def getTrackView(self, region): allowOverlaps = self._trackFormatReq.allowOverlaps() borderHandling = self._trackFormatReq.borderHandling() assert (allowOverlaps is not None) assert (borderHandling is not None) origTrackView = self._getRawTrackView(region, borderHandling, allowOverlaps) if self.formatConverters is None: self.formatConverters = getFormatConverters( origTrackView.trackFormat, self._trackFormatReq) if self.formatConverters == []: raise IncompatibleTracksError(prettyPrintTrackName(self.trackName) + ' with format: '\ + str(origTrackView.trackFormat) + ('(' + origTrackView.trackFormat._val + ')' if origTrackView.trackFormat._val else '') + \ ' does not satisfy ' + str(self._trackFormatReq)) if not self.formatConverters[0].canHandle(origTrackView.trackFormat, self._trackFormatReq): raise IncompatibleTracksError(getClassName(self.formatConverters[0]) +\ ' does not support conversion from ' + str(origTrackView.trackFormat) + \ ' to ' + str(self._trackFormatReq)) return self.formatConverters[0].convert(origTrackView)
def getUniqueKey(self, genome): assert self.formatConverters is not None and len(self.formatConverters) == 1, 'FC: '+str(self.formatConverters) assert( not None in [self._trackFormatReq.allowOverlaps(), \ self._trackFormatReq.borderHandling()] ) if not self._trackId: self._trackId = TrackInfo(genome, self.trackName).id return hash((tuple(self.trackName), self._trackId, getClassName(self.formatConverters[0]), \ self.formatConverters[0].VERSION, self._trackFormatReq.allowOverlaps(), \ self._trackFormatReq.borderHandling()))
def getUniqueKey(self, genome): assert self.formatConverters is not None and len( self.formatConverters) == 1, 'FC: ' + str(self.formatConverters) assert( not None in [self._trackFormatReq.allowOverlaps(), \ self._trackFormatReq.borderHandling()] ) if not self._trackId: self._trackId = TrackInfo(genome, self.trackName).id return hash((tuple(self.trackName), self._trackId, getClassName(self.formatConverters[0]), \ self.formatConverters[0].VERSION, self._trackFormatReq.allowOverlaps(), \ self._trackFormatReq.borderHandling()))
def getTrackView(self, region): allowOverlaps = self._trackFormatReq.allowOverlaps() borderHandling = self._trackFormatReq.borderHandling() assert(allowOverlaps is not None) assert(borderHandling is not None) origTrackView = self._getRawTrackView(region, borderHandling, allowOverlaps) if self.formatConverters is None: self.formatConverters = getFormatConverters(origTrackView.trackFormat, self._trackFormatReq) if self.formatConverters == []: raise IncompatibleTracksError(prettyPrintTrackName(self.trackName) + ' with format: '\ + str(origTrackView.trackFormat) + ('(' + origTrackView.trackFormat._val + ')' if origTrackView.trackFormat._val else '') + \ ' does not satisfy ' + str(self._trackFormatReq)) if not self.formatConverters[0].canHandle(origTrackView.trackFormat, self._trackFormatReq): raise IncompatibleTracksError(getClassName(self.formatConverters[0]) +\ ' does not support conversion from ' + str(origTrackView.trackFormat) + \ ' to ' + str(self._trackFormatReq)) return self.formatConverters[0].convert(origTrackView)