def setUp(self):
"""Setup test."""
self.pos = PosPackage()
sample_filepath = pkg_resources.resource_filename(
'harvestingkit.tests',
os.path.join('data', 'sample_pos_record.xml')
)
self.pos.document = parse(sample_filepath)
class POSPackageTests(unittest.TestCase):
"""Tests for the PosPackage."""
def setUp(self):
"""Setup test."""
self.pos = PosPackage()
sample_filepath = pkg_resources.resource_filename(
'harvestingkit.tests',
os.path.join('data', 'sample_pos_record.xml')
)
self.pos.document = parse(sample_filepath)
def test_authors(self):
"""Test the field authors."""
self.assertEqual(self.pos._get_authors(),
[('El-Khadra, Aida', ['INFN and Università di Firenze'])])
def test_language(self):
"""Test the field language."""
self.assertEqual(self.pos._get_language(), 'en')
def test_publisher(self):
"""Test the field publisher."""
self.assertEqual(self.pos._get_publisher(), 'SISSA')
def test_date(self):
"""Test the field date."""
self.assertEqual(self.pos._get_date(), '2014-03-19')
def test_title(self):
"""Test the field title."""
self.assertEqual(self.pos._get_title(), 'Heavy Flavour Physics Review')
def test_copyright(self):
"""Test the field copyright."""
self.assertEqual(self.pos._get_copyright(), 'CC-BY-NC-SA')
def test_subject(self):
"""Test the field subject."""
self.assertEqual(self.pos._get_subject(), 'Lattice Field Theory')
def test_identifier(self):
"""Test the field identifier."""
self.assertEqual(self.pos.get_identifier(), 'oai:pos.sissa.it:LATTICE 2013/001')
def test_record(self):
"""Test the field identifier."""
record = self.pos.get_record(self.pos.document)
self.assertTrue(record["100"])
self.assertTrue(record["980"])
class POSPackageTests(unittest.TestCase):
def setUp(self):
self.pos = PosPackage()
self.pos.document = parse(join(dirname(folder), pos_test_record))
def test_authors(self):
self.assertEqual(self.pos._get_authors(), ['El-Khadra, Aida', 'Johnson, A.T.'])
def test_language(self):
self.assertEqual(self.pos._get_language(), 'en')
def test_publisher(self):
self.assertEqual(self.pos._get_publisher(), 'SISSA')
def test_date(self):
self.assertEqual(self.pos._get_date(), '2014-03-19')
def test_copyright(self):
self.assertEqual(self.pos._get_copyright(), 'CC-BY-NC-SA')
def test_subject(self):
self.assertEqual(self.pos._get_subject(), 'Lattice Field Theory')
def test_identifier(self):
self.assertEqual(self.pos.get_identifier(), 'oai:pos.sissa.it:LATTICE 2013/001')
def main(args):
if len(args) != 1:
print("usage: python bibfilter_oaipos2inspire.py input_filename")
raise Exception("Wrong usage!!")
input_filename = args[0]
out_folder = create_work_folder(CFG_POS_OUT_DIRECTORY)
insert_records = []
append_records = []
error_records = []
files_uploaded = []
pos = PosPackage()
xml_doc = parse(input_filename)
for record in xml_doc.getElementsByTagName('record'):
rec = pos.get_record(record)
identifier = pos.get_identifier()
conference = identifier.split(':')[2]
conference = conference.split('/')[0]
contribution = identifier.split(':')[2]
contribution = contribution.split('/')[1]
identifier = "PoS(%s)%s" % (conference, contribution)
query = "773__p:pos 773__v:%s 773__c:%s" % \
(conference.replace(' ', ''), contribution)
print("Querying with: %s" % (query, ))
results = perform_request_search(p=query, of="id")
#harvest fulltext
url = base_url + identifier
session = requests.session()
r = session.get(url)
parsed_html = BeautifulSoup(r.text)
links = parsed_html.body.findAll('a')
found = False
for link in links:
url = urllib.quote(link['href'], safe=":/")
if url.endswith('.pdf'):
found = True
if results:
rec = create_record()
filename = join(out_folder, identifier + ".pdf")
record_add_field(rec,
'856',
ind1='4',
subfields=[('u', url), ('y', 'PoS server')])
record_add_field(rec,
'FFT',
subfields=[('a', filename), ('t', 'PoS'),
('d', 'Fulltext')])
try:
print('Downloading ' + url)
download_url(url, "pdf", filename, 5, 60.0)
if results:
recid = results[0]
record_add_field(rec, '001', controlfield_value=recid)
append_records.append(rec)
else:
insert_records.append(rec)
except InvenioFileDownloadError:
print("Download of %s failed" % (url, ))
break
if not found:
error_records.append(rec)
#upload to FTP
tempfile_path = '/tmp/%s.xml' % (contribution, )
with open(tempfile_path, 'w') as tempfile:
