def submit_project(self, request, claims):
"""
Submit a Haddock project to the Haddock server
"""
project = load_project(request['project_id'])
result = {'project_id': None}
if not project.empty():
# Get username and password
username, password = resolve_credentials(request)
webformat = write_web(project)
root = project.get_root()
xmlrpc = HaddockXmlrpcInterface(server_url=self.component_config.settings['haddock_server_url'],
username=username, password=password)
response = xmlrpc.launch_project(webformat, root.runname.value)
result['project_id'] = response
if response != root.runname.value:
self.log.error('Unable to submit project {0} to Haddock server'.format(request['project_id']))
else:
self.log.error('Unable to load project {0}'.format(request['project_id']))
return result
def tearDownClass(cls):
"""
When we are done, test export of the project
"""
runname = cls.project.query_nodes(key='runname')
output_web_file = os.path.join(cls.files, '{0}.web'.format(runname.value))
with open(output_web_file, 'w') as wf:
wf.write(write_web(cls.project))
def test_format_export(self):
"""
Test export of format
"""
graph = read_web(self.web_file)
# Export graph as .web to file
web = write_web(graph)
outfile = os.path.join(FILEPATH, 'test_export.web')
with open(outfile, 'w') as otf:
otf.write(web)
self.tempfiles.append(outfile)
self.assertTrue(os.path.isfile(outfile))
# Import again and compare source graph
graph1 = read_web(outfile)
self.assertEqual(len(graph), len(graph1))
self.assertEqual(len(graph.edges), len(graph1.edges))
'pdb': {
'mode': 'submit',
'chain': 'B',
'code': None,
'pdbdata': open('1ckaB.pdb').read()
},
'r': {
'activereslist': [1, 2, 3, 4, 5, 6, 7, 8, 9]
}
}
block_id, params = new_parameter_block(project,
'haddock-partner-request.v1',
'HaddockPartnerParameters',
max_mult=5)
edit_parameter_block(project, block_id, partner2)
# Add fully-flexible segments to first partner
block_id, params = new_parameter_block(
project,
'haddock-flexrange-request.v1',
'Range',
attach='{0}.fullyflex.segments'.format(block_id))
edit_parameter_block(project, block_id, {'start': 1, 'end': 9})
# Set username
edit_parameter_block(project, 'project', {'username': '******'})
# Run final validation
project.getnodes(project.root).validate()
print(write_web(project))