def _plt_gogrouped(self, goids, go2color_usr, **kws): """Plot grouped GO IDs.""" fout_img = self.get_outfile(kws['outfile'], goids) sections = read_sections(kws['sections'], exclude_ungrouped=True) print("KWWSSSSSSSS", kws) # kws_plt = {k:v for k, v in kws.items if k in self.kws_plt} grprobj_cur = self._get_grprobj(goids, sections) # GO: purple=hdr-only, green=hdr&usr, yellow=usr-only # BORDER: Black=hdr Blu=hdr&usr grpcolor = GrouperColors( grprobj_cur) # get_bordercolor get_go2color_users grp_go2color = grpcolor.get_go2color_users() grp_go2bordercolor = grpcolor.get_bordercolor() for goid, color in go2color_usr.items(): grp_go2color[goid] = color objcolor = Go2Color(self.gosubdag, objgoea=None, go2color=grp_go2color, go2bordercolor=grp_go2bordercolor) go2txt = GrouperPlot.get_go2txt(grprobj_cur, grp_go2color, grp_go2bordercolor) objplt = GoSubDagPlot(self.gosubdag, Go2Color=objcolor, go2txt=go2txt, **kws) objplt.prt_goids(sys.stdout) objplt.plt_dag(fout_img) sys.stdout.write("{N:>6} sections read\n".format( N="NO" if sections is None else len(sections))) return fout_img
def _plt_gosubdag(self, goids, go2color, **kws): """Plot GO IDs.""" fout_img = self.get_outfile(kws['outfile'], goids) objcolor = Go2Color(self.gosubdag, objgoea=None, go2color=go2color) objplt = GoSubDagPlot(self.gosubdag, Go2Color=objcolor, **kws) objplt.prt_goids(sys.stdout) objplt.plt_dag(fout_img) return fout_img
def _plt_gosubdag(self, goids, go2color, **kws): """Plot GO IDs.""" print("PLOTTING KWS", kws) fout_img = self.get_outfile(kws['outfile'], goids, 'relationship' in kws) objcolor = Go2Color(self.gosubdag, objgoea=None, go2color=go2color) print("kws:") print(kws) objplt = GoSubDagPlot(self.gosubdag, Go2Color=objcolor, **kws) objplt.prt_goids(sys.stdout) objplt.plt_dag(fout_img) return fout_img