def main():
parser = argparse.ArgumentParser('Extract data from an HDF5 file')
parser.add_argument('file', help='the HDF5 files are in')
parser.add_argument('galaxy_name', help='the galaxy name')
parser.add_argument('galaxy_id', type=int, help='the galaxy id')
parser.add_argument('directory', help='the directory to write the answers in')
parser.add_argument('-f0', '--best_fit', action='store_true', help='extract best fit')
parser.add_argument('-f1', '--percentile_50', action='store_true', help='extract percentile 50')
parser.add_argument('-f2', '--highest_prob_bin', action='store_true', help='extract highest probability bin')
parser.add_argument('-f3', '--percentile_2_5', action='store_true', help='extract percentile 2.5')
parser.add_argument('-f4', '--percentile_16', action='store_true', help='extract percentile 16')
parser.add_argument('-f5', '--percentile_84', action='store_true', help='extract percentile 84')
parser.add_argument('-f6', '--percentile_97_5', action='store_true', help='extract percentile 97.5')
parser.add_argument('-l0', '--f_mu_sfh', action='store_true', help='extract f_mu (SFH)')
parser.add_argument('-l1', '--f_mu_ir', action='store_true', help='extract f_mu (IR)')
parser.add_argument('-l2', '--mu_parameter', action='store_true', help='extract mu parameter')
parser.add_argument('-l3', '--tau_v', action='store_true', help='extract tau_V')
parser.add_argument('-l4', '--ssfr_0_1gyr', action='store_true', help='extract sSFR_0.1Gyr')
parser.add_argument('-l5', '--m_stars', action='store_true', help='extract M(stars)')
parser.add_argument('-l6', '--l_dust', action='store_true', help='extract Ldust')
parser.add_argument('-l7', '--t_c_ism', action='store_true', help='extract T_C^ISM')
parser.add_argument('-l8', '--t_w_bc', action='store_true', help='extract T_W^BC')
parser.add_argument('-l9', '--xi_c_tot', action='store_true', help='extract xi_C^tot')
parser.add_argument('-l10', '--xi_pah_tot', action='store_true', help='extract xi_PAH^tot')
parser.add_argument('-l11', '--xi_mir_tot', action='store_true', help='extract xi_MIR^tot')
parser.add_argument('-l12', '--xi_w_tot', action='store_true', help='extract xi_W^tot')
parser.add_argument('-l13', '--tau_v_ism', action='store_true', help='extract tau_V^ISM')
parser.add_argument('-l14', '--m_dust', action='store_true', help='extract M(dust)')
parser.add_argument('-l15', '--sfr_0_1gyr', action='store_true', help='extract SFR_0.1Gyr')
parser.add_argument('-t0', '--normal', action='store_true', help='get normal pixels')
parser.add_argument('-t1', '--int_flux', action='store_true', help='get integrated flux pixels)')
parser.add_argument('-t2', '--rad', action='store_true', help='get radial pixels')
args = parser.parse_args()
features, layers, pixel_types = get_features_and_layers_pixeltypes_cmd_line(vars(args))
if len(features) == 0 or len(layers) == 0:
parser.print_help()
if os.path.exists(args.directory) and os.path.isdir(args.directory):
process_galaxies(args, features, layers, pixel_types)
else:
LOG.error('The directory {0} does not exist'.format(args.directory))
def main():
parser = argparse.ArgumentParser('Extract data from an HDF5 file')
parser.add_argument('file', help='the HDF5 files are in')
parser.add_argument('galaxy_name', help='the galaxy name')
parser.add_argument('galaxy_id', type=int, help='the galaxy id')
parser.add_argument('directory',
help='the directory to write the answers in')
parser.add_argument('-f0',
'--best_fit',
action='store_true',
help='extract best fit')
parser.add_argument('-f1',
'--percentile_50',
action='store_true',
help='extract percentile 50')
parser.add_argument('-f2',
'--highest_prob_bin',
action='store_true',
help='extract highest probability bin')
parser.add_argument('-f3',
'--percentile_2_5',
action='store_true',
help='extract percentile 2.5')
parser.add_argument('-f4',
'--percentile_16',
action='store_true',
help='extract percentile 16')
parser.add_argument('-f5',
'--percentile_84',
action='store_true',
help='extract percentile 84')
parser.add_argument('-f6',
'--percentile_97_5',
action='store_true',
