def _parseFile(self, iterator):
block = None
for idx, line in enumerate(iterator):
try:
# Found start of block:
line = line.strip()
if line.startswith(';'):
continue
elif line.startswith('['):
if block:
yield self._finishBlock(block)
block = self._createBlock(line)
elif line != '':
tmp = lmap(
str.strip,
utils.QM('[' in line, line.split(' = ', 1),
rsplit(line, '=', 1)))
if len(tmp) != 2:
raise DatasetError(
'Malformed entry in dataset file:\n%s' % line)
key, value = tmp
handlerInfo = self._handleEntry.get(key.lower(), None)
if handlerInfo:
(prop, parser, msg) = handlerInfo
block[prop] = try_apply(value, parser, msg)
else:
block[DataProvider.FileList].append(
self._parseEntry(block, key, value))
except Exception:
raise DatasetError('Unable to parse %s:%d\n\t%s' %
(repr(self._filename), idx, repr(line)))
if block:
yield self._finishBlock(block)
def _create_blocks(self, iterable):
block = None
for idx, line in enumerate(iterable):
try:
# Found start of block:
line = line.strip()
if line.startswith(';'):
continue
elif line.startswith('['):
if block:
yield self._finish_block(block)
block = self._create_block(line)
elif line != '':
if '[' in line: # metadata on this line -> enforce whitespace '/path/file = ...'
tmp = lmap(str.strip, line.split(' = ', 1))
else: # loose whitespace convention (allow: '/path/file_var=B_test=1')
tmp = lmap(str.strip, rsplit(line, '=', 1))
if len(tmp) != 2:
raise DatasetError(
'Malformed entry in dataset file:\n%s' % line)
self._fill_block(block, *tmp)
except Exception:
raise DatasetError('Unable to parse %s:%d\n\t%s' %
(repr(self._filename), idx, repr(line)))
if block:
yield self._finish_block(block)
def getBlocks(self, show_stats):
statsProcessor = NullDataProcessor(config=None, onChange=None)
if show_stats:
statsProcessor = self._stats
if self._cache_block is None:
ec = ExceptionCollector()
def getAllBlocks():
for provider in self._providerList:
try:
for block in provider.getBlocksNormed():
yield block
except Exception:
ec.collect()
if utils.abort():
raise DatasetError('Could not retrieve all datasets!')
try:
self._cache_block = list(
statsProcessor.process(
self._datasetProcessor.process(getAllBlocks())))
except Exception:
raise DatasetError(
'Unable to run datasets through processing pipeline!')
ec.raise_any(DatasetError('Could not retrieve all datasets!'))
return self._cache_block
def generateDatasetName(self, key, data):
if self._discovery:
return GCProvider.generateDatasetName(self, key, data)
if 'CMSSW_DATATIER' not in data:
raise DatasetError('Incompatible data tiers in dataset: %s' % data)
getPathComponents = lambda path: utils.QM(path, tuple(path.strip('/').split('/')), ())
userPath = getPathComponents(self.nameDS)
(primary, processed, tier) = (None, None, None)
# In case of a child dataset, use the parent infos to construct new path
for parent in data.get('PARENT_PATH', []):
if len(userPath) == 3:
(primary, processed, tier) = userPath
else:
try:
(primary, processed, tier) = getPathComponents(parent)
except Exception:
pass
if (primary is None) and (len(userPath) > 0):
primary = userPath[0]
userPath = userPath[1:]
if len(userPath) == 2:
(processed, tier) = userPath
elif len(userPath) == 1:
(processed, tier) = (userPath[0], data['CMSSW_DATATIER'])
elif len(userPath) == 0:
(processed, tier) = ('Dataset_%s' % key, data['CMSSW_DATATIER'])
rawDS = '/%s/%s/%s' % (primary, processed, tier)
if None in (primary, processed, tier):
raise DatasetError('Invalid dataset name supplied: %r\nresulting in %s' % (self.nameDS, rawDS))
return utils.replaceDict(rawDS, data)
def getDatasets(self):
if self._cache_dataset is None:
self._cache_dataset = []
ec = ExceptionCollector()
for provider in self._providerList:
try:
self._cache_dataset.extend(provider.getDatasets())
except Exception:
ec.collect()
if utils.abort():
raise DatasetError('Could not retrieve all datasets!')
