompatibleAttribute:
pass
return kinds
def _layers_changed(self, *args):
layers_data = self.layers_data
layers_data_cache = getattr(self, '_layers_data_cache', [])
if layers_data == layers_data_cache:
return
self.x_att_helper.set_multiple_data(self.layers_data)
self.y_att_helper.set_multiple_data(self.layers_data)
self._layers_data_cache = layers_data
class ScatterLayerState(MatplotlibLayerState):
"""
A state class that includes all the attributes for layers in a scatter plot.
"""
# General properties
style = DDSCProperty(docstring="The layer style")
size = DDCProperty(docstring="The size of the markers")
# Scatter layer
cmap_mode = DDSCProperty(docstring="Whether to use color to encode an attribute")
cmap_att = DDSCProperty(docstring="The attribute to use for the color")
cmap_vmin = DDCProperty(docstring="The lower level for the colormap")
cmap_vmax = DDCProperty(docstring="The upper level for the colormap")
cmap = DDCProperty(docstring="The colormap to use (when in colormap mode)")
size_mode = DDSCProperty(docstring="Whether to use size to encode an attribute")
size_att = DDSCProperty(docstring="The attribute to use for the size")
size_vmin = DDCProperty(docstring="The lower level for the size mapping")
size_vmax = DDCProperty(docstring="The upper level for the size mapping")
size_scaling = DDCProperty(1, docstring="Relative scaling of the size")
xerr_visible = DDCProperty(False, docstring="Whether to show x error bars")
yerr_visible = DDCProperty(False, docstring="Whether to show y error bars")
xerr_att = DDSCProperty(docstring="The attribute to use for the x error bars")
yerr_att = DDSCProperty(docstring="The attribute to use for the y error bars")
# Line plot layer
linewidth = DDCProperty(1, docstring="The line width")
linestyle = DDSCProperty(docstring="The line style")
def __init__(self, viewer_state=None, layer=None, **kwargs):
super(ScatterLayerState, self).__init__(viewer_state=viewer_state, layer=layer)
self.limits_cache = {}
self.cmap_lim_helper = StateAttributeLimitsHelper(self, attribute='cmap_att',
lower='cmap_vmin', upper='cmap_vmax',
limits_cache=self.limits_cache)
self.size_lim_helper = StateAttributeLimitsHelper(self, attribute='size_att',
lower='size_vmin', upper='size_vmax',
limits_cache=self.limits_cache)
self.cmap_att_helper = ComponentIDComboHelper(self, 'cmap_att',
numeric=True, categorical=False)
self.size_att_helper = ComponentIDComboHelper(self, 'size_att',
numeric=True, categorical=False)
self.xerr_att_helper = ComponentIDComboHelper(self, 'xerr_att',
numeric=True, categorical=False)
self.yerr_att_helper = ComponentIDComboHelper(self, 'yerr_att',
numeric=True, categorical=False)
ScatterLayerState.style.set_choices(self, ['Scatter', 'Line'])
ScatterLayerState.cmap_mode.set_choices(self, ['Fixed', 'Linear'])
ScatterLayerState.size_mode.set_choices(self, ['Fixed', 'Linear'])
linestyle_display = {'solid': '–––––––',
'dashed': '– – – – –',
'dotted': '· · · · · · · ·',
'dashdot': '– · – · – ·'}
ScatterLayerState.linestyle.set_choices(self, ['solid', 'dashed', 'dotted', 'dashdot'])
ScatterLayerState.linestyle.set_display_func(self, linestyle_display.get)
self.add_callback('layer', self._on_layer_change)
if layer is not None:
self._on_layer_change()
self.cmap = colormaps.members[0][1]
self.size = self.layer.style.markersize
self._sync_size = keep_in_sync(self, 'size', self.layer.style, 'markersize')
self.update_from_dict(kwargs)
def _on_layer_change(self, layer=None):
with delay_callback(self, 'cmap_vmin', 'cmap_vmax', 'size_vmin', 'size_vmax'):
if self.layer is None:
self.cmap_att_helper.set_multiple_data([])
self.size_att_helper.set_multiple_data([])
else:
self.cmap_att_helper.set_multiple_data([self.layer])
self.size_att_helper.set_multiple_data([self.layer])
if self.layer is None:
self.xerr_att_helper.set_multiple_data([])
self.yerr_att_helper.set_multiple_data([])
else:
self.xerr_att_helper.set_multiple_data([self.layer])
self.yerr_att_helper.set_multiple_data([self.layer])
def flip_cmap(self):
"""
Flip the cmap_vmin/cmap_vmax limits.
