def __init__( self, aGtkWindow ):
self.theGtkWindow = gtk.Window()
self.theGdkWindow = self.theGtkWindow.window
self.theColorMap = self.theGtkWindow.get_colormap()
self.theStyle = self.theGtkWindow.get_style()
self.testCanvas = gnomecanvas.Canvas()
self.testCanvasRoot = self.testCanvas.root()
self.testText=self.testCanvasRoot.add(gnomecanvas.CanvasText, text = 'Hello', font="Sans 9" )
self.opMatrix= n.array(((0,0,1,0,-1,0,0,0),(-1,0,0,0,0,0,1,0),(0,0,0,1,0,-1,0,0),(0,-1,0,0,0,0,0,1)))
#for overlapping
self.o1=n.array([[0,0,-1,0],[1,0,0,0],[0,0,0,-1],[0,1,0,0]])
self.o2=n.array([[1,0,0,0],[0,0,-1,0],[0,1,0,0],[0,0,0,-1]])
#for within
self.o3=n.array([[-1,0,0,0],[0,0,1,0],[0,-1,0,0],[0,0,0,1]])
self.o4=n.array([[1,0,0,0],[0,0,-1,0],[0,1,0,0],[0,0,0,-1]])
#for resizing (x1,y1,x2,y2)
self.resizeMap= {}
self.mapPos={DIRECTION_LEFT:n.array([[-1,0],[0,0],[0,0],[0,0]]),
DIRECTION_RIGHT:n.array([[0,0],[0,0],[1,0],[0,0]]),
DIRECTION_UP:n.array([[0,0],[0,-1],[0,0],[0,0]]),
DIRECTION_DOWN:n.array([[0,0],[0,0],[0,0],[0,1]]),
DIRECTION_BOTTOM_RIGHT:n.array([[0,0],[0,0],[1,0],[0,1]]),
DIRECTION_BOTTOM_LEFT:n.array([[-1,0],[0,0],[0,0],[0,1]]),
DIRECTION_TOP_RIGHT:n.array([[0,0],[0,-1],[1,0],[0,0]]),
DIRECTION_TOP_LEFT:n.array([[-1,0],[0,-1],[0,0],[0,0]])}
self.mapNeg={DIRECTION_LEFT:n.array([[1,0],[0,0],[0,0],[0,0]]),
DIRECTION_RIGHT:n.array([[0,0],[0,0],[-1,0],[0,0]]),
DIRECTION_UP:n.array([[0,0],[0,1],[0,0],[0,0]]),
DIRECTION_DOWN:n.array([[0,0],[0,0],[0,0],[0,-1]]),
DIRECTION_BOTTOM_RIGHT:n.array([[0,0],[0,0],[-1,0],[0,-1]]),
DIRECTION_BOTTOM_LEFT:n.array([[1,0],[0,0],[0,0],[0,-1]]),
DIRECTION_TOP_RIGHT:n.array([[0,0],[0,1],[-1,0],[0,0]]),
DIRECTION_TOP_LEFT:n.array([[1,0],[0,1],[0,0],[0,0]])}
#each point (x1,y1,x2,y2):[x1,y1,x2,y2,posx,posy,negx,negy]
self.twoRectMap={DIRECTION_BOTTOM_RIGHT:n.array([[[1,0,0,0,0,0,0,0],[0,0,0,1,0,0,0,-1],[0,0,1,0,1,0,0,0],[0,0,0,1,0,1,0,0]],[[0,0,1,0,0,0,-1,0],[0,1,0,0,0,0,0,0],[0,0,1,0,1,0,0,0],[0,0,0,1,0,1,0,0]]]),\
DIRECTION_BOTTOM_LEFT:n.array([[[1,0,0,0,-1,0,0,0],[0,0,0,1,0,0,0,-1],[0,0,1,0,0,0,0,0],[0,0,0,1,0,1,0,0]],[[1,0,0,0,-1,0,0,0],[0,1,0,0,0,0,0,0],[1,0,0,0,0,0,1,0],[0,0,0,1,0,1,0,0]]]),\
DIRECTION_TOP_RIGHT:n.array([[[1,0,0,0,0,0,0,0],[0,1,0,0,0,-1,0,0],[0,0,1,0,1,0,0,0],[0,1,0,0,0,0,0,1]],[[0,0,1,0,0,0,-1,0],[0,1,0,0,0,-1,0,0],[0,0,1,0,1,0,0,0],[0,0,0,1,0,0,0,0]]]),\
DIRECTION_TOP_LEFT:n.array([[[1,0,0,0,-1,0,0,0],[0,1,0,0,0,-1,0,0],[0,0,1,0,0,0,0,0],[0,1,0,0,0,0,0,1]],[[1,0,0,0,-1,0,0,0],[0,1,0,0,0,-1,0,0],[1,0,0,0,0,0,1,0],[0,0,0,1,0,0,0,0]]])}
self.dotRectMap={DIRECTION_LEFT:[0], DIRECTION_RIGHT:[2],DIRECTION_UP:[1],DIRECTION_DOWN:[3],
DIRECTION_BOTTOM_RIGHT:[2,3],DIRECTION_BOTTOM_LEFT:[0,3],DIRECTION_TOP_RIGHT:[2,1],
DIRECTION_TOP_LEFT:[0,1]}
def __init__(self, imagefiles=[]):
self.imagefiles = imagefiles
if (len(self.imagefiles) == 0):
self.INDEPENDENT = True
self.onOpen()
else:
self.INDEPENDENT = False
self.background = self.getAllThresh(self.imagefiles)
self.gladefile = "trackdots.glade"
self.wTree = gtk.glade.XML(self.gladefile, "window1")
self.window = self.wTree.get_widget("window1")
sigs = {
"on_ok_clicked": self.onOK,