ec.raise_any(DatasetError('Could not retrieve all datasets!'))
return self._cache_dataset
def _readBlockFromConfig(self, ds_config, datasetExpr, datasetNick,
datasetID):
metadata_keys = parseJSON(
ds_config.get('metadata', '[]', onChange=None))
common_metadata = parseJSON(
ds_config.get('metadata common', '[]', onChange=None))
if len(common_metadata) > len(metadata_keys):
raise DatasetError(
'Unable to set %d common metadata items with %d metadata keys'
% (len(common_metadata), len(metadata_keys)))
common_prefix = ds_config.get('prefix', '', onChange=None)
file_list = []
has_events = False
has_se_list = False
for url in ds_config.getOptions():
if url == 'se list':
has_se_list = True
elif url == 'events':
has_events = True
elif url not in [
'dataset hash', 'id', 'metadata', 'metadata common',
'nickname', 'prefix'
]:
file_list.append(
self._readFileFromConfig(ds_config, url, metadata_keys,
common_metadata, common_prefix))
if not file_list:
raise DatasetError(
'There are no dataset files specified for dataset %r' %
datasetExpr)
result = {
DataProvider.Nickname:
ds_config.get('nickname', datasetNick, onChange=None),
DataProvider.DatasetID:
ds_config.getInt('id', datasetID, onChange=None),
DataProvider.Dataset:
datasetExpr,
DataProvider.FileList:
sorted(file_list, key=lambda fi: fi[DataProvider.URL]),
}
if metadata_keys:
result[DataProvider.Metadata] = metadata_keys
if has_events:
result[DataProvider.NEntries] = ds_config.getInt('events',
-1,
onChange=None)
if has_se_list:
result[DataProvider.Locations] = parseList(
ds_config.get('se list', '', onChange=None), ',')
return result
def processBlock(self, block):
blockDS = block[DataProvider.Dataset]
oldNick = block.get(DataProvider.Nickname, '')
newNick = self.getName(oldNick, blockDS, block)
# Check if nickname is used consistenly in all blocks of a datasets
if self._checkConsistency:
if self._checkConsistencyData.setdefault(blockDS, newNick) != newNick:
raise DatasetError('Different blocks of dataset "%s" have different nicknames: "%s" != "%s"' % (
blockDS, self._checkConsistencyData[blockDS], newNick))
if self._checkCollision:
if self._checkCollisionData.setdefault(newNick, blockDS) != blockDS:
raise DatasetError('Multiple datasets use the same nickname "%s": "%s" != "%s"' % (
newNick, self._checkCollisionData[newNick], blockDS))
block[DataProvider.Nickname] = newNick
return block
def check_splitter(self, splitter):
def _get_proposal(splitter):
return reduce(lambda prop, prov: prov.check_splitter(prop), self._provider_list, splitter)
prop_splitter = _get_proposal(splitter)
if prop_splitter != _get_proposal(prop_splitter):
raise DatasetError('Dataset providers could not agree on valid dataset splitter!')
return prop_splitter
def _splitJobs(self, fileList, eventsPerJob, firstEvent):
nextEvent = firstEvent
succEvent = nextEvent + eventsPerJob
curEvent = 0
lastEvent = 0
curSkip = 0
fileListIter = iter(fileList)
job = {
DataSplitter.Skipped: 0,
DataSplitter.NEntries: 0,
DataSplitter.FileList: []
}
while True:
if curEvent >= lastEvent:
try:
fileObj = next(fileListIter)
except StopIteration:
if job[DataSplitter.FileList]:
yield job
break
nEvents = fileObj[DataProvider.NEntries]
if nEvents < 0:
raise DatasetError(
'EventBoundarySplitter does not support files with a negative number of events!'