tempfile.write(record_xml_output(rec))
try:
submit_records_via_ftp(tempfile_path, conference)
files_uploaded.append('%s/%s.xml' % (conference, contribution))
write_message("%s successfully uploaded to FTP server" %
tempfile_path)
except:
write_message("Failed to upload %s to FTP server" % tempfile_path)
remove(tempfile_path)
insert_filename = "%s.insert.xml" % (input_filename, )
append_filename = "%s.append.xml" % (input_filename, )
errors_filename = "%s.errors.xml" % (input_filename, )
created_files = []
if write_record_to_file(insert_filename, insert_records):
copy(insert_filename, out_folder)
created_files.append(join(out_folder, basename(insert_filename)))
if write_record_to_file(append_filename, append_records):
copy(append_filename, out_folder)
created_files.append(join(out_folder, basename(append_filename)))
if write_record_to_file(errors_filename, error_records):
copy(errors_filename, errors_filename)
created_files.append(join(out_folder, basename(errors_filename)))
total_records = len(append_records) + len(insert_records) + len(
error_records)
subject = "PoS Harvest results: " + datetime.now().strftime(
"%Y-%m-%d %H:%M:%S")
body = """
Total of %d records processed:
%d new records,
%d records already existing in the system,
%d records that failed to retrieve the fulltext
Location of new records:
%s
""" % \
(total_records,
len(insert_records),
len(append_records),
len(error_records),
"\n".join(created_files))
if files_uploaded:
body += "\nFiles uploaded:"
for fl in files_uploaded:
body += "\n\t%s file uploaded on the FTP Server\n" % (fl, )
write_message(subject)
write_message(body)
if not send_email(CFG_SITE_SUPPORT_EMAIL, CFG_POSHARVEST_EMAIL, subject,
body):
print("ERROR: Mail not sent")
else:
print("Mail sent to %s" % (CFG_POSHARVEST_EMAIL, ))
def main(args):
if len(args) != 1:
print("usage: python bibfilter_oaipos2inspire.py input_filename")
raise Exception("Wrong usage!!")
input_filename = args[0]
out_folder = create_work_folder(CFG_POS_OUT_DIRECTORY)
insert_records = []
append_records = []
error_records = []
files_uploaded = []
pos = PosPackage()
xml_doc = parse(input_filename)
for record in xml_doc.getElementsByTagName('record'):
rec = pos.get_record(record)
identifier = pos.get_identifier()
conference = identifier.split(':')[2]
conference = conference.split('/')[0]
contribution = identifier.split(':')[2]
contribution = contribution.split('/')[1]
identifier = "PoS(%s)%s" % (conference, contribution)
query = "773__p:pos 773__v:%s 773__c:%s" % \
(conference.replace(' ', ''), contribution)
print("Querying with: %s" % (query,))
results = perform_request_search(p=query, of="id")
#harvest fulltext
url = base_url + identifier
session = requests.session()
r = session.get(url)
parsed_html = BeautifulSoup(r.text)
links = parsed_html.body.findAll('a')
found = False
for link in links:
url = urllib.quote(link['href'], safe=":/")
if url.endswith('.pdf'):
found = True
if results:
rec = create_record()
filename = join(out_folder, identifier + ".pdf")
record_add_field(rec, '856', ind1='4', subfields=[
('u', url),
('y', 'PoS server')
])
record_add_field(rec, 'FFT', subfields=[('a', filename),
('t', 'PoS'),
('d', 'Fulltext')])
try:
print('Downloading ' + url)
download_url(url, "pdf", filename, 5, 60.0)
if results:
recid = results[0]
record_add_field(rec, '001', controlfield_value=recid)
append_records.append(rec)
else:
insert_records.append(rec)
except InvenioFileDownloadError:
print("Download of %s failed" % (url,))
break
if not found:
error_records.append(rec)
#upload to FTP
tempfile_path = '/tmp/%s.xml' % (contribution,)
with open(tempfile_path, 'w') as tempfile:
tempfile.write(record_xml_output(rec))
try:
submit_records_via_ftp(tempfile_path, conference)
files_uploaded.append('%s/%s.xml' % (conference, contribution))
write_message("%s successfully uploaded to FTP server" % tempfile_path)
except:
write_message("Failed to upload %s to FTP server" % tempfile_path)
remove(tempfile_path)
insert_filename = "%s.insert.xml" % (input_filename,)
append_filename = "%s.append.xml" % (input_filename,)
errors_filename = "%s.errors.xml" % (input_filename,)
created_files = []
if write_record_to_file(insert_filename, insert_records):
copy(insert_filename, out_folder)