"on_window1_destroy": self.onDestroy
}
self.wTree.signal_autoconnect(sigs)
self.statusbar = self.wTree.get_widget("statusbar1")
self.cbox = self.wTree.get_widget("canvashbox")
self.canvas = gnomecanvas.Canvas(aa=True)
img = cv.LoadImageM(self.background, iscolor=False)
self.csize = shape(img)
self.canvas.set_size_request(self.csize[1], self.csize[0])
self.canvas.set_scroll_region(0, 0, self.csize[1], self.csize[0])
self.cbox.add(self.canvas)
self.canvas.connect("event", self.canvas_event)
pixbuf = gtk.gdk.pixbuf_new_from_file(self.background)
bg = self.canvas.root().add(gnomecanvas.CanvasPixbuf,
x=0,
y=0,
pixbuf=pixbuf)
self.DRAG = False
self.pathtofiles = '/'.join(self.imagefiles[0].split('/')[:-1]) + '/'
self.Rectangles = []
self.RectanglePoints = []
for r in range(4):
self.Rectangles.append(self.get_rect(1, 1))
self.RectanglePoints.append([1, 1, 1, 1])
self.currentRect = 0
self.window.show_all()
self.context_id = self.statusbar.get_context_id("instructions")
text = "Select the rectangles for each dot"
self.statusbar.push(self.context_id, text)
def __init__(self, imagefiles, independent=True):
self.pathtofiles = '/'.join(imagefiles[0].split('/')[:-1]) + '/'
self.imagefiles = imagefiles
self.INDEPENDENT = independent
self.mouse_down = False
self.filenamesind = 0
self.close_enough = False
self.gladefile = "trackdots.glade"
self.wTree = gtk.glade.XML(self.gladefile, "HCView")
self.window = self.wTree.get_widget("HCView")
sigs = {
"on_tbNext_clicked": self.onNext,
"on_tbPrev_clicked": self.onPrev,
"on_HCView_destroy": self.onDestroy
}
self.wTree.signal_autoconnect(sigs)
self.hbox = self.wTree.get_widget("hbox2")
self.statusbar = self.wTree.get_widget("statusbar2")
img = cv.LoadImageM(self.imagefiles[0], iscolor=False)
self.csize = shape(img)
self.canvas = gnomecanvas.Canvas(aa=True)
self.canvas.set_size_request(self.csize[1], self.csize[0])
self.canvas.set_scroll_region(0, 0, self.csize[1], self.csize[0])
# Put it together
self.hbox.add(self.canvas)
self.window.set_resizable(False)
self.window.show_all()
self.canvas.connect("event", self.canvas_event)
self.DrawPoints(self.filenamesind)
def openWindow(self):
"""
in: nothing
returns nothing
"""
# superclass openwindow
ListWindow.openWindow(self)
# add signal handlers
canv = gnomecanvas.Canvas()
canv.show_all()
self['scrolledwindow1'].add(canv)
self.thePathwayCanvas = PathwayCanvas(self, canv)
self.theLayout.attachToCanvas(self.thePathwayCanvas)
self.addHandlers({
'on_zoom_in_button_clicked' : self.__zoom_in,\
'on_zoom_out_button_clicked' : self.__zoom_out,\
'on_zoom_to_fit_button_clicked' : self.__zoom_to_fit,\
'on_print_button_clicked' : self.__print,\
'on_selector_button_toggled' : self.__palette_toggled,\
'on_variable_button_toggled' : self.__palette_toggled, \
'on_system_button_toggled' : self.__palette_toggled,\
'on_process_button_toggled' : self.__palette_toggled,\
'on_text_button_toggled' : self.__palette_toggled,\
'on_layout_name_entry_activate' : self.__rename_layout,\
'on_layout_name_entry_editing_done' : self.__rename_layout,\
#'on_layout_name_entry_focus_out_event' : self.__rename_layout,