)
curEvent = lastEvent
lastEvent = curEvent + nEvents
curSkip = 0
if nextEvent >= lastEvent:
curEvent = lastEvent
continue
curSkip += nextEvent - curEvent
curEvent = nextEvent
available = lastEvent - curEvent
if succEvent - nextEvent < available:
available = succEvent - nextEvent
if not len(job[DataSplitter.FileList]):
job[DataSplitter.Skipped] = curSkip
job[DataSplitter.NEntries] += available
nextEvent += available
job[DataSplitter.FileList].append(fileObj[DataProvider.URL])
if DataProvider.Metadata in fileObj:
job.setdefault(DataSplitter.Metadata,
[]).append(fileObj[DataProvider.Metadata])
if nextEvent >= succEvent:
succEvent += eventsPerJob
yield job
job = {
DataSplitter.Skipped: 0,
DataSplitter.NEntries: 0,
DataSplitter.FileList: []
}
def process_block(self, block):
# Check uniqueness of URLs
url_hash_list = []
if self._check_url != DatasetUniqueMode.ignore:
block[DataProvider.FileList] = list(
self._process_fi_list(url_hash_list,
block[DataProvider.FileList]))
url_hash_list.sort()
# Check uniqueness of blocks
if self._check_block != DatasetUniqueMode.ignore:
block_hash = md5_hex(
repr((block.get(DataProvider.Dataset),
block[DataProvider.BlockName], url_hash_list,
block[DataProvider.NEntries],
block[DataProvider.Locations],
block.get(DataProvider.Metadata))))
if block_hash in self._recorded_block:
msg = 'Multiple occurences of block: "%s"!' % DataProvider.get_block_id(
block)
msg += ' (This check can be configured with %r)' % 'dataset check unique block'
if self._check_block == DatasetUniqueMode.warn:
self._log.warning(msg)
elif self._check_block == DatasetUniqueMode.abort:
raise DatasetError(msg)
elif self._check_block == DatasetUniqueMode.skip:
return None
self._recorded_block.add(block_hash)
return block
def _read_block(self, ds_config, dataset_expr, dataset_nick):
metadata_name_list = parse_json(
ds_config.get('metadata', '[]', on_change=None))
common_metadata = parse_json(
ds_config.get('metadata common', '[]', on_change=None))
if len(common_metadata) > len(metadata_name_list):
raise DatasetError('Unable to set %d common metadata items ' %
len(common_metadata) + 'with %d metadata keys' %
len(metadata_name_list))
common_prefix = ds_config.get('prefix', '', on_change=None)
fn_list = []
has_events = False
has_se_list = False
for url in ds_config.get_option_list():
if url == 'se list':
has_se_list = True
elif url == 'events':
has_events = True
elif url not in [
'dataset hash', 'metadata', 'metadata common', 'nickname',
'prefix'
]:
fi = self._read_fi(ds_config, url, metadata_name_list,
common_metadata, common_prefix)
fn_list.append(fi)
if not fn_list:
raise DatasetError(
'There are no dataset files specified for dataset %r' %
dataset_expr)
result = {
DataProvider.Nickname:
ds_config.get('nickname', dataset_nick or '', on_change=None),
DataProvider.FileList:
sorted(fn_list, key=lambda fi: fi[DataProvider.URL])
}
result.update(DataProvider.parse_block_id(dataset_expr))
if metadata_name_list:
result[DataProvider.Metadata] = metadata_name_list
if has_events:
result[DataProvider.NEntries] = ds_config.get_int('events',
-1,
on_change=None)
if has_se_list:
result[DataProvider.Locations] = parse_list(
ds_config.get('se list', '', on_change=None), ',')
return result
def _partition_block(self, fi_list, events_per_job, entry_first):
event_next = entry_first
event_succ = event_next + events_per_job
event_current = 0
event_prev = 0
skip_current = 0
fi_iter = iter(fi_list)
proto_partition = {
DataSplitter.Skipped: 0,
DataSplitter.NEntries: 0,
DataSplitter.FileList: []
}
while True:
if event_current >= event_prev:
fi = next(fi_iter, None)
if fi is None:
if proto_partition[DataSplitter.FileList]:
yield proto_partition
break
event_count = fi[DataProvider.NEntries]
if event_count < 0:
raise DatasetError(
'%s does not support files with a negative number of events!'