"""
self.cmap_lim_helper.flip_limits()
def flip_size(self):
"""
Flip the size_vmin/size_vmax limits.
"""
self.size_lim_helper.flip_limits()
class ScatterLayerState(MatplotlibLayerState):
"""
A state class that includes all the attributes for layers in a scatter plot.
"""
# Color
cmap_mode = DDSCProperty(docstring="Whether to use color to encode an attribute")
cmap_att = DDSCProperty(docstring="The attribute to use for the color")
cmap_vmin = DDCProperty(docstring="The lower level for the colormap")
cmap_vmax = DDCProperty(docstring="The upper level for the colormap")
cmap = DDCProperty(docstring="The colormap to use (when in colormap mode)")
# Points
points_mode = DDSCProperty(docstring='Whether to use markers or a density map')
# Markers
markers_visible = DDCProperty(True, docstring="Whether to show markers")
size = DDCProperty(docstring="The size of the markers")
size_mode = DDSCProperty(docstring="Whether to use size to encode an attribute")
size_att = DDSCProperty(docstring="The attribute to use for the size")
size_vmin = DDCProperty(docstring="The lower level for the size mapping")
size_vmax = DDCProperty(docstring="The upper level for the size mapping")
size_scaling = DDCProperty(1, docstring="Relative scaling of the size")
fill = DDCProperty(True, docstring="Whether to fill the markers")
# Density map
density_map = DDCProperty(False, docstring="Whether to show the points as a density map")
stretch = DDSCProperty(default='log', docstring='The stretch used to render the layer, '
'which should be one of ``linear``, '
'``sqrt``, ``log``, or ``arcsinh``')
density_contrast = DDCProperty(1, docstring="The dynamic range of the density map")
# Note that we keep the dpi in the viewer state since we want it to always
# be in sync between layers.
# Line
line_visible = DDCProperty(False, docstring="Whether to show a line connecting all positions")
linewidth = DDCProperty(1, docstring="The line width")
linestyle = DDSCProperty(docstring="The line style")
# Errorbars
xerr_visible = DDCProperty(False, docstring="Whether to show x error bars")
yerr_visible = DDCProperty(False, docstring="Whether to show y error bars")
xerr_att = DDSCProperty(docstring="The attribute to use for the x error bars")
yerr_att = DDSCProperty(docstring="The attribute to use for the y error bars")
# Vectors
vector_visible = DDCProperty(False, docstring="Whether to show vector plot")
vx_att = DDSCProperty(docstring="The attribute to use for the x vector arrow")
vy_att = DDSCProperty(docstring="The attribute to use for the y vector arrow")
vector_arrowhead = DDCProperty(False, docstring="Whether to show vector arrow")
vector_mode = DDSCProperty(default_index=0, docstring="Whether to plot the vectors in cartesian or polar mode")
vector_origin = DDSCProperty(default_index=1, docstring="Whether to place the vector so that the origin is at the tail, middle, or tip")
vector_scaling = DDCProperty(1, docstring="The relative scaling of the arrow length")
def __init__(self, viewer_state=None, layer=None, **kwargs):
super(ScatterLayerState, self).__init__(viewer_state=viewer_state, layer=layer)
self.limits_cache = {}
self.cmap_lim_helper = StateAttributeLimitsHelper(self, attribute='cmap_att',
lower='cmap_vmin', upper='cmap_vmax',
limits_cache=self.limits_cache)
self.size_lim_helper = StateAttributeLimitsHelper(self, attribute='size_att',
lower='size_vmin', upper='size_vmax',