'on_delete_button_clicked': self.__DeleteLayoutButton_clicked,\
'on_clone_button_clicked': self.__CloneLayoutButton_clicked,\
'on_custom_button_toggled' : self.__palette_toggled,\
'on_search_entry_activate' : self.__search,\
'on_rename_button_clicked': self.__editLabel,\
'on_search_entry_editing_done' : self.__search })
self.theHBox = self['hbox7']
self.theLabel = self['layout_name_label']
self.theEntry = self['layout_name_entry']
self['top_frame'].remove(self.theHBox)
self.theHBox.remove(self.theEntry)
self.update()
#get Palette Button Widgets
selector = ListWindow.getWidget(self, 'selector_button')
selector.set_active(True)
variable = ListWindow.getWidget(self, 'variable_button')
process = ListWindow.getWidget(self, 'process_button')
system = ListWindow.getWidget(self, 'system_button')
custom = ListWindow.getWidget(self, 'custom_button')
text = ListWindow.getWidget(self, 'text_button')
self.zoomin = ListWindow.getWidget(self, 'zoom_in_button')
self.zoomout = ListWindow.getWidget(self, 'zoom_out_button')
self.zoomtofit = ListWindow.getWidget(self, 'zoom_to_fit_button')
self.theButtonDict = {
'selector': PE_SELECTOR,
'variable': PE_VARIABLE,
'process': PE_PROCESS,
'system': PE_SYSTEM,
'custom': PE_CUSTOM,
'text': PE_TEXT
}
self.thePaletteButtonDict = {
'selector': selector,
'variable': variable,
'process': process,
'system': system,
'custom': custom,
'text': text
}
self.theButtonKeys = self.thePaletteButtonDict.keys().sort()
# Sets the return PaletteButton value
self.__CurrPaletteButton = 'selector'
self.__PrevPaletteButton = None
self.isFirst = True
def __init__(self):
self.canvas = gnomecanvas.Canvas(aa=True)
def __init__(self, csvs, SHOW_LING, SHOW_NEUT, SHOW_WAVE, SHOW_SPEC):
filename = 'labelwindowbackground.png'
title = csvs[0]
thisdir = '/'.join(title.split('/')[:-1]) + '/'
t = nc.NeutralTongue(title, thisdir + 'neutral.csv', SHOW_LING,
SHOW_NEUT, SHOW_WAVE, SHOW_SPEC)
t.saveNcrop('labelwindowbackground.png')
numFrames = len(t.X)
t.win.destroy()
self.gladefile = "LinguaViewer.glade"
self.wTree = gtk.glade.XML(self.gladefile, "LabelWindow")
self.window = self.wTree.get_widget("LabelWindow")
self.window.connect('destroy', self.onDestroy)
self.window.set_title(title)
self.numFrames = numFrames
self.title = title
self.static_dir = os.getcwd() + '/'
self.wavname = title[:-4] + ".wav"
dic = {
"on_tbSave1_clicked": self.onSave,
"on_tbPlay1_clicked": self.playSound,
"on_entry1_activate": self.updateText
}
self.wTree.signal_autoconnect(dic)
self.textentry = self.wTree.get_widget("entry1")
self.dorsumentry = self.wTree.get_widget("entry2")
self.tipentry = self.wTree.get_widget("entry3")
self.statusbar = self.wTree.get_widget("statusbar3")
self.vbox = self.wTree.get_widget("hbox4")
self.canvas = gnomecanvas.Canvas(aa=True)
self.vbox.add(self.canvas)
self.window.set_resizable(False)
self.window.show_all()
self.canvas.connect("event", self.canvas_event)
#add a bit of whitespace to the image to put the text labels
cmd = ['convert', '-size', '600x75', 'xc:white', 'white.png']
proc = subprocess.Popen(cmd)
status = proc.wait()
cmd = [
'montage', 'white.png', filename, '-mode', 'Concatenate', '-tile',