created_files.append(join(out_folder, basename(insert_filename)))
if write_record_to_file(append_filename, append_records):
copy(append_filename, out_folder)
created_files.append(join(out_folder, basename(append_filename)))
if write_record_to_file(errors_filename, error_records):
copy(errors_filename, errors_filename)
created_files.append(join(out_folder, basename(errors_filename)))
total_records = len(append_records) + len(insert_records) + len(error_records)
subject = "PoS Harvest results: " + datetime.now().strftime("%Y-%m-%d %H:%M:%S")
body = """
Total of %d records processed:
%d new records,
%d records already existing in the system,
%d records that failed to retrieve the fulltext
Location of new records:
%s
""" % \
(total_records,
len(insert_records),
len(append_records),
len(error_records),
"\n".join(created_files))
if files_uploaded:
body += "\nFiles uploaded:"
for fl in files_uploaded:
body += "\n\t%s file uploaded on the FTP Server\n" % (fl,)
write_message(subject)
write_message(body)
if not send_email(CFG_SITE_SUPPORT_EMAIL,
CFG_POSHARVEST_EMAIL,
subject,
body):
print("ERROR: Mail not sent")
else:
print("Mail sent to %s" % (CFG_POSHARVEST_EMAIL,))
def main(args):
if len(args) != 1:
print("usage: python bibfilter_oaipos2inspire.py input_filename")
raise Exception("Wrong usage!!")
input_filename = args[0]
out_folder = create_work_folder(CFG_POS_OUT_DIRECTORY)
insert_records = []
append_records = []
error_records = []
pos = PosPackage()
xml_doc = parse(input_filename)
for record in xml_doc.getElementsByTagName("record"):
rec = pos.get_record(record)
identifier = pos.get_identifier()
conference = identifier.split(":")[2]
conference = conference.split("/")[0]
contribution = identifier.split(":")[2]
contribution = contribution.split("/")[1]
identifier = "PoS(%s)%s" % (conference, contribution)
query = "773__p:pos 773__v:%s 773__c:%s" % (conference.replace(" ", ""), contribution)
print("Querying with: %s" % (query,))
results = perform_request_search(p=query, of="id")
# harvest fulltext
url = base_url + identifier
session = requests.session()
r = session.get(url)
parsed_html = BeautifulSoup(r.text)
links = parsed_html.body.findAll("a")
found = False
for link in links:
url = urllib.quote(link["href"], safe=":/")
if url.endswith(".pdf"):
found = True
if results:
rec = {}
filename = join(out_folder, identifier + ".pdf")
record_add_field(rec, "856", ind1="4", subfields=[("u", url), ("y", "Fulltext")])
record_add_field(rec, "FFT", subfields=[("a", filename), ("t", "PoS"), ("d", "Fulltext")])
try:
print("Downloading " + url)
download_url(url, "pdf", filename, 5, 60.0)
if results:
recid = results[0]
record_add_field(rec, "001", controlfield_value=recid)
append_records.append(rec)
else:
insert_records.append(rec)
except InvenioFileDownloadError:
print("Download of %s failed" % (url,))
break
if not found:
error_records.append(rec)
insert_filename = "%s.insert.xml" % (input_filename,)
append_filename = "%s.append.xml" % (input_filename,)
errors_filename = "%s.errors.xml" % (input_filename,)
created_files = []
if write_record_to_file(insert_filename, insert_records):
copy(insert_filename, out_folder)
created_files.append(join(out_folder, basename(insert_filename)))
if write_record_to_file(append_filename, append_records):
copy(append_filename, out_folder)
created_files.append(join(out_folder, basename(append_filename)))
if write_record_to_file(errors_filename, error_records):
copy(errors_filename, errors_filename)
created_files.append(join(out_folder, basename(errors_filename)))
total_records = len(append_records) + len(insert_records) + len(error_records)
subject = "PoS Harvest results: " + datetime.now().strftime("%Y-%m-%d %H:%M:%S")
body = """
Total of %d records processed:
%d new records,
%d records already existing in the system,
%d records that failed to retrieve the fulltext
Location of new records:
%s
""" % (
total_records,
len(insert_records),
len(append_records),
len(error_records),
"\n".join(created_files),
)
print(subject)
print(body)
if not send_email(CFG_SITE_SUPPORT_EMAIL, CFG_POSHARVEST_EMAIL, subject, body):
print("ERROR: Mail not sent")
else:
print("Mail sent to %s" % (CFG_POSHARVEST_EMAIL,))
def setUp(self):
self.pos = PosPackage()
self.pos.document = parse(join(dirname(folder), pos_test_record))