limits_cache=self.limits_cache)
self.cmap_att_helper = ComponentIDComboHelper(self, 'cmap_att',
numeric=True, categorical=False)
self.size_att_helper = ComponentIDComboHelper(self, 'size_att',
numeric=True, categorical=False)
self.xerr_att_helper = ComponentIDComboHelper(self, 'xerr_att',
numeric=True, categorical=False)
self.yerr_att_helper = ComponentIDComboHelper(self, 'yerr_att',
numeric=True, categorical=False)
self.vx_att_helper = ComponentIDComboHelper(self, 'vx_att',
numeric=True, categorical=False)
self.vy_att_helper = ComponentIDComboHelper(self, 'vy_att',
numeric=True, categorical=False)
points_mode_display = {'auto': 'Density map or markers (auto)',
'markers': 'Markers',
'density': 'Density map'}
ScatterLayerState.points_mode.set_choices(self, ['auto', 'markers', 'density'])
ScatterLayerState.points_mode.set_display_func(self, points_mode_display.get)
self.add_callback('points_mode', self._update_density_map_mode)
ScatterLayerState.cmap_mode.set_choices(self, ['Fixed', 'Linear'])
ScatterLayerState.size_mode.set_choices(self, ['Fixed', 'Linear'])
linestyle_display = {'solid': '–––––––',
'dashed': '– – – – –',
'dotted': '· · · · · · · ·',
'dashdot': '– · – · – ·'}
ScatterLayerState.linestyle.set_choices(self, ['solid', 'dashed', 'dotted', 'dashdot'])
ScatterLayerState.linestyle.set_display_func(self, linestyle_display.get)
ScatterLayerState.vector_mode.set_choices(self, ['Cartesian', 'Polar'])
vector_origin_display = {'tail': 'Tail of vector',
'middle': 'Middle of vector',
'tip': 'Tip of vector'}
ScatterLayerState.vector_origin.set_choices(self, ['tail', 'middle', 'tip'])
ScatterLayerState.vector_origin.set_display_func(self, vector_origin_display.get)
stretch_display = {'linear': 'Linear',
'sqrt': 'Square Root',
'arcsinh': 'Arcsinh',
'log': 'Logarithmic'}
ScatterLayerState.stretch.set_choices(self, ['linear', 'sqrt', 'arcsinh', 'log'])
ScatterLayerState.stretch.set_display_func(self, stretch_display.get)
self.add_callback('layer', self._on_layer_change)
if layer is not None:
self._on_layer_change()
self.cmap = colormaps.members[0][1]
self.size = self.layer.style.markersize
self._sync_size = keep_in_sync(self, 'size', self.layer.style, 'markersize')
self.update_from_dict(kwargs)
def _on_layer_change(self, layer=None):
with delay_callback(self, 'cmap_vmin', 'cmap_vmax', 'size_vmin', 'size_vmax', 'density_map'):
self._update_density_map_mode()
if self.layer is None:
self.cmap_att_helper.set_multiple_data([])
self.size_att_helper.set_multiple_data([])
else:
self.cmap_att_helper.set_multiple_data([self.layer])
self.size_att_helper.set_multiple_data([self.layer])
if self.layer is None:
self.xerr_att_helper.set_multiple_data([])
self.yerr_att_helper.set_multiple_data([])
else:
self.xerr_att_helper.set_multiple_data([self.layer])
self.yerr_att_helper.set_multiple_data([self.layer])
if self.layer is None:
self.vx_att_helper.set_multiple_data([])
self.vy_att_helper.set_multiple_data([])
else:
self.vx_att_helper.set_multiple_data([self.layer])
self.vy_att_helper.set_multiple_data([self.layer])
def _update_density_map_mode(self, *args):
if self.points_mode == 'auto':
if self.layer.size > 100000:
self.density_map = True
else:
self.density_map = False
elif self.points_mode == 'density':
self.density_map = True
else:
self.density_map = False
def flip_cmap(self):
"""
Flip the cmap_vmin/cmap_vmax limits.