'1x', 'canvas.png'
]
proc = subprocess.Popen(cmd)
status = proc.wait()
pixbuf = gtk.gdk.pixbuf_new_from_file('canvas.png')
itemType = gnomecanvas.CanvasPixbuf
self.background = self.canvas.root().add(itemType,
x=0,
y=0,
pixbuf=pixbuf)
self.width = pixbuf.get_width()
self.height = pixbuf.get_height()
#self.textview.set_size_request(self.width, 100)
self.canvas.set_size_request(self.width, self.height)
self.canvas.set_scroll_region(0, 0, self.width, self.height)
#set the border lines
self.leftedge = 75.0
self.rightedge = 540.0
self.canvas.root().add(gnomecanvas.CanvasLine, points=[self.leftedge, self.height, self.leftedge, 0], \
fill_color_rgba=0x000000FF, width_units=1.0)
self.canvas.root().add(gnomecanvas.CanvasLine, points=[self.rightedge, self.height, self.rightedge, 0], \
fill_color_rgba=0x000000FF, width_units=1.0)
#add a divider between the label portion and the image
self.canvas.root().add(gnomecanvas.CanvasLine, points=[self.leftedge, 76.0, self.rightedge, 76.0], \
fill_color_rgba=0x00000099, width_units=1.0)
self.canvas.root().add(gnomecanvas.CanvasText, x=35, y=35, text="Label", fill_color_rgba=0x000000FF, \
justification=gtk.JUSTIFY_CENTER)
self.dragging = False
self.previous_value = False
self.boundaries = []
self.boundary_values = []
self.label_limit = 99
self.label_text = []
self.label_centers = []
self.labels = []
for i in range(self.label_limit):
self.label_text.append('')
self.label_centers.append(i + 75)
self.labels.append(self.canvas.root().add(gnomecanvas.CanvasText, x=self.label_centers[i], y=35, \
text=self.label_text[i], fill_color_rgba=0x000000FF, justification=gtk.JUSTIFY_CENTER))
self.intervals = [[self.leftedge, self.rightedge]]
self.selected_interval = 0
self.sorted_boundaries = [self.leftedge, self.rightedge]
self.selected_mask = None
self.loadLabel()
def __init__(self):
self.onOpen()
self.wTree = gtk.glade.XML("roi.glade", "window1")
self.window = self.wTree.get_widget("window1")
sigs = {"on_window1_destroy" : gtk.main_quit,
"on_button1_clicked" : self.onSave,
"on_button2_clicked" : self.onReset,
"on_topentry_activate" : self.resetByText,
"on_bottomentry_activate" : self.resetByText,
"on_leftentry_activate" : self.resetByText,
"on_rightentry_activate" : self.resetByText}
self.wTree.signal_autoconnect(sigs)
self.statusbar = self.wTree.get_widget("statusbar1")
self.machineCBox = self.wTree.get_widget("combobox1")
self.machineCBox.set_active(-1) #initialize as "UNKNOWN"
self.topentry = self.wTree.get_widget("topentry")
self.bottomentry = self.wTree.get_widget("bottomentry")
self.leftentry = self.wTree.get_widget("leftentry")
self.rightentry = self.wTree.get_widget("rightentry")
self.cbox = self.wTree.get_widget("canvashbox")
self.canvas = gnomecanvas.Canvas(aa=True)
#open an image to see the size
img = cv.LoadImageM(self.datafiles[0], iscolor=False)
self.csize = shape(img)
self.canvas.set_size_request(self.csize[1], self.csize[0])
self.canvas.set_scroll_region(0, 0, self.csize[1], self.csize[0])
self.cbox.add(self.canvas)
self.canvas.connect("event", self.canvas_event)
self.DRAG = False
self.pathtofiles = '/'.join(self.datafiles[0].split('/')[:-1]) + '/'
