# copyright and license terms.
#
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import argparse as arg
import os
import logging
import sys
sys.path.insert(
1,
'/group_shares/PSYCH/code/development/pipelines/HCP_NHP_generic/src/gradient_unwarping'
)
from gradunwarp.core import (globals, coeffs, utils)
from gradunwarp.core.unwarp_resample import Unwarper
log = globals.get_logger()
def argument_parse_gradunwarp():
'''Arguments parser from the command line
'''
# initiate
p = arg.ArgumentParser(version=globals.VERSION, usage=globals.usage)
# required arguments
p.add_argument('infile',
action='store',
help='The input warped file (nifti or mgh)')
p.add_argument(
'outfile',
action='store',
#!/usr/bin/env python
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#
# See COPYING file distributed along with the gradunwarp package for the
# copyright and license terms.
#
### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##
import argparse as arg
import os
import logging
from gradunwarp.core import (globals, coeffs, utils)
from gradunwarp.core.unwarp_resample import Unwarper
log = globals.get_logger()
def argument_parse_gradunwarp():
'''Arguments parser from the command line
'''
# initiate
p = arg.ArgumentParser(version=globals.VERSION, usage=globals.usage)
# required arguments
p.add_argument('infile', action='store',
help='The input warped file (nifti or mgh)')
p.add_argument('outfile', action='store',
help='The output unwarped file (extension should be .nii/.nii.gz/.mgh/.mgz)')
p.add_argument('vendor', action='store', choices=['siemens', 'ge'],
help='vendor (either "ge" or "siemens" for now)')
coef_grp = p.add_mutually_exclusive_group(required=True)