help='extract percentile 97.5')
parser.add_argument('-l0',
'--f_mu_sfh',
action='store_true',
help='extract f_mu (SFH)')
parser.add_argument('-l1',
'--f_mu_ir',
action='store_true',
help='extract f_mu (IR)')
parser.add_argument('-l2',
'--mu_parameter',
action='store_true',
help='extract mu parameter')
parser.add_argument('-l3',
'--tau_v',
action='store_true',
help='extract tau_V')
parser.add_argument('-l4',
'--ssfr_0_1gyr',
action='store_true',
help='extract sSFR_0.1Gyr')
parser.add_argument('-l5',
'--m_stars',
action='store_true',
help='extract M(stars)')
parser.add_argument('-l6',
'--l_dust',
action='store_true',
help='extract Ldust')
parser.add_argument('-l7',
'--t_c_ism',
action='store_true',
help='extract T_C^ISM')
parser.add_argument('-l8',
'--t_w_bc',
action='store_true',
help='extract T_W^BC')
parser.add_argument('-l9',
'--xi_c_tot',
action='store_true',
help='extract xi_C^tot')
parser.add_argument('-l10',
'--xi_pah_tot',
action='store_true',
help='extract xi_PAH^tot')
parser.add_argument('-l11',
'--xi_mir_tot',
action='store_true',
help='extract xi_MIR^tot')
parser.add_argument('-l12',
'--xi_w_tot',
action='store_true',
help='extract xi_W^tot')
parser.add_argument('-l13',
'--tau_v_ism',
action='store_true',
help='extract tau_V^ISM')
parser.add_argument('-l14',
'--m_dust',
action='store_true',
help='extract M(dust)')
parser.add_argument('-l15',
'--sfr_0_1gyr',
action='store_true',
help='extract SFR_0.1Gyr')
parser.add_argument('-t0',
'--normal',
action='store_true',
help='get normal pixels')
parser.add_argument('-t1',
'--int_flux',
action='store_true',
help='get integrated flux pixels)')
parser.add_argument('-t2',
'--rad',
action='store_true',
help='get radial pixels')
args = parser.parse_args()
features, layers, pixel_types = get_features_and_layers_pixeltypes_cmd_line(
vars(args))
if len(features) == 0 or len(layers) == 0:
parser.print_help()
if os.path.exists(args.directory) and os.path.isdir(args.directory):
process_galaxies(args, features, layers, pixel_types)
else:
LOG.error('The directory {0} does not exist'.format(args.directory))
parser.add_argument('-t1',
'--int_flux',
action='store_true',
help='get integrated flux pixels)')
parser.add_argument('-t2',
'--rad',
action='store_true',
help='get radial pixels')
args = vars(parser.parse_args())
# Get a DB connection
engine = create_engine(DB_LOGIN)
connection = engine.connect()
features, layers, pixel_types = get_features_and_layers_pixeltypes_cmd_line(
args)
if len(features) == 0 or len(layers) == 0:
parser.print_help()
exit(1)
# Create a new request
# Need to make:
# HDF5_request
# HDF5_request_feature
# HDF5_request_galaxy
# HDF5_request_layer
# HDF5_request_pixel
transaction = connection.begin()
result = connection.execute(HDF5_REQUEST.insert(),
profile_id=47016,
email=args['email'],
parser.add_argument('-l12', '--xi_w_tot', action='store_true', help='extract xi_W^tot')
parser.add_argument('-l13', '--tau_v_ism', action='store_true', help='extract tau_V^ISM')
parser.add_argument('-l14', '--m_dust', action='store_true', help='extract M(dust)')
parser.add_argument('-l15', '--sfr_0_1gyr', action='store_true', help='extract SFR_0.1Gyr')
parser.add_argument('-t0', '--normal', action='store_true', help='get normal pixels')
parser.add_argument('-t1', '--int_flux', action='store_true', help='get integrated flux pixels)')
parser.add_argument('-t2', '--rad', action='store_true', help='get radial pixels')
args = vars(parser.parse_args())
# Get a DB connection
engine = create_engine(DB_LOGIN)
connection = engine.connect()
features, layers, pixel_types = get_features_and_layers_pixeltypes_cmd_line(args)
if len(features) == 0 or len(layers) == 0:
parser.print_help()
exit(1)
# Create a new request
# Need to make:
# HDF5_request
# HDF5_request_feature
# HDF5_request_galaxy
# HDF5_request_layer
# HDF5_request_pixel
transaction = connection.begin()
result = connection.execute(HDF5_REQUEST.insert(), profile_id=47016, email=args['email'], created_at=time.time())
connection.execute(HDF5_REQUEST_GALAXY.insert(), hdf5_request_id=result.inserted_primary_key, galaxy_id=args['galaxy_id'])
