def setUp(self):
BaseAttrs.setUp(self)
sid = h5s.create(h5s.NULL)
tid = h5t.C_S1.copy()
tid.set_size(10)
aid = h5a.create(self.f.id, b'x', tid, sid)
self.empty_obj = h5py.Empty(np.dtype("S10"))
def setUp(self):
BaseAttrs.setUp(self)
sid = h5s.create(h5s.NULL)
tid = h5t.C_S1.copy()
tid.set_size(10)
aid = h5a.create(self.f.id, b'x', tid, sid)
self.empty_obj = h5py.Empty(np.dtype("S10"))
def create(self, name, data, shape=None, dtype=None):
""" Create a new attribute, overwriting any existing attribute.
name
Name of the new attribute (required)
data
An array to initialize the attribute (required)
shape
Shape of the attribute. Overrides data.shape if both are
given, in which case the total number of points must be unchanged.
dtype
Data type of the attribute. Overrides data.dtype if both
are given.
"""
with phil:
if data is not None:
data = numpy.asarray(data, order="C", dtype=dtype)
if shape is None:
shape = data.shape
elif numpy.product(shape) != numpy.product(data.shape):
raise ValueError("Shape of new attribute conflicts with shape of data")
if dtype is None:
dtype = data.dtype
if isinstance(dtype, h5py.Datatype):
htype = dtype.id
dtype = htype.dtype
else:
if dtype is None:
dtype = numpy.dtype("f")
htype = h5t.py_create(dtype, logical=True)
if shape is None:
raise ValueError('At least one of "shape" or "data" must be given')
data = data.reshape(shape)
space = h5s.create_simple(shape)
if name in self:
h5a.delete(self._id, self._e(name))
attr = h5a.create(self._id, self._e(name), htype, space)
if data is not None:
try:
attr.write(data)
except:
attr._close()
h5a.delete(self._id, self._e(name))
raise
def create(self, name, data, shape=None, dtype=None):
""" Create a new attribute, overwriting any existing attribute.
name
Name of the new attribute (required)
data
An array to initialize the attribute (required)
shape
Shape of the attribute. Overrides data.shape if both are
given, in which case the total number of points must be unchanged.
dtype
Data type of the attribute. Overrides data.dtype if both
are given.
"""
if data is not None:
data = numpy.asarray(data, order='C', dtype=dtype)
if shape is None:
shape = data.shape
elif numpy.product(shape) != numpy.product(data.shape):
raise ValueError(
"Shape of new attribute conflicts with shape of data")
if dtype is None:
dtype = data.dtype
if isinstance(dtype, h5py.Datatype):
htype = dtype.id
dtype = htype.dtype
else:
if dtype is None:
dtype = numpy.dtype('f')
htype = h5t.py_create(dtype, logical=True)
if shape is None:
raise ValueError('At least one of "shape" or "data" must be given')
data = data.reshape(shape)
space = h5s.create_simple(shape)
if name in self:
h5a.delete(self._id, self._e(name))
attr = h5a.create(self._id, self._e(name), htype, space)
if data is not None:
try:
attr.write(data)
except:
attr._close()
h5a.delete(self._id, self._e(name))
raise
def create(self, name, data, shape=None, dtype=None):
""" Create a new attribute, overwriting any existing attribute.
name
Name of the new attribute (required)
data
An array to initialize the attribute (required)
shape
Shape of the attribute. Overrides data.shape if both are
given, in which case the total number of points must be unchanged.
dtype
Data type of the attribute. Overrides data.dtype if both
are given.
"""
# TODO: REMOVE WHEN UNICODE VLENS IMPLEMENTED
# Hack to support Unicode values (scalars only)
#if isinstance(data, unicode):
# unicode_hack = True
# data = data.encode('utf8')
#else:
# unicode_hack = False
if data is not None:
data = numpy.asarray(data, order='C', dtype=dtype)
if shape is None:
shape = data.shape
elif numpy.product(shape) != numpy.product(data.shape):
raise ValueError("Shape of new attribute conflicts with shape of data")
if dtype is None:
dtype = data.dtype
if dtype is None:
dtype = numpy.dtype('f')
if shape is None:
raise ValueError('At least one of "shape" or "data" must be given')
data = data.reshape(shape)
space = h5s.create_simple(shape)
htype = h5t.py_create(dtype, logical=True)
# TODO: REMOVE WHEN UNICODE VLENS IMPLEMENTED
#if unicode_hack:
# htype.set_cset(h5t.CSET_UTF8)
if name in self:
h5a.delete(self._id, self._e(name))
attr = h5a.create(self._id, self._e(name), htype, space)
if data is not None:
attr.write(data)
def setUp(self):
BaseAttrs.setUp(self)
sid = h5s.create(h5s.NULL)
tid = h5t.C_S1.copy()
tid.set_size(10)
aid = h5a.create(self.f.id, b'x', tid, sid)
def setUp(self):
BaseAttrs.setUp(self)
sid = h5s.create(h5s.NULL)
tid = h5t.C_S1.copy()
tid.set_size(10)
aid = h5a.create(self.f.id, b'x', tid, sid)
def create_attribute(_id, _name, _dims, _value):
"""
Writes a HDF5 string attribute, ASCII, NULLTERM
_id should be something like dset.id
_dims should be a list. For a scalar, use an empty list []
"""
# Make sure we don't have a unicode name
_name=str_to_h5(_name)
# This routine for string attributes
_dtype = h5t.FORTRAN_S1
# Create a scalar space (if dims len=0); otherwise a simple space
if len(_dims) == 0:
_sid=h5s.create(h5s.SCALAR)
elif len(_dims) == 1 and _dims[0] == 0 :
_sid=h5s.create(h5s.SCALAR)
else:
_sid=h5s.create_simple(tuple(_dims))
# endif
# Create the memory & file datatypes. Adjust if datatype is string.
_mdtype = _dtype.copy()
_fdtype = _dtype.copy()
_classtype = _dtype.get_class()
if _classtype == h5t.STRING:
if isinstance(_value, list):
_strlen=0
for _part in _value: _strlen=max(_strlen, len(_part))
else:
_strlen = len(_value)
# endif
if _strlen < 1: return None
_mdtype.set_size(_strlen)
_mdtype.set_strpad(h5t.STR_SPACEPAD)
_fdtype.set_size(_strlen+1)
_fdtype.set_strpad(h5t.STR_NULLTERM)
# endif
## Either add or replace the attribute
# if h5a.exists(_id, _name):
# _aid = h5a.open(_id, name=_name)
# else:
# _aid=h5a.create(_id, _name, _fdtype, _sid)
# endif
# Either add or replace the attribute
if h5a.exists(_id, _name):
_aid = h5a.delete(_id, name=_name)
# endif
_aid=h5a.create(_id, _name, _fdtype, _sid)
if _classtype == h5t.STRING:
if isinstance(_value, list):
_value = np.array(_value, dtype=np.string_)
else:
_value = np.array(str_to_h5(_value))
# endif
else:
_pytype = _fdtype.dtype
_value = np.array(_value, dtype=_pytype)
# endif
_aid.write(_value)
return _aid