% self.__class__.__name__)
event_current = event_prev
event_prev = event_current + event_count
skip_current = 0
if event_next >= event_prev:
event_current = event_prev
continue
skip_current += event_next - event_current
event_current = event_next
available = event_prev - event_current
if event_succ - event_next < available:
available = event_succ - event_next
if not proto_partition[DataSplitter.FileList]:
proto_partition[DataSplitter.Skipped] = skip_current
proto_partition[DataSplitter.NEntries] += available
event_next += available
proto_partition[DataSplitter.FileList].append(fi[DataProvider.URL])
if DataProvider.Metadata in fi:
proto_partition.setdefault(DataSplitter.Metadata, []).append(
fi[DataProvider.Metadata])
if event_next >= event_succ:
event_succ += events_per_job
yield proto_partition
proto_partition = {
DataSplitter.Skipped: 0,
DataSplitter.NEntries: 0,
DataSplitter.FileList: []
}
def _get_dataset_name(self, metadata_dict, hash_dataset):
if self._discovery:
return GCProvider._get_dataset_name(self, metadata_dict,
hash_dataset)
if 'CMSSW_DATATIER' not in metadata_dict:
raise DatasetError('Incompatible data tiers in dataset: %s' %
repr(metadata_dict))
def _get_path_components(path):
if path:
return path.strip('/').split('/')
return []
user_dataset_part_list = tuple(
_get_path_components(self._dataset_pattern))
(primary, processed, tier) = (None, None, None)
# In case of a child dataset, use the parent infos to construct new path
for parent in metadata_dict.get('PARENT_PATH', []):
if len(user_dataset_part_list) == 3:
(primary, processed, tier) = user_dataset_part_list
else:
try:
(primary, processed,
tier) = tuple(_get_path_components(parent))
except Exception:
clear_current_exception()
if (primary is None) and (len(user_dataset_part_list) > 0):
primary = user_dataset_part_list[0]
user_dataset_part_list = user_dataset_part_list[1:]
if len(user_dataset_part_list) == 2:
(processed, tier) = user_dataset_part_list
elif len(user_dataset_part_list) == 1:
(processed, tier) = (user_dataset_part_list[0],
metadata_dict['CMSSW_DATATIER'])
elif len(user_dataset_part_list) == 0:
(processed, tier) = ('Dataset_%s' % hash_dataset,
metadata_dict['CMSSW_DATATIER'])
raw_dataset_name = '/%s/%s/%s' % (primary, processed, tier)
if None in (primary, processed, tier):
raise DatasetError(
'Invalid dataset name supplied: %r\nresulting in %s' %
(self._dataset_pattern, raw_dataset_name))
return replace_with_dict(raw_dataset_name, metadata_dict)
def getAllBlocks():
for provider in self._providerList:
try:
for block in provider.getBlocks(silent):
yield block
except Exception:
ec.collect()
if utils.abort():
raise DatasetError('Could not retrieve all datasets!')
def checkSplitter(self, splitter):
def getProposal(x):
return reduce(lambda prop, prov: prov.checkSplitter(prop),
self._providerList, x)
if getProposal(splitter) != getProposal(getProposal(splitter)):
raise DatasetError(
'Dataset providers could not agree on valid dataset splitter!')
return getProposal(splitter)
def get_dataset_name_list(self):
if self._cache_dataset is None:
self._cache_dataset = set()
exc = ExceptionCollector()
for provider in self._provider_list:
try:
self._cache_dataset.update(provider.get_dataset_name_list())
except Exception:
exc.collect()
exc.raise_any(DatasetError('Could not retrieve all datasets!'))