"""
self.cmap_lim_helper.flip_limits()
def flip_size(self):
"""
Flip the size_vmin/size_vmax limits.
"""
self.size_lim_helper.flip_limits()
@property
def cmap_name(self):
return colormaps.name_from_cmap(self.cmap)
@classmethod
def __setgluestate__(cls, rec, context):
# Patch for glue files produced with glue v0.11
if 'style' in rec['values']:
style = context.object(rec['values'].pop('style'))
if style == 'Scatter':
rec['values']['markers_visible'] = True
rec['values']['line_visible'] = False
elif style == 'Line':
rec['values']['markers_visible'] = False
rec['values']['line_visible'] = True
return super(ScatterLayerState, cls).__setgluestate__(rec, context)
class ScatterViewerState(MatplotlibDataViewerState):
"""
A state class that includes all the attributes for a scatter viewer.
"""
x_att = DDSCProperty(docstring='The attribute to show on the x-axis', default_index=0)
y_att = DDSCProperty(docstring='The attribute to show on the y-axis', default_index=1)
def __init__(self, **kwargs):
super(ScatterViewerState, self).__init__()
self.limits_cache = {}
self.x_lim_helper = StateAttributeLimitsHelper(self, attribute='x_att',
lower='x_min', upper='x_max',
log='x_log',
limits_cache=self.limits_cache)
self.y_lim_helper = StateAttributeLimitsHelper(self, attribute='y_att',
lower='y_min', upper='y_max',
log='y_log',
limits_cache=self.limits_cache)
self.add_callback('layers', self._layers_changed)
self.x_att_helper = ComponentIDComboHelper(self, 'x_att')
self.y_att_helper = ComponentIDComboHelper(self, 'y_att')
self.update_from_dict(kwargs)
def _update_priority(self, name):
if name == 'layers':
return 2
elif name.endswith('_log'):
return 0.5
elif name.endswith(('_min', '_max')):
return 0
else:
return 1
def flip_x(self):
"""
Flip the x_min/x_max limits.
"""
self.x_lim_helper.flip_limits()
def flip_y(self):
"""
Flip the y_min/y_max limits.
"""
self.y_lim_helper.flip_limits()
def _get_x_components(self):
return self._get_components(self.x_att)
def _get_y_components(self):
return self._get_components(self.y_att)
def _get_components(self, cid):
# Construct list of components over all layers
components = []
for layer_state in self.layers:
if isinstance(layer_state.layer, Data):
layer = layer_state.layer
else:
layer = layer_state.layer.data
try:
components.append(layer.data.get_component(cid))
except IncompatibleAttribute:
pass
return components
def _layers_changed(self, *args):
layers_data = self.layers_data
layers_data_cache = getattr(self, '_layers_data_cache', [])
if layers_data == layers_data_cache:
return
self.x_att_helper.set_multiple_data(self.layers_data)
self.y_att_helper.set_multiple_data(self.layers_data)
self._layers_data_cache = layers_data
class HistogramViewerState(MatplotlibDataViewerState):
"""
A state class that includes all the attributes for a histogram viewer.