#Read ROI_config.txt if it exists
#self.config = os.path.join(self.pathtofiles, 'ROI_config.txt')
self.config = 'ROI_config.txt'
#if (os.path.isfile(self.config)):
if os.path.isfile(os.path.join(self.pathtofiles, self.config)):
c = open(self.config, 'r').readlines()
self.top = int(c[1][:-1].split('\t')[1])
self.bottom = int(c[2][:-1].split('\t')[1])
self.left = int(c[3][:-1].split('\t')[1])
self.right = int(c[4][:-1].split('\t')[1])
else:
self.top = 140 #default settings for the Sonosite Titan
self.bottom = 320
self.left = 250
self.right = 580
self.getSumImage()
pixbuf = gtk.gdk.pixbuf_new_from_file(self.pathtofiles+'SumImage.png')
self.background = self.canvas.root().add(gnomecanvas.CanvasPixbuf, x=0, y=0, pixbuf=pixbuf)
self.reset()
subprocess.Popen(['rm', self.pathtofiles+'SumImage.png'])
self.window.show_all()
def __init__(self, filenames, tracerinfo):
# Create window
self.gladefile = "LinguaViewer.glade"
self.wTree = gtk.glade.XML(self.gladefile, "PGLite")
self.window = self.wTree.get_widget("PGLite")
self.window.connect('destroy', self.onDestroy)
self.filenamesind = 0
self.filenames = filenames
self.interpolated = []
for i in self.filenames:
self.interpolated.append(False)
#self.interpolated.append(True)
self.tracercode = tracerinfo #for new files
self.get_tracenames() #for existing files
self.bootstrapList = []
self.bootstrapCounter = 0
self.bootstrapDisplay = self.wTree.get_widget("bootstrapentry")
self.hbox = self.wTree.get_widget("hbox2")
self.statusbar = self.wTree.get_widget("statusbar2")
# Create 720x480 antialised drawing canvas
img = cv.LoadImageM(filenames[0], iscolor=False)
self.csize = shape(img)
self.canvas = gnomecanvas.Canvas(aa=True)
self.canvas.set_size_request(self.csize[1], self.csize[0])
self.canvas.set_scroll_region(0, 0, self.csize[1], self.csize[0])
# Put it together
self.hbox.add(self.canvas)
self.window.set_resizable(False)
self.window.show_all()
self.pathtofiles = '/'.join(self.filenames[0].split('/')[:-1]) + '/'
self.config = self.pathtofiles + 'ROI_config.txt'
print self.config
if (os.path.isfile(self.config)):
print "Found ROI_config.txt"
c = open(self.config, 'r').readlines()
self.machine = c[0][:-1].split('\t')[1]
if self.machine == '':
self.machine = 'Sonosite Titan'
print "Using machine: " + self.machine
else:
self.machine = 'Sonosite Titan' #default
# Add new grid definitions here and in the glade file roi.glade
self.machineOptions = {
'Sonosite Titan': [[115., 167., 357., 392.],
[421., 172., 667., 392.]],
'Toshiba': [[155., 187., 286., 437.], [432., 187., 575., 437.]]
}
# Event Handling
dic = {
"on_tbGrid_clicked": self.on_set_grid,
"on_tbNext_clicked": self.nextImage,
"on_tbPrev_clicked": self.prevImage,
"on_tbBoot_clicked": self.add_to_bootstrap_list
}
self.wTree.signal_autoconnect(dic)
self.canvas.connect("event", self.canvas_event)
self.dragging = False
self.tracing = False
self.delete_points = False
self.options = {
'set_grid': self.set_grid,
'trace_contour': self.trace_contour
}
self.SET_GRID = False
self.GRID_EXISTS = False
self.numGridLines = 32
self.gridCount = 0
self.DrawPoints(0)