return list(self._cache_dataset)
def _readBlockFromConfig(self, config, datasetExpr, datasetNick,
datasetID):
common_metadata = parseJSON(
config.get('metadata common', '[]', onChange=None))
common_prefix = config.get('prefix', '', onChange=None)
file_list = []
has_events = False
has_se_list = False
for url in config.getOptions():
if url == 'se list':
has_se_list = True
elif url == 'events':
has_events = True
elif url not in [
'dataset hash', 'id', 'metadata', 'metadata common',
'nickname', 'prefix'
]:
info = config.get(url, onChange=None)
tmp = info.split(' ', 1)
fi = {
DataProvider.URL: common_prefix + url,
DataProvider.NEntries: int(tmp[0])
}
if common_metadata:
fi[DataProvider.Metadata] = common_metadata
if len(tmp) == 2:
fi[DataProvider.Metadata] = fi.get(DataProvider.Metadata,
[]) + parseJSON(tmp[1])
file_list.append(fi)
if not file_list:
raise DatasetError(
'There are no dataset files specified for dataset %r' %
datasetExpr)
result = {
DataProvider.Nickname:
config.get('nickname', datasetNick, onChange=None),
DataProvider.DatasetID:
config.getInt('id', datasetID, onChange=None),
DataProvider.Dataset:
datasetExpr,
DataProvider.Metadata:
parseJSON(config.get('metadata', '[]', onChange=None)),
DataProvider.FileList:
sorted(file_list, key=lambda fi: fi[DataProvider.URL]),
}
if has_events:
result[DataProvider.NEntries] = config.getInt('events',
-1,
onChange=None)
if has_se_list:
result[DataProvider.Locations] = parseList(
config.get('se list', '', onChange=None), ',')
return result
def processFI(fiList): for fi in fiList: urlHash = md5_hex(repr((fi[DataProvider.URL], fi[DataProvider.NEntries], fi.get(DataProvider.Metadata)))) if urlHash in self._recordedURL: msg = 'Multiple occurences of URL: %r!' % fi[DataProvider.URL] msg += ' (This check can be configured with %r)' % 'dataset check unique url' if self._checkURL == DatasetUniqueMode.warn: self._log.warning(msg) elif self._checkURL == DatasetUniqueMode.abort: raise DatasetError(msg) elif self._checkURL == DatasetUniqueMode.skip: continue self._recordedURL.add(urlHash) recordedBlockURL.append(urlHash) yield fi
def processBlock(self, block):
# Check uniqueness of URLs
recordedBlockURL = []
if self._checkURL != DatasetUniqueMode.ignore:
def processFI(fiList):
for fi in fiList:
urlHash = md5_hex(
repr((fi[DataProvider.URL], fi[DataProvider.NEntries],
fi.get(DataProvider.Metadata))))
if urlHash in self._recordedURL:
msg = 'Multiple occurences of URL: %r!' % fi[
DataProvider.URL]
msg += ' (This check can be configured with %r)' % 'dataset check unique url'
if self._checkURL == DatasetUniqueMode.warn:
self._log.warning(msg)
elif self._checkURL == DatasetUniqueMode.abort:
raise DatasetError(msg)
elif self._checkURL == DatasetUniqueMode.skip:
continue
self._recordedURL.add(urlHash)
recordedBlockURL.append(urlHash)
yield fi
block[DataProvider.FileList] = list(
processFI(block[DataProvider.FileList]))
recordedBlockURL.sort()
# Check uniqueness of blocks
if self._checkBlock != DatasetUniqueMode.ignore:
blockHash = md5_hex(
repr((block.get(DataProvider.Dataset),
block[DataProvider.BlockName], recordedBlockURL,
block[DataProvider.NEntries],
block[DataProvider.Locations],
block.get(DataProvider.Metadata))))
if blockHash in self._recordedBlock:
msg = 'Multiple occurences of block: "%s"!' % DataProvider.bName(
block)
msg += ' (This check can be configured with %r)' % 'dataset check unique block'
if self._checkBlock == DatasetUniqueMode.warn:
self._log.warning(msg)
elif self._checkBlock == DatasetUniqueMode.abort:
raise DatasetError(msg)
elif self._checkBlock == DatasetUniqueMode.skip:
return None
self._recordedBlock.add(blockHash)
return block
def _iter_blocks_raw(self):
def _filter_block(block):
if self._filter:
return self._filter in '/%s#' % DataProvider.get_block_id(
block)
return True
try:
fp = SafeFile(self._filename)
except Exception:
raise DatasetError('Unable to open dataset file %s' %
repr(self._filename))
for block in self._create_blocks(fp.iter_close()):
if _filter_block(block):
self._raise_on_abort()
yield block
def _getBlocksInternal(self):
def _filterBlock(block):
if self._filter:
name = '/%s#%s#' % (block[DataProvider.Dataset], block.get(DataProvider.BlockName, ''))
return self._filter in name
return True
try:
fp = open(self._filename, 'r')
except Exception:
raise DatasetError('Unable to open dataset file %s' % repr(self._filename))
try:
for block in self._parseFile(fp):
if _filterBlock(block):
yield block
fp.close()
except Exception:
fp.close()
raise
def _readFileFromConfig(self, ds_config, url, metadata_keys,
common_metadata, common_prefix):
info = ds_config.get(url, onChange=None)
tmp = info.split(' ', 1)
fi = {
DataProvider.URL: common_prefix + url,
DataProvider.NEntries: int(tmp[0])
}
if common_metadata:
fi[DataProvider.Metadata] = common_metadata
if len(tmp) == 2:
file_metadata = parseJSON(tmp[1])
if len(common_metadata) + len(file_metadata) > len(metadata_keys):
raise DatasetError(
'Unable to set %d file metadata items with %d metadata keys (%d common metadata items)'
% (len(file_metadata), len(metadata_keys),
len(common_metadata)))
fi[DataProvider.Metadata] = fi.get(DataProvider.Metadata,
[]) + file_metadata
return fi
def getBlocks(self, silent=True):
if self._cache_block is None:
ec = ExceptionCollector()
def getAllBlocks():
for provider in self._providerList:
try:
for block in provider.getBlocks(silent):
yield block
except Exception:
ec.collect()
if utils.abort():
raise DatasetError('Could not retrieve all datasets!')
self._cache_block = list(
self._stats.process(
self._datasetProcessor.process(getAllBlocks())))
ec.raise_any(DatasetError('Could not retrieve all datasets!'))
logging.getLogger('user').info(
'Summary: Running over %s distributed over %d blocks.',
*self._stats.getStats())
return self._cache_block
def _read_fi(self, ds_config, url, metadata_name_list, common_metadata,
common_prefix):
info = ds_config.get(url, on_change=None)
tmp = info.split(' ', 1)
fi = {
DataProvider.URL: common_prefix + url,
DataProvider.NEntries: int(tmp[0])
}
if common_metadata:
fi[DataProvider.Metadata] = common_metadata
if len(tmp) == 2:
file_metadata = parse_json(tmp[1])
if len(common_metadata) + len(file_metadata) > len(
metadata_name_list):
raise DatasetError(
'Unable to set %d file metadata items ' %
len(file_metadata) +
'with %d metadata keys ' % len(metadata_name_list) +
'(%d common metadata items)' % len(common_metadata))
fi[DataProvider.Metadata] = fi.get(DataProvider.Metadata,
[]) + file_metadata
return fi
def _handleError(self, msg, mode):
if mode == DatasetCheckMode.warn:
self._log.warning(msg)
elif mode == DatasetCheckMode.abort:
raise DatasetError(msg)
def get_block_list_cached(self, show_stats):
exc = ExceptionCollector()
result = self._create_block_cache(show_stats, lambda: self._iter_all_blocks(exc))
exc.raise_any(DatasetError('Could not retrieve all datasets!'))
return result
def _try_apply(value, fun, desc):
try:
return fun(value)
except Exception:
raise DatasetError('Unable to parse %s: %s' % (desc, repr(value)))
