def _plt_gogrouped(self, goids, go2color_usr, **kws):
"""Plot grouped GO IDs."""
fout_img = self.get_outfile(kws['outfile'], goids)
sections = read_sections(kws['sections'], exclude_ungrouped=True)
print("KWWSSSSSSSS", kws)
# kws_plt = {k:v for k, v in kws.items if k in self.kws_plt}
grprobj_cur = self._get_grprobj(goids, sections)
# GO: purple=hdr-only, green=hdr&usr, yellow=usr-only
# BORDER: Black=hdr Blu=hdr&usr
grpcolor = GrouperColors(
grprobj_cur) # get_bordercolor get_go2color_users
grp_go2color = grpcolor.get_go2color_users()
grp_go2bordercolor = grpcolor.get_bordercolor()
for goid, color in go2color_usr.items():
grp_go2color[goid] = color
objcolor = Go2Color(self.gosubdag,
objgoea=None,
go2color=grp_go2color,
go2bordercolor=grp_go2bordercolor)
go2txt = GrouperPlot.get_go2txt(grprobj_cur, grp_go2color,
grp_go2bordercolor)
objplt = GoSubDagPlot(self.gosubdag,
Go2Color=objcolor,
go2txt=go2txt,
**kws)
objplt.prt_goids(sys.stdout)
objplt.plt_dag(fout_img)
sys.stdout.write("{N:>6} sections read\n".format(
N="NO" if sections is None else len(sections)))
return fout_img
def _plt_gosubdag(self, goids, go2color, **kws):
"""Plot GO IDs."""
fout_img = self.get_outfile(kws['outfile'], goids)
objcolor = Go2Color(self.gosubdag, objgoea=None, go2color=go2color)
objplt = GoSubDagPlot(self.gosubdag, Go2Color=objcolor, **kws)
objplt.prt_goids(sys.stdout)
objplt.plt_dag(fout_img)
return fout_img
def _plt_gosubdag(self, goids, go2color, **kws):
"""Plot GO IDs."""
print("PLOTTING KWS", kws)
fout_img = self.get_outfile(kws['outfile'], goids, 'relationship' in kws)
objcolor = Go2Color(self.gosubdag, objgoea=None, go2color=go2color)
print("kws:")
print(kws)
objplt = GoSubDagPlot(self.gosubdag, Go2Color=objcolor, **kws)
objplt.prt_goids(sys.stdout)
objplt.plt_dag(fout_img)
return fout_img