"""
x_att = DDSCProperty(docstring='The attribute to compute the histograms for')
cumulative = DDCProperty(False, docstring='Whether to show the histogram as '
'a cumulative histogram')
normalize = DDCProperty(False, docstring='Whether to normalize the histogram '
'(based on the total sum)')
hist_x_min = DDCProperty(docstring='The minimum value used to compute the '
'histogram')
hist_x_max = DDCProperty(docstring='The maxumum value used to compute the '
'histogram')
hist_n_bin = DDCProperty(docstring='The number of bins in the histogram')
common_n_bin = DDCProperty(True, docstring='The number of bins to use for '
'all numerical components')
def __init__(self, **kwargs):
super(HistogramViewerState, self).__init__()
self.hist_helper = StateAttributeHistogramHelper(self, 'x_att', lower='hist_x_min',
upper='hist_x_max', n_bin='hist_n_bin',
common_n_bin='common_n_bin')
self.x_lim_helper = StateAttributeLimitsHelper(self, 'x_att', lower='x_min',
upper='x_max', log='x_log')
self.add_callback('layers', self._layers_changed)
self.x_att_helper = ComponentIDComboHelper(self, 'x_att',
pixel_coord=True, world_coord=True)
self.update_from_dict(kwargs)
# This should be added after update_from_dict since we don't want to
# influence the restoring of sessions.
self.add_callback('hist_x_min', self.update_view_to_bins)
self.add_callback('hist_x_max', self.update_view_to_bins)
self.add_callback('x_log', self._reset_x_limits, priority=1000)
def _reset_x_limits(self, *args):
with delay_callback(self, 'hist_x_min', 'hist_x_max', 'x_min', 'x_max', 'x_log'):
self.x_lim_helper.percentile = 100
self.x_lim_helper.update_values(force=True)
self.update_bins_to_view()
def reset_limits(self):
self._reset_x_limits()
self.y_min = min(getattr(layer, '_y_min', np.inf) for layer in self.layers)
self.y_max = max(getattr(layer, '_y_max', 0) for layer in self.layers)
def _update_priority(self, name):
if name == 'layers':
return 2
elif name.endswith('_log'):
return 0.5
elif name.endswith(('_min', '_max', '_bin')):
return 0
else:
return 1
def flip_x(self):
"""
Flip the x_min/x_max limits.
"""
self.x_lim_helper.flip_limits()
@avoid_circular
def update_bins_to_view(self, *args):
"""
Update the bins to match the current view.
"""
with delay_callback(self, 'hist_x_min', 'hist_x_max'):
if self.x_max > self.x_min:
self.hist_x_min = self.x_min
self.hist_x_max = self.x_max
else:
self.hist_x_min = self.x_max
self.hist_x_max = self.x_min
@avoid_circular
def update_view_to_bins(self, *args):
"""
Update the view to match the histogram interval
"""
with delay_callback(self, 'x_min', 'x_max'):
self.x_min = self.hist_x_min
self.x_max = self.hist_x_max
def _get_x_components(self):
if self.x_att is None:
return []
# Construct list of components over all layers
components = []
for layer_state in self.layers:
if isinstance(layer_state.layer, Data):
layer = layer_state.layer
else:
layer = layer_state.layer.data
try:
components.append(layer.get_component(self.x_att))
except IncompatibleAttribute:
pass
return components
@property
def bins(self):
"""
The position of the bins for the histogram based on the current state.
"""
if self.hist_x_min is None or self.hist_x_max is None or self.hist_n_bin is None:
return None
if self.x_log:
return np.logspace(np.log10(self.hist_x_min),
np.log10(self.hist_x_max),
self.hist_n_bin + 1)
elif isinstance(self.hist_x_min, np.datetime64):
x_min = self.hist_x_min.astype(int)
x_max = self.hist_x_max.astype(self.hist_x_min.dtype).astype(int)
return np.linspace(x_min, x_max, self.hist_n_bin + 1).astype(self.hist_x_min.dtype)
else:
return np.linspace(self.hist_x_min, self.hist_x_max,
self.hist_n_bin + 1)
@defer_draw
def _layers_changed(self, *args):
self.x_att_helper.set_multiple_data(self.layers_data)
